Array 1 26155-27322 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_NHOI01000025.1 Yersinia intermedia strain CFSAN060536 CFSAN060536_contig_25, whole genome shotgun sequence		Array_Orientation: Forward

  Position	Repeat	   %id	Spacer	Repeat_Sequence             	Spacer_Sequence                 	Insertion/Deletion
==========	======	======	======	============================	================================	==================
     26155	    28	 100.0	    32	............................	AGCAAATCCAGCCTTGTAGTTTTCAACTTCTG	
     26215	    28	 100.0	    32	............................	GCAAGCGCGTACGGTCGATGCCGCCCTGGTTT	
     26275	    28	  96.4	    32	....................T.......	TGTACGGTAGCCCGGAGATTCTCCTGCTTTCG	
     26335	    28	 100.0	    32	............................	GTCTTGCTGATTTCTCTAATGATGAGGGTGTG	
     26395	    28	 100.0	    32	............................	CCACTCACTGTGAACTTCGCCAGTATCTTTAT	
     26455	    28	 100.0	    32	............................	ATTCATGGAGCGATGGACTTCACGGCCCACTG	
     26515	    28	 100.0	    32	............................	ATTATTCCCCGCAGAGAAGTCAACCTATCAGC	
     26575	    28	 100.0	    32	............................	TGTGTGGCAATCAGACGATCAATCGCCTCGAT	
     26635	    28	 100.0	    32	............................	AAAAAGGATACGTAAAAGATACGCGGCTCCTT	
     26695	    28	 100.0	    32	............................	ACTGCCGACGAGGACGACGACAAGAAGGACAA	
     26755	    28	 100.0	    32	............................	CGCACGGCGGGCAAACCGGGGGGCCAAGAAAC	
     26815	    28	 100.0	    32	............................	AGTGGCTGTTACTGGCGTCACTTTAAACAAAA	
     26875	    28	 100.0	    32	............................	ATAACCATGTGAGGGCAATAGTATGAATTGCG	
     26935	    28	 100.0	    32	............................	GGGCGCATAGTGCATCGGCAATATGGGAGTTG	
     26995	    28	 100.0	    32	............................	GGGTGCTTTACCGGGTGCCGGGGCAGCATTGC	
     27055	    28	 100.0	    32	............................	TGGCTAAAACATATGAAACCGAAGTGGCGGTA	
     27115	    28	 100.0	    32	............................	TGTCATCGCTGGTGTTGAGATTAACACCGATA	
     27175	    28	 100.0	    32	............................	GAAAAGACCGTGAGCGAAGGCAGAAGAAGAAA	
     27235	    28	 100.0	    32	............................	TCGCTCTCGATCAACTACCATCTGGAGTCTCG	
     27295	    28	  92.9	     0	...T........A...............	|                               	
==========	======	======	======	============================	================================	==================
        20	    28	  99.5	    32	GTTCGCTGCCGTGCAGGCAGCTTAGAAA	                                	       

# Left flank :   CGCAAGACATCGATAATTTGATGCAGCAAAACTGGTTACAAGGTATGCGTGACTACGTTCGATGCAGTGCGGTATTGCCGGTGCCTGAGGCAGTACAATACCGAACGGTGAGGCGAGTACAGGCAAAAAGCGCCCATAACAAGCGGCAGAGATCGATTGCTAAAGGGTGGCTAACTGAACAGCAGGCGTTTGAACAAATACCCGACACCCAACAGAAATCTCTCAGGTTGCCTTTTATTCAACTGCGTAGCCTTTCGAACGGCAATACGATGCGAATTTATATTCAGCATGGCGAATTGCAGGAACAAGCTCAGTTGGGAAGTTTCTCTGCCTATGGTCTAAGTAGCAGTACCACCATACCCTGGTTTTAACCCTTTTTTTTCGGTTATTGCTAACTGATTGTTTTGTAATGGTGTAATGAGAGGGTGAGAAAAAAGGGTTTCTCAGTCAATATCCTGATTTATGTTTAATAAACAGGGTGATGGCATATTTTTATTACC
# Right flank :  ATGCGCCTATAGTGCCGGTGGTTCCAATGCGGGAAAAGGTGATGTGTTAAATGCAGGTTTGCCCCACCCTGCCAGTAGCCGACCCAATGCGGCCGAATGTGCCAGTCAAAGGTGGTGGCAAAAACGTGTTGATAGCCGCTATGGGGTATGCCGCCCTGTTCAATTGTTTGAAAAAAGGTGGCTTTTGCCCAATGCGTACCCACAATGAGCATCACAAATAGCAATGAATAGAACATTTGGCACAGCAAGTACAAGTAAATGGCTAACAGGATCGAAAAACTCATCTTTTCAGATAACAGCCAGTACGGAACTCCCAGCGCCAGCAAAAAATGTGCGCCTTTGCTGAACAGAAAAATGCTCCACCCACCGACGCCTTGCTGTGCCATACGTGGCGTGACCCGTGTTTGTCCGGCCCGGCCCGGCCAGTCAACCAGCCAGATGTACCAAGGAAAAGTCATTGCCGCGACCAATGGCCAGTACAGATGCTGCACCCGCATAAA

# Questionable array : NO	 Score: 6.23
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTCGCTGCCGTGCAGGCAGCTTAGAAA
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [6,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         F [matched GTTCGCTGCCGTGCAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-8.00,-7.70] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [1-2] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: F [70.0-50.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         F [5.55,0   Confidence: HIGH] 

# Array family : I-F [Matched known repeat from this family],   
//