Array 1 142446-137675 **** Predicted by CRISPRDetect 2.4 *** >NZ_CABPUH010000006.1 Campylobacter concisus isolate 2009-75710, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 142445 30 100.0 36 .............................. TTTGAAAGCTCTCTTAGTCGCTGCCCAAACCCCTCA 142379 30 100.0 37 .............................. CTCTCTAGGATCATTTGATTTTTTAAATGCTGAAAGA 142312 30 100.0 36 .............................. TCTACAATCATACCAAAGTTACCCAAGTGCCTATCG 142246 30 100.0 35 .............................. AAGCCCCTTACTGCGTCTTTGCTATTTAGTATATC 142181 30 100.0 38 .............................. TAGCTCCATCCGTCAAGGTACGATCGCAGAGCGCCGAA 142113 30 100.0 36 .............................. ATACAGCGCCTTGCCCCTCAGCCCAAAAAATCCCAA 142047 30 100.0 35 .............................. TAAGTTAAAGGGCAAGTGTTAGGAATAGCGCTTTG 141982 30 100.0 36 .............................. CTACGTGAAGCAGAAACAGCCATTTTTTTAATCAAA 141916 30 100.0 37 .............................. ATAATAACCATTTTAGAAAGAGTAAAAGCACGAAGAG 141849 30 100.0 36 .............................. TATATAGCCAAGAGCGCACGCTCATTCCCCACTTCG 141783 30 100.0 33 .............................. GTATAAGTATCGGCAATGTCTTTTTGCCATATA 141720 30 100.0 38 .............................. GAATTTTTGAAATAAAAAGTTGGTATATCTTTGTATCT 141652 30 100.0 35 .............................. TCTTACTAAGGGCGAATATGTGCTTACTTGGGCAT 141587 30 100.0 34 .............................. TATACGTTCAACTCTTCTTTGCTCATCATATTTG 141523 30 100.0 38 .............................. CGTTGATTGCCCTGGGCTGAAAATCACTTTCAGTTTTG 141455 30 100.0 37 .............................. ATAGCTTGCCGTTATATTTGCCTATTATAATGCCATC 141388 30 100.0 37 .............................. TGAGAGTGAAAAATATTCTTTCTCGCTCAAGATGAGA 141321 30 100.0 37 .............................. GAACTTCTTTAAAATTTACATCAGCCGAAACACCACC 141254 30 100.0 38 .............................. TTCTGGTGAAAAAGATATTTTCTTGTTTTTTGTTGAGC 141186 30 100.0 35 .............................. TTTCCCAAAGAAAAAGCAGCAATATAACAACTATT 141121 30 100.0 37 .............................. AAAAGAATATAGGTCAATTTGACCCTCGCATTATTAA 141054 30 100.0 35 .............................. CTAAAAATAAAGTGACCTTGCAAGATGAAAACAAA 140989 30 96.7 34 ..........G................... CCAACTAACCCTAACCCTGAAAAGGTAGCTCAAG 140925 30 100.0 36 .............................. ACTTTTGCTGATAAAATAGTAACTCCAGTAAGCGAC 140859 30 100.0 34 .............................. ATAGATTAATTGTGGCATTTTTAATCATTTGTGG 140795 30 100.0 34 .............................. TTCCCACAACTGCATTTTAATCGTGATAAGTCTG 140731 30 100.0 38 .............................. TATCACTAAATTTAAGACTTAATACTTCATTTTTACGC 140663 30 100.0 33 .............................. AAACGTGACGGCGTGAGCGTGCCATTACCTCCG 140600 30 100.0 36 .............................. AATTTAACGTTTTGCATAATTAAAACTCATTGCAAA 140534 30 100.0 37 .............................. ACTCCACAATAGTTTTATGCTTTAGCAAAAACTCTAG 140467 30 100.0 35 .............................. AGGTTTGATACAGATGAAACTTTTGCTATTTTATC 140402 30 96.7 34 ....A......................... GTATTATAACCTTCCTCGAATGACGGATATATGT 140338 30 96.7 37 ....A......................... TCGGCTCGCTCGTTGCGTTCAGCTTTTCGCGCTCTGC 140271 30 96.7 37 ....A......................... TGTCTGGGATATTTTGCCTTACAGGGGCATCTGCCTA 140204 30 96.7 38 ....A......................... AATCAAATTGCCAAACTGCACCAACCTCGTTATACTTA 140136 30 96.7 36 ....A......................... ATGTTTGGGAACTCTACTATTTCGCCGTCTTTTGCA 140070 30 96.7 35 ....A......................... AAATTTTAATTTCCCTTAACTTTTCTACTAATTCT 140005 30 96.7 36 ....A......................... ATGCGATTAAAACGAAGCAAAAACAAAGCCTACCAA 139939 30 96.7 36 ....A......................... CTATTTATAATGCCTCTATTTGTGCTTGGTACACCA 139873 30 96.7 36 ....A......................... TTTCATCTTGTGCGTTTTCATCTTTTTGGCTATCAA 139807 30 96.7 33 ....A......................... ACAATGATACGTTTGCCAAGCTAGAGCCGTATA 139744 30 96.7 35 ....A......................... AACGATATAAACACTTTAGGGCTGAAAGCAAAGGC 139679 30 96.7 34 ....A......................... GGTTGTATAGCTCGCCGTTGTTGGCTATAATGTA 139615 30 96.7 37 ....A......................... CCAAGATATTGCCAATAGATGCTAATAAAAGTACTTT 139548 30 96.7 35 ....A......................... ATGAATAGTATTCTTCTACAAGAAAACCACCAATC 139483 30 96.7 35 ....A......................... GTGAAACTGATAAAATCTTTTTAAAAACTAAGCTT 139418 30 100.0 37 .............................. ATGCAGGATCGCACTCTTTAGGTTTGTTTGGGCTTTT 139351 30 100.0 36 .............................. ATGTTACTCTTAGCCCACAATGTCTCAAATCTTGAA 139285 30 100.0 36 .............................. ATAAAAACGCACAAAAAGCAAAATTAAAAGGAGAGA 139219 30 100.0 38 .............................. CAAGAGTGTTAAGAAATGCGATGAATAGAACTCTTACG 139151 30 100.0 38 .............................. CAAGAGTGTTAAGAAATGCGATGAATAGAACTCTTACG 139083 30 100.0 37 .............................. TTCAGTAAATGATGACAAGATCAATCAAATACAAAGT 139016 30 100.0 34 .............................. ATGCAACGTTTGCAGCATCATCTATGATACTAAG 138952 30 100.0 35 .............................. CCAGTCAAAAAGCCAAGCATACGATTTAATTTAGC 138887 30 100.0 37 .............................. TCTCGTTTGATGCGCTATACTTTGCAGTTATCATCCG 138820 30 100.0 36 .............................. TTTCGTAGCCGTTTAATAGTAAAACGATCGTATCGT 138754 30 100.0 36 .............................. TCCCAGTCGTAATGCAAAGCGATGACGACCCAAGAT 138688 30 100.0 37 .............................. TATGTATCTGCAAGGCGTGCCACTGCAAAGAGTGAGC 138621 30 96.7 35 ....A......................... TAGCGATGATAAGAATTAATAATTTTCTCATTTGT 138556 30 96.7 36 ....A......................... TAAAGCAAGGCTAACCTCCTTTTCGTCCTTGTGCTT 138490 30 96.7 35 ....A......................... CTAAAAAGTACTATATGCACTCTACTAGAATGACT 138425 30 96.7 36 ....A......................... AATTGTGTTTGTTTCATAATAATGGCATCGTAGTTT 138359 30 100.0 36 .............................. TGGCAAGGATTGCAGATAGATTTTCTGCCAAATTGG 138293 30 100.0 35 .............................. TTCATCTTTTTTAGTTTTTCATACTGACGGTGTTG 138228 30 96.7 34 ...........................C.. CAAACTACAAGGGTATGAAAAAAATCAAGAAAAA 138164 30 100.0 37 .............................. GAGACAGAAGAAGCTAACGCTTCTACGTGCGTGCGTG 138097 30 100.0 36 .............................. GATCTCTAAAATCAAAGTCGTTTGCACTAGTGGCCA 138031 30 100.0 35 .............................. CCGGTAAAAATCAAGCAGGTCATAAGGCTGCATTT 137966 30 100.0 34 .............................. CAATTAGAGCAAGAGCTGGGGTTTGCACCCTGCC 137902 30 96.7 34 ......T....................... ATGCAACATTTGCAGCACCATCTATGATACTAAG 137838 30 100.0 37 .............................. TAAAGCACGTCGGCGATAAAGAGAAAATCGCACTTTT 137771 30 96.7 37 ...............A.............. CCTGAAAGCGTGCAGACTGGCACATTTATGTTTTTAG 137704 30 90.0 0 ..............T..........T...T | ========== ====== ====== ====== ============================== ====================================== ================== 73 30 98.8 36 ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Left flank : GAGCTAGATCCTCGCATCGGCTTTTTGCACGAGCCAAACTACCGCGCGCTAAGCCTTCACCTAGACCTTGCGGAGATTTTTAAGCCGATCTTGGGCGACACGCTGATTTTTAATATGCTAAATAAAAAAGAGATCACCGCAAAAGACTTCCAAACGGACGCTGGCAGGATAAAATTTAGCAACGACGCCGTGCAAAAGATCGAGCTAAAGATGATCTCACGCCTTTGCGAGACGCTCACGGTGGGTGACAGGGAGCTAACGTGGAGGCAGGTGATCCGCCGCGAAGCAAATAAGCTTAAAAAGTGCATCTGCGAGGACGCGCCTTATGAAGGCTTTAGGTGGGAGTGAAATCGCATTTTAATAAAGCGTTTTTTAAGATTTTAAAAAGCTTGAAATTTGGGGCTTGGCGTATTTATATGTAGCTAAAATTTAGTCAAATTTAAGGCGAAACAATATAGACTTCTTGCATCAAAAGGCCTATAAATCAGCTTTTTGGCGCT # Right flank : CTTAAAAAAAGATATCCTTAAGCAAAAAGCTTAAAATTAAACTTTAAATTTAGTTTGACATATTAAATTATTAACATGAGTATTGATATTTTAAAATATTTCTAAAGAAGTTGGACCCAAATATGGGTCCGAATAAGGTAGTTATAGACCTTCAAAAGGATTTGAAACTACGTCTTTGCGATCAATTATATAAGGTATGATGGCTGCGTGGCGAGCTCTCTTGATCGCTTTTTCTACCATCTCTTGGTATCTTTTTGATGTGCCAGTTAGGCGTCTTGGCATGATTTTAAATCTCTCTGACAAGCAATACTTCAAAAGTGAAGTGTCTTTGTAGTCTATAAAATCAATCTTTGCTTCTGTAAATTTGCAATATTTGCGTGAATATTTTCTTTTTTCTGCCATTTCTTTATCCTTTAAAATTAAAACGGTATTTCGTTATCGCCTTCAAAATTGTCAGCGTCAACATTTATATCAGGGATTTTTTCTTCATAATACTCTTG # Questionable array : NO Score: 3.20 # Score Detail : 1:0, 2:0, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTAGAATTTACTCCGTTGGAGTTTGAAAC # Alternate repeat : ATTAAAATTTACTCCGTTGGAGTTTGAAAC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-3.70,-4.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //