Array 1 85329-86149 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXCZ01000005.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SAL3277 NODE_5_length_210176_cov_4.4779, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 85329 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 85390 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 85451 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 85512 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 85573 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 85634 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 85695 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 85756 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 85817 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 85878 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 85939 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 86000 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 86061 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 86122 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================ ================== 14 29 98.5 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTAGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 102408-103943 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXCZ01000005.1 Salmonella enterica subsp. enterica serovar Heidelberg strain SAL3277 NODE_5_length_210176_cov_4.4779, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 102408 29 100.0 32 ............................. GGGAAAAATCAATAAAATCAATGATAAGCAGT 102469 29 100.0 32 ............................. GCTGGGTAGTGGAGTAATCATTATGTGTGGTG 102530 29 100.0 32 ............................. CAGTGAGATGCCGCCAATTTGTCAAATAAAAT 102591 29 100.0 32 ............................. CGTCACTACCGAGACCGAGACCGAGACCGAGA 102652 29 100.0 32 ............................. CCTTTAATCGCCTCTTATCGCCTGGATTGGTT 102713 29 100.0 32 ............................. TTAAATCCATATACGGGCCTTGCGGGTTTGCC 102774 29 100.0 32 ............................. GCGGCTCTGTGTTGGGCGATGGCTCCGGTGGT 102835 29 100.0 32 ............................. GCGCGCCAATAATTTTATTGACGATTTCATCA 102896 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 102957 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 103018 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 103079 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 103140 29 96.6 32 ......T...................... GTTTGCCGTATCTTCGATCATACCGGAACGGT 103201 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 103262 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 103323 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 103384 29 100.0 32 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATT 103445 29 65.5 13 ..............GA..C.TTCC.G.GC ACGTTACTCGATC Deletion [103487] 103487 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 103548 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 103609 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 103670 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 103731 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 103792 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 103853 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 103914 29 96.6 0 A............................ | A [103940] ========== ====== ====== ====== ============================= ================================ ================== 26 29 98.1 31 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.10 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //