Array 1 35108-37047 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIVA01000008.1 Escherichia coli strain 152 contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 35108 28 100.0 32 ............................ TCTGACGCGCCCTGGGACGCACACAGAAGCGT 35168 28 100.0 32 ............................ TGAGAGCCTCTGTAAGCGTTTTTCGCGCCTTC 35228 28 100.0 32 ............................ ATTGAGCCAGCGGCAGGCGGACAATCAGGGGC 35288 28 100.0 32 ............................ TGTGAGCGGATGCCGGGAGCCGACAAGCCCGT 35348 28 100.0 32 ............................ CGAATGTGGATATCAGAGTGGTGAAGTCACGG 35408 28 100.0 32 ............................ ACACGACAGAACCGCGCATCACGCAACCGCAG 35468 28 100.0 32 ............................ TGGTCAGGGCTGCGCCCCGACACCCTCGACAC 35528 28 100.0 32 ............................ GCTTCGTGGAATATTTCAGGGTTTCGGCCACT 35588 28 100.0 32 ............................ TCAGAAATCGGGACAGGATGTGGGAATGTCGG 35648 28 100.0 32 ............................ AAACTGAGGAACAATTCCGGTTTTATAGTCAC 35708 28 100.0 32 ............................ GAGTTTCGAATGATATGACAAATCTAAATAAG 35768 28 100.0 32 ............................ TGGGATATTCCGGCGACCTGGTACGGGGATGT 35828 28 100.0 32 ............................ AACTTCGTTAACAGCGACTGCCGAAGCCGTAT 35888 28 100.0 32 ............................ TGTTTGAGCTTCAAATTGCTCACCTGTTTCTA 35948 28 100.0 32 ............................ GATAAAAATAATATTGGTTACTCCACGATAAT 36008 28 100.0 32 ............................ GATCTCAGTGCGGGACTCTGCTTTCATCTCTC 36068 28 100.0 32 ............................ GCCTCAAAATCCCTTGCGTGTTTTTGCTCCCC 36128 28 100.0 32 ............................ ATAAAGATAATAACACAATCGTGTCTGGATTT 36188 28 100.0 32 ............................ AGGAACCGCGTCAGCCCCCTGCAAAGCTCATT 36248 28 100.0 33 ............................ TGGCGCGCCTGGAGGACATCCCGGAAGACCAGC 36309 28 100.0 32 ............................ GGTAACGGGTCAGGCCGACCGTGGAATACCGC 36369 28 100.0 32 ............................ GCCTGCAACCACTGATTGAGAGCTTCACACAT 36429 28 100.0 32 ............................ ATAAAGCGATCGACGCGGTTCCAGCCATAGAA 36489 28 100.0 33 ............................ TGATGCATCACAAACGGGAAGGGTAACGGGCGA 36550 28 100.0 32 ............................ AGACATCTGCTCAATAGAACGGGTGATCTCAA 36610 28 100.0 32 ............................ AGATCCAGTTCATCATCCAGCGCAGACTCTTG 36670 28 100.0 32 ............................ CGTCACCCGCGCAGCAGTCACACGGGCGCACG 36730 28 100.0 32 ............................ ACCGCCGGGGCGGTTTCCCCGATGAAAAGGAA 36790 28 100.0 32 ............................ GTGGCGCTAGCAATGAGATTTGCGGAAAAAAG 36850 28 100.0 32 ............................ GTGCTGCCCGCCAGCGTGGCGTAATTGTCACA 36910 28 100.0 32 ............................ AAAAAGTTGCGCCGCGTGACCGGCACTATAGA 36970 28 100.0 20 ............................ CTGAACGTTGAAGAGTGCGA Deletion [37018] 37018 28 78.6 0 CC..................A...C.CT | T,C [37036,37040] ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.4 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : AAATTCATCGTCGAGTTGCAGGTTCAGTTGGATCAGAAAGGTGTTTCTCTGGAAGTGAGCCAGGAAGCGCGTAACTGGCTGGCCGAGAAAGGTTACGACCGGGCAATGGGCGCACGTCCGATGGCGCGTGTCATCCAGGACAACCTGAAAAAACCGCTCGCCAACGAACTGCTGTTTGGTTCGCTGGTGGACGGCGGTCAGGTCACCGTCGCGCTGGATAAAGAGAAAAATGAGCTGACTTACGGATTCCAGAGTGCACAAAAGCACAAGGCGGAAGCAGCGCATTAATCTGATTGTCTGGTAGGTTGGTTAAGTCCGTGATCTCGTCAGGGGTTACGGACTTTTTATTTATGGGGGGAGGAGGTTCAGACCCTTTTTTTAATGATGATGCTAAGTTATTGATAATTAGTGCTGCGGGTAGGTAAGGATAAAAAAGGGTGGCAGCAGGAGATTGAGATGGTTTTGCTTTATTAACAACGGGCTAAACGTGTAGTATTTGA # Right flank : TACGATAGTGTTAGACGTTTGGTCGTGCAATGACACTCTCAACTTCAAACCATTAGCGTTAGCACGCAATAACAATCGTAATAATTGCGATGGAAATCAATTTTCAGCACATAAATCAATGCTGTACTAAGCCCAATACCTTCAAATATAAAATAATCACAGGATGTGTTTATGTCTTCGAATTACCTTACGCCTTCCGATCTCAAAACCATTCTCCACTCCAAACGCGCCAATATTTATTATCTGGAAAAATGCCGGGTACAGGTGAATGGTGGGCGGGTGGAGTATGTTACCAGCGAAGGTAAAGAGTCGTACTACTGGAATATCCCCATTGCGAATACCACGGCGTTGATGCTGGGAATGGGAACTTCCGTTACCCAGGCGGCGATGCGTGAATTTGCTCATGCCGGGGTGATGGTAGGCTTTTGTGGTACGGATGGCACGCCGCTGTATTCAGCAAATGAAGTGGATGTTGATGTCTCCTGGCTCAGCCCACAAAG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [60.0-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.51,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 46107-47336 **** Predicted by CRISPRDetect 2.4 *** >NZ_LIVA01000008.1 Escherichia coli strain 152 contig000008, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 46107 28 100.0 32 ............................ ACACCCTGATGATGGTGCCGCCCTCAATGCTA 46167 28 100.0 32 ............................ AATCGCACAGTTGCGCACGGTCAGGGTCAGGA 46227 28 100.0 32 ............................ CGAAGCGCGGCGCAGCCGCTGACGAACGTACC 46287 28 100.0 32 ............................ TGAACGCTATCATCTTCATAAGTCACCCCAAC 46347 28 100.0 32 ............................ AGCAGCCCCAATCCCTAAAAGAGCCATTCCCT 46407 28 100.0 32 ............................ TTCCATGCCCTGACGGACATTTAAAACCCGTT 46467 28 100.0 32 ............................ CAGACGGTTTCCGGTTGTGCTCAAGGCACTGC 46527 28 100.0 32 ............................ CATTCCGGACTGGCATCAATAGCAACCGGAAT 46587 28 100.0 32 ............................ GGAACCGTGGCGGCTCGGTGGTTCTAGAGATC 46647 28 100.0 33 ............................ GGTACCTTGCAGGCTCAAAAATTGCTTGATTTT 46708 28 100.0 32 ............................ TCTTGCGTCCCCTGAAATACATCAGGGGATTT 46768 28 100.0 32 ............................ TTTTGGGGATACCTGTGTAAACCTTGAATTCT 46828 28 100.0 32 ............................ TTCAGCAGCTCTCGAACACGTTCCCAACCTTT 46888 28 100.0 32 ............................ ATGCGGTTGGTAGGTGGTCGTAGACCGTCAGT 46948 28 100.0 32 ............................ GTTCCGTATACCAGTGATATGCAGAAGGAACA 47008 28 100.0 33 ............................ AGGAGCATTGGCGGAGGGAACGCGAGCGCGGGT 47069 28 100.0 32 ............................ GAATCTCGGCGCGACGGCACCCGCCACCGGGG 47129 28 100.0 32 ............................ AGTTCGCGGCAGACATACACGCCGGGAGTTTT 47189 28 100.0 32 ............................ CAGCGGGGTGATTGAATATTTTGGCATCAGAC 47249 28 100.0 32 ............................ TTTCTGCTGTTATCGCCGGGTTGCACGAGTGC 47309 27 92.9 0 .......................-C... | T [47329] ========== ====== ====== ====== ============================ ================================= ================== 21 28 99.7 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : TTTTTATGCGCGCCATGCCCACCGCATACAAAAAAAGCCCGTACTTTCGTACGAGCTCTTCTTTAAAGATGGCGGTGAGGCGGGGATTCGAACCCCGGATACGTTGCCGTATACACACTTTCCAGGCGTGCTCCTTCAGCCACTCGGACACCTCACCAAATTGTTTTGCTGCCAGACCTCATAGGTGGCAACGGGGCGCTACTATAGGGAGTTGGAGTAAAACGGTCAAGAAGAATTTATATAGATTGATTCGTTTGGTTACGCAATGAACACACTGTTGGTGGGACGGAGATTATGACTGTATGTGTTCTGGTCAATTGTTTATCAAAAGCTATGCAGAAAATATGAGATTGAAGAAATACCAAATCGTCCCTTTTTTTAGGGCGAAATGTAACTCATTGATTTTGTTTACTGCTATTTTGAAGTCTGGAAAAAGGGGGTGAATCTGCGATTTTGTAAGTTTTAACAGTAAATCAATCGGATAGTCTGCTATTATTCCA # Right flank : ACTCAACACTCCATCCTCTAATATTTATTCCCCATAACTCATAGACGCAAAAAAGGCCGGTTAAACCGACCTTTTACTCATTCTTTCTCTTCGCCCATCAGGCGGTAAAACAATCAGCGACTACGGAAGACAATGCGGCCTTTGCTCAGGTCGTACGGGGTCAGTTCAACAGTCACTTTGTCGCCCGTCAGGATGCGGATGTAGTTTTTGCGCATTTTACCGGAGATGTGTGCAGTAACCACGTGACCGTTTTCTAACTCTACGCGGAACATGGTATTAGGCAACGTTTCAAGAACGGTACCTTGCATTTCAATATTGTCTTCTTTGGCCATCTAATCCTCTGGGGTATCACTACCGTAATTTGAACCGGCAAGATAATGCCGAAGTTCTGTAAATAAGTAAAGATTTGCGCGCTAAATCGCAACAAACAGGTTCGGCACATTACTCCGAAAACACACGGCTAAGCCGCACCAAAAGCGCAACGTATAAGGGAGCGGTGA # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //