Array 1 66573-65616 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_RJOA01000013.1 Streptococcus mitis strain BCC49 D8843_contig013, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                     	Spacer_Sequence               	Insertion/Deletion
==========	======	======	======	====================================	==============================	==================
     66572	    36	 100.0	    29	....................................	GGATTTCTCGTAACAATCGTAAAGAGCGT 	
     66507	    36	 100.0	    30	....................................	ACCAACGTGTCACAACCATTCAAGGAGATT	
     66441	    36	 100.0	    29	....................................	GCATCTTAGGAACAATAATATCAAAGTTA 	
     66376	    36	 100.0	    30	....................................	GTGCCAGCAACATTGGGGGCGATTATGACT	
     66310	    36	 100.0	    30	....................................	CCTTGCTTATCCGCCGTTACATGGAGAGCA	
     66244	    36	 100.0	    30	....................................	TAAGTTTTCTAAACAGTTTGTCTCAGATAT	
     66178	    36	 100.0	    30	....................................	TATTGCCACCAGCGTATACCGTCCATGCTT	
     66112	    36	 100.0	    30	....................................	CAAACGCTCCTCTAGGAAAACCTGACTCGG	
     66046	    36	 100.0	    29	....................................	AGATAACGCTAGCGATTTCATGAATAACT 	
     65981	    36	 100.0	    30	....................................	AAACGATTTTTCCATTTAGAATTATCTTAG	
     65915	    36	 100.0	    30	....................................	AGCCTCTTGGCTTTCCATATAGCGACGGAT	
     65849	    36	  97.2	    30	...........................A........	TCACTAGAAAGACCAGTATAGCAAGGTTGC	
     65783	    36	 100.0	    30	....................................	TAATGGTTATAGAAATAAAGATAAGGAATT	
     65717	    36	 100.0	    30	....................................	TGACATCGTAGGTTTGAAAACTACTGATTC	
     65651	    36	  91.7	     0	................................T.TT	|                             	
==========	======	======	======	====================================	==============================	==================
        15	    36	  99.3	    30	GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC	                              	       

# Left flank :   GGATGATTTTTTATCCTATAATGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTGACTAATCATAGCGATTCATTATATATTGTTTTATTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCTCTAGAATTTATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTTTATCTGTAGAAGATCAAGTAGCATTAAAAATTTTGAATAATTTGTATCAGTATAAAATGAAAACAAAATTCTGTATTGAATCAATCAATCCAATGTTATTGAAATATTTGGAATAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATATTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG
# Right flank :  TAGATAATATTAGCAATTGTCTAACTTATATAAAAAACCGCTCAGCTGAGCGGTTTTCGTTTATTTTTTTCTTTTACAGTACCCACGTACGGATGGCGTGGGCAACGCCAGATTCGTCATTTGTTTTAGTGATGTATTTGGCGATTTTTTTGATTTCTGGATTTCCATTTTCCATGACAACTGGGTTACCAACGACTTCCAGCATGGCGCGGTCATTTTCTTCGTCACCAATCGCCATGGTTTCATCTTTGGTCAATCCTAGTTTTTCAGCTAAGTGAGTAATAGCTGAACCCTTGTCTACATTCTTTTTAAGGAGTTCGAGGTAGAAAGGAGCAGACTTGTTGATGGAGTAACGTTCGTAAAATTCTGCTGGGATTTTTTCAATCGCAGCATCGAGAATTTCTGGTTCATCGATGAACATACATTTGACGATTTCCTTGTTAGCCATTTCTTCAGGTGTGCGGTAGAAAATAGGCATGCTGACGAGGGTTGATTCGTGC

# Questionable array : NO	 Score: 6.22
# 	Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         NA Score: 0/4.5
# 	A,T distribution in repeat prediction:     NA [Repeat is AT rich:69.44%AT]
# 	Reference repeat match prediction:         R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-1.20,0.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [4-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [66.7-73.3]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.37,4.91   Confidence: HIGH] 

# Array family : II-A/C [Matched known repeat from this family],   
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