Array 1 545754-548447 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045642.1 Lactobacillus helveticus strain LZ-R-5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== =============================================================== ================== 545754 30 100.0 37 .............................. CAATGTCAGAATTTTCATACAAAAATCCTAAAAACTT 545821 30 100.0 35 .............................. GATCAATAGAAAGGGCAGTGATTGGAATATGCCGA 545886 30 100.0 37 .............................. CTCGGCTTTTATACAGATCAATTCAATTCATTCACTG 545953 30 100.0 34 .............................. ACTGAAACTAAGTGAACGTTATGTATAGGGCACA 546017 30 100.0 36 .............................. AGTCAACAATGGTATTAGTGGAATTGACAAGGTATT 546083 30 100.0 35 .............................. AAGAACCAATGGAACGACTTTGGCAACTATAAGTA 546148 30 100.0 35 .............................. AGCAAAGGTGCTGCTATCAATTGGTCAATTCCTGA 546213 30 100.0 36 .............................. TTTGCTCATCAATATATGCGATTAATATCCTAACGT 546279 30 100.0 35 .............................. TGTAAGCAAACAGCGTGATCATGTGATTTATCACG 546344 30 100.0 37 .............................. AAGTTTGAGTTTGAGAAACGCATTGCTTTTATGTTTC 546411 30 100.0 36 .............................. TGCTAAGCCTTCGATCATCTCATAATCAATATCTGC 546477 30 100.0 35 .............................. GATATTGCCCGAAATGTTAAGGGCGCAAAGCTCAG 546542 30 100.0 37 .............................. TCGAACAACAGCAGAATAACCACATAACTCCATACAA 546609 30 100.0 37 .............................. ATATAACGCTTATATACGCTAATTTACAATTTTAAGC 546676 30 100.0 36 .............................. CACAACTCACTCACTCAATAACTTAACTCACTTAAA 546742 30 100.0 37 .............................. TAATATAAGTTGTGATTTTTAAGCCATTTCTCGCTTA 546809 30 100.0 36 .............................. AAGATGAAAAGCTAGTTGAAAAGTATCTTGAATTGA 546875 30 100.0 36 .............................. TGCTATATGTGCAAGGTAAAGGGCACACGGAAAAAG 546941 30 100.0 35 .............................. TTTCAAAAAAAGTAGAAAACTACAAAGAGCTTGCT 547006 30 100.0 35 .............................. TGCTTAGCAGTATAAGTATGTTTATTTAGATCATC 547071 30 100.0 36 .............................. TGCTATATGTGCAAGGTAAAGGGCACACGGAAAAAG 547137 30 100.0 37 .............................. TTAACCTATCTGCTAGCGAACACAACAAGGCAAACTC 547204 30 100.0 36 .............................. GCTATCTGACGTGTAGCCCAATCAACTGAACTAGAT 547270 30 100.0 36 .............................. TATCTAAGCACCTACTTTCATGCCGTGTGTAGCAAG 547336 30 100.0 35 .............................. GATGAACTAAAGCAGACTTATGCTGATTTAGCTGC 547401 30 100.0 36 .............................. CTCTTAGTACCTATCCGGCGCTGTGAACGGTTTTGA 547467 30 100.0 36 .............................. ATTAGTAGCTGACTACAATTCCTTACAATCTAATCA 547533 30 100.0 63 .............................. TTAAGTCATATAATCTTAAAAACGGTAATAAGTCATATAATCTTAAAAACGGTAAAAAGAAGT 547626 30 100.0 35 .............................. TTAAATTCAACAATGCAGGAAATGGTGATCAATCA 547691 30 100.0 35 .............................. TGCTTAGCAGTATAAGTATGTTTATTTAGATCATC 547756 30 100.0 37 .............................. TTGCTTTGAGTGGTAAAACTTATTTTGCTTTGCTTTA 547823 30 100.0 37 .............................. AGTGATTTAAGCTTGACTCAAGGTGATGATAAGGACG 547890 30 100.0 35 .............................. TCTATCTATATCCTTTCTTTTGGTCGTTGGACTTT 547955 30 100.0 36 .............................. ACTGCATGGGGGATTAAGTCAGCATTAATGGAGCTT 548021 30 100.0 36 .............................. CACGATGACAATGTCGACTCAATGGTTTATGCCGTT 548087 30 100.0 36 .............................. ACAAATTTTTACATACATTCATGAGAAAACCACACC 548153 30 100.0 35 .............................. TAATTCAGGTGGTAACGGAATGCTTGAACCCATTG 548218 30 100.0 36 .............................. AAACTTGAATGATCTATAGTACCTCTTTTTGAGTGA 548284 30 90.0 38 ............T.............G..T TTTTGAAAGTTTAATCTAAAAGTTTTAGTAGTTGGTAG 548352 30 83.3 36 ..C.........TC....G..........T AAAGCCGAATTTTACACCAACTTTACTAAATATGCT 548418 30 73.3 0 .A......C.......G...G..AA...TT | ========== ====== ====== ====== ============================== =============================================================== ================== 41 30 98.7 37 GTTTTTATTTAACTTAAGAGAAATGTAAAG # Left flank : CCTATGAGCCTTATGTTATGGGATGGTAATAGATATGTATGTGATTCTGGTTTACGATATCGTAATGGATAAACAAGGTGCTAAAGTAAGTAGACATGTTTTCAAAATATGTAAAAAGTATTTAACTCATGTTCAAAATTCAGTATTCGAAGGTGAACTAACCAAGTCCCAGCTTGAAAGCTTGAAGAATGAGTTGGATAGATGGATTCGACAGAACGTTGATTCAGTGATTATATTCAAAAATAGAAATAAAGATTGGCTTGATAAAGAATTTATGGGTCAGGATTTAACTGATTTAACGTCGGATATATTCTAAAGAAGAATCTGTCGATGTAAGATACGAAGAAAATCCTGGGAGATCGACAGATTTGCAAAATGCCGGTACAATGATATTTGTGCGATTTGTCTAATGATTTTAGTGATTTTTGGATGCGTTTTTGGTTAGGTCGACAGATAGGGCCGTTGAATCTATTGATACAGTAGGACTGGTAGTTGCAACT # Right flank : TGTGTGATTAAAGTCAATTAAATATAAAACATAAAGATTTATATTTAATTTACGGGAAGGAAACTACAATCAAACATCCTACTAAAATCCTACCAATTAAACTGGTAAAATAGATAAGTAAGTATAGAGAACAATTTTTATAAAAGGGGAATAAAATGGCAGACAAAAAATTACTTCTAATCGATGGTAACTCTGTAGCTTTCAGAGCTTTTTACGCTCTTTATCGTCAACTAGAATCTTTCAAGAGTCCGGATGACCTGCACACTAATGCCATTTACGCTTTTAAGAACATGCTCGATGTCCTTTTAAAAGACGTTGATCCAACCCACGTATTGGTAGCTTTTGATGCAGGAAAAGTCACTTTTAGAACAAAAATGTATGGTGAATACAAAGGTGGACGTGCGAAAACTCCAGAAGAGTTGCTCGAACAAATGCCTTACATTCAAGAAATGCTGCATGACTTGGGTATTAAAACTTATGAATTGAAGAATTATGAAGCA # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.03, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTATTTAACTTAAGAGAAATGTAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:80.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [55.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.27 Confidence: LOW] # Array family : NA // Array 2 666231-666380 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045642.1 Lactobacillus helveticus strain LZ-R-5 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 666231 29 100.0 32 ............................. TACTTAAAATTATGCACTACTGGAGGCATTTA 666292 29 100.0 32 ............................. TGTCTATTTTTTCTTTTTGCGCCTCCGTGGCT 666353 28 79.3 0 .....................-CA.C.AA | ========== ====== ====== ====== ============================= ================================ ================== 3 29 93.1 33 GTATTCTCCACGTATGTGGAGGTGATCCT # Left flank : CCCTATCTGGGTTTACAAAATATATCCTCGTTATCCGATGTATAAAACAAAATATGTAAAAGCATATAAATTAAAGCCTGGAGACACACCCATAGTAAGACATCGTGGTGTTGACTGGGGTTGGACCGTTGGAAAGTCTTATCGTTATTGTATTTTAAAAGACAGCTTTTCTTGGTTTGATGGCTATTCAAAATATAAATGGGTTGACCAAGGCTTACTTGATGGCTCTATGAAAGATGAGCATTTTGCCTACAAATTCACTTGGAAACAGTATTGTCAATTAATTAAAGCCGGTATCTACACAACAGTACATCCAAAGAAATTATGGAACTCCAAAATTAAGAAGATGATTGAAAGATGGAAGCCTGAGACTGATAACAGCTAATAAAAAAGCCCGCCTACTCAAACTAGCAGACGGGTTGTATTTAACACATCAAAAGAACACAGGTTCACTAAAAAGGAGGTGAACACAATGCCAAAAAGAAAAAATACCGCTATTA # Right flank : AAAACAGGACTAACTCAACCAGATTAGTCCTGTTTTTCATCTATATTAAAATATTTCTTCGCTGCATCGCTCATGCGATCAGGCGTCCAGACTGGATACCAAACAAATTCAACATCAACATTTTTTACTTCTAGCACTTTTTTAACTGCCTGAGTAATACTATCAATTAGGTAGCCAGTTAACGGACAAGTAGGGGTAGTCAAAGTCATATTGATTAAACAGATTCCATCTTTGTCCAGATCGATTTCATAAATTAAACCTAGATTGACTACATCAACATTCAATTCAGGATCGATAACTGTCGCCAATTGATTGATAATATCGTTTTTAATTGTTTCACCGTCACGCATTTTGTCACGCATCCTTGCCAAAAATTTTAGCTTTGATTGCTTGGCCGGTTGGAGTACCAGCTAAGCCACCGATTCGGTCTCACGCAGGGATGCTGGCATTTGATGACCAACTTTTTTTCATAGCATCGATACATTCGTCGGCTGGGATCA # Questionable array : NO Score: 5.01 # Score Detail : 1:0, 2:3, 3:0, 4:0.65, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCTCCACGTATGTGGAGGTGATCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.33%AT] # Reference repeat match prediction: F [matched GTATTCCCCACGTATGTGGGGGTGATCCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.40,-8.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //