Array 1 191-43 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSOI01000006.1 Acinetobacter baumannii strain ABUH564 contig_6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 190 28 100.0 32 ............................ TAAATGGGTCGCGGCTATTGTTTCGATTGTGA 130 28 100.0 32 ............................ ACCAGATGATGTCCGTCTCTCATTTCAAATTA 70 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 3 28 100.0 32 GTTCGTCATCGCCCAGATGATTTAGAAA # Left flank : ACGTTGGGCCAAAACGCTATACAAACAACTTGCTAAAGGCTTTGGAGTTGAGTTTATTCGTGATGAAGGCAAAAACTCTCATGACTCTATTGCGGATATAGCCAACAGCTACCTTGATCATGGAAACTATATTGCCTATGGCTATGCAGCAGTTGCTTTAAATGGGATGGGAATTAGCTTTGCCCTCCCTATTTTGCACGGTAAAACACGTCGTGGAGGTCTAGTCTTTGACCTAGCTGATCTAGTTAAAGATGCTTTTGTAATGCCACTCGCTTTTACATGTGCAGCAAGAGGATTAAATCAAAAAGAATTCCGAATGCAGCTTATTGAAACATGCCAAGACCAAGATATTTTAGATTACATGTTTAGCTTCATTACTGACATATGTAGTAAAATCAAATAAAATCATACTTTTAACCCAAGTACCTCATAACGAAGTATTTTCACTCATTAAAAACTTATATAATTGATTTTAAGAGTTTTGTTTTAACTTAACTCTA # Right flank : ATAAACAAGATAGCAGTATCAAAAAAAAAAAAAGTGCGTCCTA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGTCATCGCCCAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: R [matched GTTCGTCATCGCCCAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-3.80,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-81.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 5281-8003 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSOI01000006.1 Acinetobacter baumannii strain ABUH564 contig_6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 5281 28 100.0 32 ............................ TACACCTGATTTAATTGATGTACTTAGCAACT 5341 28 100.0 32 ............................ ATACTGGCAAAAACTTGATGATGTTTGTGAAG 5401 28 100.0 32 ............................ CTAAGGCGGTGGCTCTAAACTCACAGGCAATA 5461 28 100.0 32 ............................ TGAATTTGAAAAAATCTGGTCTTCACATAATT 5521 28 100.0 32 ............................ CAACTAAACTATTTAATGTAGTCCCTGTTACT 5581 28 100.0 32 ............................ CGAAGGTGCTATGGTTAAAAATTAAGTTCTAT 5641 28 100.0 32 ............................ TAATCGCAGTACCTTACAAGGTATATGAAAAC 5701 28 100.0 32 ............................ AATAAATCCCGAAGCTTAGATAGCATCTTGCT 5761 28 100.0 32 ............................ TGAATCGCTGCGTCGTTAATAGGGTTTGTTTC 5821 28 100.0 32 ............................ AATCCTATAAAATTTAAAAGTGTTGATTTTAT 5881 28 100.0 32 ............................ AACTCATACAGCGGGTCCAAGAGCCTATGGTA 5941 28 100.0 32 ............................ AAGACCAGTTTTGAAGGATATTAACTTTTTAT 6001 28 100.0 32 ............................ TCGTGCTTGGGTATCACATATTGATGTGACTT 6061 28 100.0 32 ............................ CACTAATCTCTTTGATTTAATTAAGTTTCAAC 6121 28 100.0 32 ............................ ATCCGCATCATCAAAAATCGCAAGTGGGTTTG 6181 28 100.0 32 ............................ AATAACGACGGTTGCGCTGTTGCACGTTCAGC 6241 28 100.0 32 ............................ TTGATGAGAAACTGTTATTGTGTATGTCTCAC 6301 28 100.0 32 ............................ ACGACAGGTAAATTGGTTGCCATGTGTATTGA 6361 28 100.0 32 ............................ AATTGTAGAAAGCGTATCACTTATTTGCTTAT 6421 28 100.0 32 ............................ ACGGATTACCTACAGGTTTACCAGTTGCATAA 6481 28 100.0 32 ............................ TCTTGAAGGTGAGCCAACAAAAATCCATTTTT 6541 28 100.0 32 ............................ GTTTAAATCCATAAATGAATTTTGCGGTTTTT 6601 28 100.0 32 ............................ AACAATTGCCTGACTGGTATGAAGAACCAGTA 6661 28 100.0 32 ............................ AATGTACTTTAATTTCCACTCGACACCAGTTC 6721 28 100.0 32 ............................ CATGACCGAAACAGCCAAAAAGGTTTTATGTA 6781 28 100.0 32 ............................ TAAAGGATAGTTAGCTGTAGGCCCTGCGGTTT 6841 28 100.0 32 ............................ TTATAGTTATGTGTGTGATATCGTTAAGCTGC 6901 28 100.0 32 ............................ TAGCACAATCCAAACCTCAATAAAAAGTAAGA 6961 28 100.0 32 ............................ GAGCCAATAAGATCGCGAAGTATGCGGAAATC 7021 28 100.0 32 ............................ ACAGAGAAAACCCCACATGTTCGAGGGACTGC 7081 28 100.0 32 ............................ TGCCGGAGCGGTCTTGTCATTGGCGAACCCGC 7141 28 100.0 32 ............................ TATGCGATTTGATAATTAAATTGCGATACTGG 7201 28 100.0 32 ............................ GAAATAAAAAACACCTGATGAAAACAGTTCAC 7261 28 100.0 32 ............................ ATAATCACGAATATCACCAGTAAACCAGTGAT 7321 28 100.0 32 ............................ TTATTGGTCCTGGTCAGTGGAATGGTGATTCT 7381 28 100.0 32 ............................ TGGGTAAAAGCCGATGGATTAATCATCTTTTG 7441 28 100.0 32 ............................ ATTAACAAGAGTGGAATTTATTGAACTATTAA 7501 28 100.0 32 ............................ TCTGGGTTCTTTTCGCGTGTATGGGATACTTG 7561 28 100.0 32 ............................ TGTAAAGTCATTCGTAATAACCGTTATACGGC 7621 28 100.0 32 ............................ AAAACCAATCAAATAACGGTTATGTGGCCACA 7681 28 100.0 32 ............................ CATAGCGACATATAGTTTTGCCCGGATCTGAT 7741 28 96.4 32 ..................A......... TGTTTCGCGTTGAGGTCCGGGTAATCGCCTAT 7801 28 78.6 27 ....C.....CTCC..........T... GTCTTGTATCCTGATTTCAAAGATTCA 7856 28 92.9 32 ....C....T.................. ATATCACGCGCCATTGCAAGTTTTCTACCGAT 7916 28 89.3 33 ...A........CC.............. TGATCTTTAAGATTAAGCATCCGTTCTGTTTTT 7977 27 85.7 0 ...TG.......C...........-... | ========== ====== ====== ====== ============================ ================================= ================== 46 28 98.8 32 GTTGTTCATCGCATAGATGATTTAGAAA # Left flank : TTTAAAAATAGAAGCCGTTTTACCTGCATTTGCCTGATAATCGGTTGGAATAAGGAAGTCTTCATTTAATAAAGTTCGAGCACTGAGATAGGGTAAATCAAGTGCTTGTTGTTTACTTAAACGAATTCCACCTTTTTCAATATTGGAATTAATCGTCTTTAAACTAAAGTGTACCGATTCTTCTAAAGCGTTTATAAAAATATCAGTTTGTGGTTCAGGCATTATCTTCCCCGTTTTTGTTATCTAGCCAATTTTTAACACATTATTTGAAAAATGAAAGTATTGAAGGTGAGAGCTGCGACAAATTAAGTCGTAAAGACAATTGGATGAAAATATTATATGCTTCATAAATTTAGCCTAAGACGATTAGGTTATATTTTTATAAAATTAGAAAAATTAATATAATTCAATAGATTATATTGTTCTTCTATTTTGAAGGTTTTTAATTCATTAAAACTTTATATTATTGTTTTTAAGAGTTTTGTTTTTACTTAGCTCTA # Right flank : AGAGTTTCTTTCAAAATTTAAGACGACGTATTTTGTCGTTAAAAGGTTGTATTAAGCTGATAAAAACTTTCTCTTTTTAAAACAAAAGATTATATTTTTATGATATTTAAACTTTAACAATAAACTATGCATGTCATTTTCATCTCGGCTTGTGAAAAAAGAGCTTTAAAGAAAACTCGAGCAATTTTGGATAGCTATGCTATTCGTACAGGACATTCGTCTTGGCAAGCACCAATGACAATGGACGGCTTAAAAGAAATTCGTAGTGCATTAAAAAAAGTAGCTACCCGACAAACTGCGGTGGCCGCTTACATTAATTTTGGTGTACGCAGAATGAAGCTTGCATGGGTTGTGGGAGCAAAACATAAATTTGCACACGATGGTGCATACCCAGTTGCATCGACTAAGAAACAGCAAAAGTTACTCATGCTTGATGAGTGGGTCAAAGTAAGTAGCTTGTTGGCAGGTGCAGCAGGAGACATGCATGATATTGGTAAGGC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTTCATCGCATAGATGATTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTGTTCATCGCATAGATGATTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-16] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [83.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 73-2261 **** Predicted by CRISPRDetect 2.4 *** >NZ_MSOI01000013.1 Acinetobacter baumannii strain ABUH564 contig_13, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =============================== ================== 73 29 89.7 31 ....G.......CC............... CAAAGTGAATCGGCTCCTAATGCAAATGACC 133 29 89.7 31 ....G.......CC............... GAAAACCAATATGCTGCCTAATTGCCATAAG 193 29 86.2 31 ....A.......CC..............G ATCTGCGTCCATTTGTACTTGCTGCGGGTGC 253 29 96.6 31 ............................A TATACAGCACCGCTTAGTGCGACGCGGTCAT 313 29 96.6 31 ............................G CCCACAGGTTGAGCATCAACGGCCATCGAGA 373 29 96.6 31 ............................A TCATAGAGCTCACTTTGTCGTTGAGCCTGCA 433 29 96.6 31 ............................A GAAGGCCCGTAATTTAACTGTAAGCCGTGGT 493 29 100.0 31 ............................. CTTCCTGAGTTTTAATCCCATTTGCCTTACA 553 29 93.1 31 ......T.....................C ATCTTCGCCAATTGCTTTTGGAGAGTTGCTA 613 29 100.0 31 ............................. TCAGGGAATTATCGTGAAACTTTCATTGACT 673 29 100.0 31 ............................. GCACCAGCTGCTGGCTGGTTGAAATCTGCAA 733 29 96.6 31 ............................A GAAGGTGCAGAGTTTTGGGACTTTGGGTGGT 793 29 100.0 31 ............................. GTTTCAAAAGCTACACCATCAAAACCATTGC 853 29 100.0 31 ............................. ATTTAAGTAATAAGTTTAATAACGACCTAGT 913 29 96.6 31 ............................A ACACGTTCTCTATATCGCTGTTTGCGGTCAT 973 29 100.0 31 ............................. TCAGTTGGATATGCCTTTGATACCAAGAAAC 1033 29 96.6 31 ............................G CCTGCAGACACGGATTTACGCAGCTGATCGA 1093 29 96.6 31 .........................C... AACCAAACTATGTCATCGATCGGAGATTTCA 1153 29 100.0 31 ............................. TAAAATAAATGCCTGTGGTTTTTTCTTAACT 1213 29 96.6 31 ............................A GTTTCCGAAGTTGAATTACACTCGCCAAGTT 1273 29 100.0 31 ............................. AACACAGTGATTTGATTACCTTGAGCAACCC 1333 29 96.6 31 ............................A TCTTGATGCCGAGGTCTTTAGCTTCTTGAGA 1393 29 100.0 31 ............................. CATCCACCTTTGATGAAACGGATCCACGCAA 1453 29 100.0 31 ............................. CTTGTGTGACGGCCTCCACTCCAGATCCCGC 1513 29 100.0 31 ............................. TAAGCTTCAAAAATAGCCATTGATTATAAAA 1573 29 100.0 31 ............................. GACAACTTTCCACGGCAATCAGGGCTTTCCA 1633 29 100.0 31 ............................. AAAGATGCACGTGGCCTAATGCAAGTTATTC 1693 29 100.0 31 ............................. TTAAAATTAGGTGCTGAGTTACCACGGCTCA 1753 29 100.0 31 ............................. AAACCAAGAACTTGAAGATTTTGATGCTTAT 1813 29 100.0 31 ............................. AAAAATAGTGTGTTAATTATTTATGATGAAA 1873 29 96.6 31 ............................C GTATACATGCACATCAATACTATATCCCGAT 1933 29 96.6 31 ............................A TACTATTATAATGATCTAAACCCATTACAAC 1993 29 96.6 31 ............................A TCATCAATAAGTTGGCCTTGATTTAAATAGT 2053 29 96.6 31 ............................A GATACAAACGAGTTCGCATCTCGACCAGAAG 2113 29 96.6 31 ............................A TTATCCAGATAAAACCATATCTACAAAGTGG 2173 29 100.0 31 ............................. CAACCTGAACACAGACATACATGTTCTATTG 2233 29 86.2 0 ...GC...................AT... | ========== ====== ====== ====== ============================= =============================== ================== 37 29 97.1 31 GTTCTTCATCGCATAGATGATTTAGAAAT # Left flank : CGACCACTGCCCCTGCCTCCTGGGCCAGTTGATTTTTATAATATAGACTAGTGATGCTTTGTGTCAATTTAAG # Right flank : TTTGAATCTTAAAAAGAGAAAACCCCGAAACTTTCGTTTCAGGGCTTTTCACGAATCTTGGTGGAGATGGCGGGAGTTGAACCCGCGTCCGCCAGCACTACGCTCGAGAATACTACATGCTTAGATATCGTCTATTGTTTTAACACCAAGTGACCCGACGAACAGGGTACAAGGTGCGATCCTCTAAGTTTGGTATAAAGCCCCGAGGCTTGACTCTATACGGACTTGTGTGCGTGCGCTTCAGTCGGGTTCCCAGACCACAAGTATTCTAGGAAGCGGACAAGCGGCCCTTAGGCAGCTAGAGCGTAAGTTTCGTCGTTTGCGACTATTTAAATGCAAATTTTATTTACGAGAGAAAATGCGCTCTCGGCATGCATCTATGAGTTTCATCACCGGCGTCGAAGCCAATAACATCCCCATGAATGTCTGCACATCATAGCATAACTAAAATAAAATGCTGTGCATTTTATCAACAGTCTGCCACTGATGAACATACTTAC # Questionable array : NO Score: 5.78 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.67, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTTCATCGCATAGATGATTTAGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.86%AT] # Reference repeat match prediction: F [matched GTTCTTCATCGCATAGATGATTTAGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-4.70,-3.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [4-4] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [63.3-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //