Array 1 2071-172 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKLW01000008.1 Bacteroides pyogenes strain KG-31 NODE_8_length_110260_cov_22.347752, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ===================================== ================== 2070 29 100.0 36 ............................. AAAGGTGATAAAGGCGCAACCGGCCCCAAGGGAGAT 2005 29 100.0 34 ............................. GCTTTGCAGGCAACGGGTTTAAGCTCTACAAGGA 1942 29 100.0 37 ............................. ACTCGGGCGGCAAGACATACATCGGTACCTACACCGA 1876 29 100.0 36 ............................. GAGCCAAGGGTGCCGACGGCAAGACGGCATACACCC 1811 29 100.0 36 ............................. ATCACCCAGTCGAGCGACATGGAGTTGGCAGACATG 1746 29 100.0 36 ............................. AGCATTCAAGTTTATCGGCGAGGGCGGAAAGATTAA 1681 29 100.0 35 ............................. ATATAATCAGATATTTACCAAGTCATCTGACCCTG 1617 29 100.0 35 ............................. TGAGGACAGAACGTCCGGCGCCGCAATCTTCAAGG 1553 29 100.0 35 ............................. TACATCATCATCCCAGCTTTGCGGCTGCAAGAGCA 1489 29 100.0 37 ............................. GAGGTTGTTACAATGAACAAGGTAGACGTTACTGTTG 1423 29 100.0 36 ............................. CGTCTCCGCTATCTTCACTACGTATTCGAAGTCCCA 1358 29 100.0 35 ............................. GTGCGCAAGCCGCTATCACGCAGGGGAGATAAAGA 1294 29 100.0 35 ............................. ACAGAAAGAGGACGTTTTGCGAAAGAAGGTAGACG 1230 29 100.0 34 ............................. AAGTATGAATTGATTTTAAAAGTGGAACAGGGGA 1167 29 100.0 36 ............................. GAAGTCCGCATAATTAGGAGAGTACTCGTACTGCGT 1102 29 100.0 34 ............................. TGGTAACGGCTCTTTCCCCTCTTTTATCTTCTCG 1039 29 100.0 36 ............................. GATTCAGGTAGTAATATTCCGAAAGAATCAACGAAC 974 29 100.0 36 ............................. GTATGTCGGATGCCTGGATAATGAAAAACATCGGCA 909 29 100.0 34 ............................. AAGGGTGATCAGGGCGTTCCCGGAGCCAAGGGCG 846 29 100.0 36 ............................. TGGAGTAGAGGGCATCGAGGAGAAGTCCGCGGCGGA 781 29 100.0 36 ............................. GATATGCTTCAGTCAATTGGAAGTCTGCTTCCGGCT 716 29 100.0 35 ............................. TTGCAATCTGGCGATCAATAACGGAGGTGAATTCA 652 29 100.0 34 ............................. AGAAATATGCCGAGGAGGAGGAACGCCGCCGTAA 589 29 100.0 37 ............................. AGAAATGAACGAGCTTAAACATAATCTGCGAGTAGAG 523 29 100.0 36 ............................. ATAACTCCTGTCAGAAAGCGGAGTGTTGGCGGGAAC 458 29 100.0 35 ............................. TGACGATTTTCACACCCGGAGCGCCCAGGGCGGAG 394 29 100.0 35 ............................. AAACATAATCGTGTATTTTAAGATTAGACAATGCT 330 29 100.0 36 ............................. GGCGAACCTTCGATAACAAGGAAGCCGCAATTGCTT 265 29 100.0 36 ............................. ATGATACACTGTCCGCTACCGCGTTTCGCAGCCTTG 200 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ===================================== ================== 30 29 100.0 36 CTTTTAATTGAACCATTTGGAATTGAAAT # Left flank : AAACCGTTTAAAATGTGGTGGTGAATAATGTACATAATTTTAGTTTATGATTGTGGCGAAAAGCGTGTAAGTAAAATGTTGAAGCTCTGTCGGAAATATTTGAATTGGATACAAAATTCTGTTTTTGAAGGTGAAATTTCAGAGGTAAAACTAAAAGAATTAACTTTGAAAGCTCAAAAAATAATGGATATGAATACTGATAGTTTGATTATTTTTTCCGGTAGAAGTGAGAAGTGGCTTGACAAGCAAATTGTTGGGAAAGAAAGAAGTAGTATAGACAATTTTTTATAATTGTGCGTCGATGTTCTTCACTTCAAGCAGATATTAGGAAAAGCCTGTCTATTATGTTCTTTGACATTCTGAAAATCAATGTATTATAATGTTGTCGATAACCAGTGATTTTCTTATCATTGAATATCGACAAGTTTTTTAAATTTAAAATGCTCTTTCTGAAAAATATTTGATTGAAAATCAATTGCTTATTATTCCTTTAAGTATGG # Right flank : TAAGAACTATCCATTAAAAAAAAGAACTGCGGTTTCTTTTAATTGGTAAGCCTCCGGTAAACCACGTATTTTCTGCAATCTCTTCGACCAGTATCTTTGTGCCCAAAAAGTAAAACTTATGATGACACGAGAAGAAGTTGCAGAAATTATTATGTACTGCAAGGAACACAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTAATTGAACCATTTGGAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.30] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,4.5 Confidence: HIGH] # Array family : NA // Array 1 179-1684 **** Predicted by CRISPRDetect 2.4 *** >NZ_VKLW01000003.1 Bacteroides pyogenes strain KG-31 NODE_3_length_159754_cov_23.292544, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 179 47 100.0 28 ............................................... CAACAAGAAAGCGGCCACCCCCTCCGGG 254 47 100.0 30 ............................................... TTGTCCGGCGTAGGAATAGCGAACTCAATA 331 47 100.0 30 ............................................... TACAGTATTTAATGATGCTGTTGTGATTAT 408 47 100.0 30 ............................................... TACGTTCTCGCTGCATCTGAAATCGTATCC 485 47 100.0 30 ............................................... ACCTACGATCCCGCTCAGCGGAAATTCATC 562 47 100.0 30 ............................................... TACACTCATTGGTCATCTGCTTGATGATAT 639 47 100.0 30 ............................................... TAATTACTCTACAAAGATACTATGAATTTT 716 47 100.0 30 ............................................... AATCATCTCATTATATGTCAATCGAAAGTT 793 47 100.0 30 ............................................... GGGCTCGACATGGAAGGATATTCCGTCTAT 870 47 100.0 30 ............................................... ACTTTTTATAATAGCGTTTATATCATCTTT 947 47 100.0 30 ............................................... CGCAAGACCAGCCTCTTGAACGCTGAACGA 1024 47 100.0 30 ............................................... ACTTTTTATAATAGCGTTTATATCATCTTT 1101 47 100.0 29 ............................................... AAATTTGTAGGAACTACAAGATTCATTCT 1177 47 100.0 30 ............................................... ACAGGACTTTACTGATAATGATGGTATACT 1254 47 100.0 29 ............................................... ATTATTATTTTTATAACCTTTTCGAAAAG 1330 47 100.0 30 ............................................... TACAAAACAAAATGAGCAAAACGAAAAAGA 1407 47 100.0 30 ............................................... TCTGTAGGCAAAAGCAGAAACAAGCTCTGC 1484 47 100.0 29 ............................................... GGCTCTATCTCAATACGACTTATCTCAGT 1560 47 97.9 29 .......C....................................... AGGAAGATCCTCACAAGGAAAATAGCGCT 1636 47 85.1 0 ..............................G.CCG.G....T....A | C,T [1666,1675] ========== ====== ====== ====== =============================================== ============================== ================== 20 47 99.2 30 GCTGTACTCAATGGTTCAAAGATACTAAATTGAAAGTAAATCACAAC # Left flank : CTTTGTGTTCCTTGCAGTACATAATAATTTCTGCAACTTCTTCTCGTGTCATCATAAGTTTTATTTTTGGGCACAAAGATACTGGTCGAAGAGATTGCAGAAAATACGTGGTTTACCGGAGGCTTACAAATTGAAAGTAAATCACAACACATCTTATAAAACAAAACGAAATGTGTTAG # Right flank : AAAAGGAGTAAACAAGTTGGCAAACCAGCCTACAAACTTTTTCCATGGAGAGCGTTTCTTCCAGAATTCGGGCGTCATTTCTGTGCATTGTCCGATGTCCGCCCGGAAAATATTGTTTAATTCGCCTGTGACTTGTTTGTCGAAAATGAACGCGTTCGTTTCGTAATCATAGCGCAGGCTGCGGCTGTTGAGATTGGCCGTGCCGACTGTGCAGAAAAGGTCGTCCACCATCATGATTTTGGAGTGGTGGAATCCGCCATTGTACATATAAACGGTTGCTCCCCTTTTCATCAATTTATGGAGTTTGTAGAGCGCAGCTTCGGGGGTGAAAGGGATGTCCGCCGCGGTAGAAACCATAATGGAAACGTTTACTCCCCGATCGATGGTTCTTTTTATTGCTTTGTTGATGGAGGAGGTCGGAACAAAATAGGGGTTTACGATGTGTACGTTCTTTTGTGCGGCATAGATGCTTACGGCGTAGGCGTGACTCAACATACGGT # Questionable array : NO Score: 3.22 # Score Detail : 1:0, 2:0, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTGTACTCAATGGTTCAAAGATACTAAATTGAAAGTAAATCACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.09%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.90,-1.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : NA //