Array 1 44853-44525 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211053.1 Zymobacter palmae DSM 10491 Q387DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 44852 28 100.0 32 ............................ TTGCCCGAGGCTTTACTCATCGACATGACCGA 44792 28 100.0 32 ............................ TCTGAACCCTTACCACCTCCCACCGTGTACTT 44732 28 100.0 32 ............................ ACTACTTCGACACCCGATCGCTTCGATTCGCT 44672 28 100.0 32 ............................ CTCATTGCTGTGCTGTCGCAGCAGCAGTTCGC 44612 28 100.0 32 ............................ ACAGTGAGCTGTGGCGGGCTGATGGAGGCCGC 44552 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 6 28 100.0 32 GTTCGCTGCCGCATAGGCAGCTTAGAAA # Left flank : AGCGTTGGCAGAACTGATGACGACAGATTGGCTGAAAGGTATGCGGGATCATCTTGACGTAACGGAGTGTCAACCTATTCCTAGCCCACATGGCTACAAAAAGGTACAGCGCCGTCAGTTCAAAACAAATGCTGAACGTATACGTCGTCGGCATGCATCTCGTCATGGCGAAACGCTGGAGGAGGCAAGATCTCACATACCCGACAGTGTCATAAGGCCAGTTGAGCTACCGTTCGTGCAGTTGAACAGCCAAAGTACACACCAGAAATTTTGCCTGTTTATTTCACAAGGTGAGCTTATGACACACCCAGCCCAAGGGACTTTCAACACCTATGGGCTTAGTAGCACCGCGACCATCCCTTGGTTCTAACCCTTTTTTTCGCCCCTTTCTTAACTTATTGATTTATAAAGGGGCGAAATTTAGCTTTTAAAAAAGGGTCTAGAATAGAAAAAACCTATATTTCTTTTTATATTCATATGATTGAGGTGATAATCGCCTA # Right flank : GCCGGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [1.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 54807-55016 **** Predicted by CRISPRDetect 2.4 *** >NZ_KK211053.1 Zymobacter palmae DSM 10491 Q387DRAFT_scaffold00006.6, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 54807 28 100.0 32 ............................ TTACGAGACGCCGCTAGCGCACGCAACACAAC 54867 28 100.0 32 ............................ AGTAAACGTGCGGCTATCGCTGACTGTGCCAT 54927 28 92.9 32 ...T.......................C GGCACTGATCCCGGTGGTTTGACCACCGGCTG 54987 28 75.0 0 A......A...T.....A...C.G..C. | T,T [54997,55004] ========== ====== ====== ====== ============================ ================================ ================== 4 28 92.0 32 GTTCGCTGCCGCATAGGCAGCTTAGAAA # Left flank : NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN # Right flank : ACACTAATTAGGACGTTCTCCACACAGCATTCCAATGAATTGATAACAAAAAAGCTTGCAATTTAAAGTCAGTTGCGTAGAATGCGCAGCGTTCACGGCGAGACGCCAAGCAGTTAGGCGCTTCACTTGGACTGTGTAGGACCGTAGCTCAGTTGGTTAGAGCGCCACGTTGACATCGTGGAGGTCAGCGGTTCGAATCCGCTCGGTCCTACCAATCTTAGACATATCATGCGTTGATATGTATCAAGAGCGTCGCAGCGGTTTTCGTCGTGTTATGGCGAACTGTCGATCTCTTTGCAGGACCGTAGCTCAGTTGGTTAGAGCGCCACGTTGACATCGTGGAGGTCAGCGGTTCGAATCCGCTCGGTCCTACCAGTTGCCAAACCCCGCTGAGACGATCGGCGGGGTTTTTTGCGTGCGCGTTGCCTAAGCAGTCCGTGTATATGGCCGCAAATAAAGCCCTTTATCAAGCCATGGTGTGCGTCGATAACAGTGGTGGT # Questionable array : NO Score: 5.46 # Score Detail : 1:0, 2:3, 3:0, 4:0.60, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-61.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0.27 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 75226-76812 **** Predicted by CRISPRDetect 2.4 *** >NZ_JHVG01000016.1 Zymobacter palmae DSM 10491 Q387DRAFT_scaffold00010.10_C, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 75226 28 100.0 32 ............................ AAGTGGGTGAGCTGTGCTGTCGTGCCCATGAA 75286 28 100.0 32 ............................ GGCAAATTCTAAGCCAGCAGAGCACTTAGAAT 75346 28 100.0 32 ............................ GACACACTGTCGGAAGGACTAAGGCGACTGGC 75406 28 100.0 32 ............................ ATGCCGCCACCGCGCCATTCTTCGGTTTTACG 75466 28 100.0 32 ............................ ATTAGTGACGCGACCGCTTCCTCGACCAGAAT 75526 28 100.0 32 ............................ AAAATGGCTTCCGTGAGCAAATCGTGACCAAG 75586 28 100.0 32 ............................ ATTAGTGACGCGACCGCTTCCTCGACCAGAAT 75646 28 100.0 32 ............................ AAAATGGCTTCCGTGAGCAAATCGTGACCAAG 75706 28 100.0 32 ............................ ATCGGGATGCCCGCGTTGCGCTTTTGGAATAT 75766 28 100.0 32 ............................ AAAATGGCTTCCGTGAGCAAATCGTGACCAAG 75826 28 100.0 32 ............................ ATCGGGATGCCCGCGTTGCGCTTTTGGAATAT 75886 28 100.0 32 ............................ AACACTGAGGGGAACCGTCATGCAAACCGCCG 75946 28 100.0 32 ............................ GTTAAGCAGGCCGCCAATGTACAGCGCTTGGT 76006 28 100.0 32 ............................ ATCTTCCTTGTTTAAATGCAAGTAATCTCATG 76066 28 100.0 32 ............................ ATCGCAAAGCCTGCTGGCTCTGGTTTTTTGTC 76126 28 100.0 32 ............................ TGCTTGCTCTCTACCTTCACCTTGCCGGAACG 76186 28 100.0 32 ............................ AGCCTCGAAGGCTGTACGGATAGCCTCCCAGT 76246 28 100.0 32 ............................ TTCTTATTAGCCGTAATAGTTCGTGGACGTTG 76306 28 100.0 32 ............................ ATTCAGCACCAGAGTCTTTGATGCGCTCAATT 76366 28 100.0 32 ............................ TGAAACGGCTCTTGCTCCGGCGAGGATTGCTC 76426 28 100.0 32 ............................ TCTCGCAAGTCATGAAGATTCATGCAGTCATG 76486 28 100.0 32 ............................ AATACCCGCCAGCATAGTCATTATCGACATAT 76546 28 100.0 32 ............................ ATCGGGCTGTCCATTTCCAAAGTGCCGTCAGC 76606 28 96.4 32 ..................T......... AAGTGGTCGTCGAAGGCTCCCGAGGACATCGT 76666 28 100.0 32 ............................ ATGCCGGATATCGTCGCGCAGCGCGATAGAGA 76726 28 96.4 32 .............T.............. TGCAAACAAGTCTGCAGGAATCCTACAAACTA 76786 27 85.7 0 ..G..........T......-..T.... | ========== ====== ====== ====== ============================ ================================ ================== 27 28 99.2 32 GTTCGCTGCCGCACAGGCAGCTTAGAAA # Left flank : CCGAGAAGACCCAAGGCAGCAAAGAGGTCTATACCCTCAAGCCGAAAAGCACCGACTCACTGTTCGACCGCTTGCAGATGACTTTCGACAGCAGCCGACTGTCCTCGCTCGACATGTACGATGCCTCTGGACAGCATACCCAAGTGGCTTTCAGCAACGTACAGCCGAATGCCCAGATCAGTGATAGCACTTTCCACTTCCAGATTCCCAAAGGGGCGGAAGTGATTCGGGAATAACTATCCCCGAACTGCCTCATAAAGAAATGCCCTCGCAATGAACTGCACCCCCAACGTTGGATAAAGCAAGTCCAACCTTCGGGGTGTTTTTTTTATGAGCACGGCATGACGACTTTAGCAAATGCGCTGGTGAACCCTTTTTTTGAGAGCAATGCTAACGCGTTGTTTTTACAGAAGCCGAAGACACCGCTCCGAAAAAGGGGTGAATGACTCGATACTAGTCCTTCCCCTTTCGTGACAATGTATTAGGATAAAATGCGTCTA # Right flank : AATAAGGGGATTGCGCTCTGCCTGATGCGTTGTTGAGTGGTTTTCCTCTCATGCACTGGTTCATAGGGCGATGTTTAGGTATAACCGTTGGCTTCCTGCCTTTCTTATGAAATACCGCCATGACCCGCGCCGAGCGTCTTCTTGTTCTTATCCAGAAACTGCGTTGCTACCGTTATCCGGTAACGGCGGCGGTACTAGCCGAATCTCTTGGTGTAAGTAAGCGTACGCTATACCGTGATATCGCTCAGTTGCAGCATCAGGGGGCGCGCATAGAGGGTTCTGCAGGCGTTGGTTATATGCTACGCGAGGGCTTTATTCTGCCGCCGTTGATGTTTTCATCGGATGAAATCGAGGCGCTGGTGCTGGGGTTGCAGTGGGTCGCGCAGAACGCTGATGAGATGCTCGGCCAGGCGGCTGTAGATGTGCAGGCCAAGGTGCGGGCTGTGCTGCCGGAGCGAATGGCGGAGGTGCTGGATCTCCCTGCGCTGAAATTGGGGCCG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //