Array 1 77451-76201 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBI01000005.1 Streptomyces fumanus strain JCM 4477 sequence05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 77450 29 100.0 32 ............................. GACCGGAGAGCAGTACGCACCTCGTCGGGGGT 77389 29 100.0 32 ............................. CCGGGTTGGCGGCGCCGGTAGCCCGCCCCGTG 77328 29 100.0 32 ............................. GTCTGTTTCGGCCTCGGCTACGCCCTGCAACC 77267 29 100.0 32 ............................. AAGCTCGGCATCGACAACCGGTGGAACGTCAC 77206 29 100.0 32 ............................. TTGCAGGACACGTCGGTGCCGGTGCTGGCCGT 77145 29 100.0 33 ............................. GCCCGGGTCGTAGTCGCGGTGGACGAGCTGCGC 77083 29 96.6 32 ..................A.......... CCGGACCTCATTCCTGGTCACACGGACTTCGA 77022 29 100.0 32 ............................. GCCCGGGTCGCCGAGTTGGAGGCGCAGCGCGC 76961 29 100.0 32 ............................. GCGCTGATGGCCATCTTGGTGTTCTCCGTTCG 76900 29 100.0 32 ............................. ACCCGGCAGGAGATCGCCGGGGCGGTGGTGGG 76839 29 96.6 32 ..T.......................... CCGATCGCGGTGAGCATCTGCGGGCCCACGGA 76778 29 100.0 32 ............................. CGTGAGGGCCGTCCCGTCGGCCGCTTCCGGGT 76717 29 100.0 32 ............................. TCATTCTCCTTCGTGCCGGGGTGCCTCACGAG 76656 29 100.0 32 ............................. CCATCCGCCGCACCCGAGGCCACCACGCCACC 76595 29 100.0 32 ............................. CACATGACCGACCGCGCGTACCGGCGCGCGCT 76534 29 100.0 32 ............................. TTCCGCTCCACCAGGATCGCGTCGGCCTGGCG 76473 29 93.1 32 ......AT..................... AACCGCAGCTCCACGCACCGGCGATGGGTGGG 76412 29 96.6 32 .....T....................... CCCCGGGGGAACACGCAGTGAACGCACCACCC 76351 29 100.0 32 ............................. GTGGAGAGGACCGCGACGGTGCGGGCGGTGTC 76290 29 100.0 32 ............................. ATCGTGGAGTACTCGTTGAACGTGTCGGCGAG 76229 29 96.6 0 ..T.......................... | ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.0 32 GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Left flank : CCGCGCATCATCCATGACGTCCAGTGCCTCCTCGACCCGGACGGCGACCGCCAGAACCCGATCCCGAGGAGGAACTCGTCGACCTGTGGGACCCCGTGGCCGGCACCATTCCCGGCGGCACCAACCACGGCGGAGCCTCATGACAACCCTCAGTTGGAAGGCACGGCACCCATGGCCTCGATGACCGTCCTCGCCACCACAGCCGTCCCCGACCATCTCCGCGGCGCCCTCACCCGATGGCTCCTCGAAGTCACTCCCGAGCTCTACGTGGGCACCGTCTCCGCCCGCGTACGCGACGAACTCTGGGCCTCCATCACCGCCTGCGTCCGCAACGGCACCGCCGTCCTCGCCTACCCCAGCGACAACGAGCAGGGATTCGAACTCCGCACAGCCGGAGAACAGCGTCGCAGCCCGCTCGACTTCGACGGCCTCACTCTCGTCGCGTTCCGGGAAGAAGGTCAACAAACAGCAAAGCCCTTCTAACTCTGCAGGTCGCAAAG # Right flank : GTGGCCAGCAAGTGCTTCCACTGCTTCTGGCCGTTACCCGAGCTGTGCCGCGAACTGCACGGCGAGGCGACGCCACGGCGATGTGTCGCATACCGGTTGCTGGCGTCACGGCGGCCGGTACGGGCGCACCGTCCCGTCGGTCAGCTCTCCGCTGCGGCCTCGATGGCGAGTTCCTGCTTGTTGCGGCCCTGCCGACGAGCGTCGAGCCGCGTTCCCGGCCCCAAGGAACGTGAGGCCGGGTTGGTCGCTCGCACTGCTTGCGGCGGTACAGCAGAGAACTCACGCCTTTCACCCATCCGCTGAGCACCGGGCTTCTGCCCTGCCCTCGGCAGTCACTCAACGTGCCCCAGGCAGCGCCTCCGGCGGCATGACGTCCCGTGCCCTAGGGTCGCCACAACGTCGCGATCTGGAGAGAATCTGGGGAGTATCAACGGCCGCGGGGAGATCATGGGGAGAATCGACGGCGTAACGCGGCACGATTCCGAATCACGCTGAAAGAC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTCTCCGCGCGAGCGGAGGTGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCTCTCCGCGCGAGCGGAGGTGAGCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-10.10,-11.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 95329-94384 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBI01000005.1 Streptomyces fumanus strain JCM 4477 sequence05, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 95328 29 100.0 32 ............................. CCCTCGTCCGCGTCGTCCCTGCTGGCCCTCAT 95267 29 100.0 32 ............................. CGTTCCCCGGCACGCCTTCGTACCGCGCTGGT 95206 29 100.0 32 ............................. CCGGGCCCGCGCCGGGAGCCGGCCCTCGTTCA 95145 29 96.6 32 ..........................A.. CTCAAGGGCGGCGCCCCCAACCTGATCATGGT 95084 29 100.0 32 ............................. AGGGCGTTGACCTCGTGGAACACCGGTGCGGC 95023 29 100.0 32 ............................. AACCGGTCGCTGACGGACATGCGGACCCTGCT 94962 29 93.1 32 ..................C.......T.. GAGAAGCTGTTCGCCGACTGCCGCTCCGGACG 94901 29 100.0 32 ............................. CCCTCGTCCGCGTCGTCCCTGCTGGCCCTCAT 94840 29 100.0 32 ............................. CAGTCGTACTACGCCGGGTCCAGCCTGATCTG 94779 29 100.0 33 ............................. GGCTGGACAGTGGGTGATCTCCGGGCCCGGCTG 94717 29 100.0 32 ............................. CAGGCCGCATTCTCCATCGGCTACCGCGTCCC 94656 29 96.6 32 .....................A....... CCGGTGGTGGCCTGGTTGGTGACTCCGACGCC 94595 29 96.6 32 ............................C GCGACCGGGCCCCCGCGTAGTGTGCGCGGGGG 94534 29 100.0 32 ............................. CACGACAACTGGGCCCGCCTGGGACTTGAGCA 94473 29 100.0 32 ............................. CAGGTCACGGCGGCCGGCGTCGCCGAGTGGGC 94412 29 89.7 0 ...T.....A.......C........... | ========== ====== ====== ====== ============================= ================================= ================== 16 29 98.3 32 GTCCGTCCCGCCGACGCGGGGGTGTTCCG # Left flank : GGCGAACGGACCACCCCCGCGTCGGCGGGAAGGACGACGGCAATCTCCGTGGCGGTGCGGATTTCGGCGGACCACCCCCGCGTCGGCGGGAAGGACGGGGAGAGACCGGACCGAGGAAGGCGAGGAGGTCGACCGGACCACCCCCGCGTCGGCGGGAAGGACGGCCCCAACGTGATGACGGTGGCCGGCAACAGCGGACCACCCCCGCGTCGGCGGGAAGGACCACGCCAGGCACCGAAGCTGCCGATCACACTGCGGACCACCCCCGCGTCGGCGGGAAGGACGCTATCCCGCTCTGGTACCAGCCGCTGATCGACGGACCATCCCCGCGTCGGCGGGAAGGACGCTACGGAAGGCCCGGGCGGTGGAGTGCCAGACGGACCACCCCCGCGTCGGCGGGAAGGACTCCGCGAGGACCGCGACGACGTGGGCCACTTCCGGAACACCCCCGCGTCGGCGGGAAGGACGGGGCAGTGGCTGTTCGTCGACCGCGACGGCCG # Right flank : AGCATCGCCCGCGTCGTCTACGCCCTCGTCCTGTCCGTCCCACCGACGGGGGTTCCGGCAGTCGACCCGGCGTTCGGCGCTCGTTGCCGTCGAATGCGCGGTCTGCCAGAAGGAGCATGTCCGGGGTGAGGTGGCCGGTCAGTTCCCGGGCGTAGTCGCTCTCGGCTTTGACGGCGGGGCCGAAGGTTGCTGCGATCAGGCCGCGGGTGCCTGTCTCGCACAGCGTCATCAGTATCAGCCGGGGGTAACCCGCCGGGCCATGGCGTCGTACCGTCCGGCCGAGCCAGGACCTGTTGCGCTCGTGGTCGGGGACCGACAGGCTTCCGCATCCGTCGAATGCGACCGTGCGCCAACGGCGGTAGCGCACTCCAGGGGTGGAGGGCTGGGCCAGCGGGCCCGCCAGCACGTCGAAGAGCCGCTGCAGAGGGGCGATGCCCACCCGCCCGGCGCAGATCACGAAGTGCCTTCTCGGACGGCCGTGGCACGTTGCCGCTCAGCCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCGTCCCGCCGACGCGGGGGTGTTCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCCGCCCCGCCGACGCGGGGGTGCTCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-10.70,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [28.3-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 95362-96741 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBI01000005.1 Streptomyces fumanus strain JCM 4477 sequence05, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================= ================== 95362 33 90.9 28 ........................T.....AA. TGGCCCACGTCGTCGCGGTCCTCGCGGA 95423 33 93.9 28 .............................T.T. GCACTCCACCGCCCGGGCCTTCCGTAGC 95484 33 87.9 28 .....................A.......T.GA TCAGCGGCTGGTACCAGAGCGGGATAGC 95545 32 93.9 29 .............................-.A. TGTGATCGGCAGCTTCGGTGCCTGGCGTG 95606 33 93.9 26 ..............................TT. CCGGCCACCGTCATCACGTTGGGGCC CT [95635] 95667 33 97.0 33 ..............................T.. ACCTCCTCGCCTTCCTCGGTCCGGTCTCTCCCC 95733 33 90.9 28 .............................C.GA AATCCGCACCGCCACGGAGATTGCCGTC 95794 33 93.9 28 .............................TT.. CCGACTTCCCCGCGATCCTCATGCCTGC 95855 33 90.9 28 .............................CAG. TGGCTGGCGGGGCGGCTATGGCGGCGGG 95916 33 100.0 28 ................................. CCGGGGATTCCTCGTCGACGTCGGCGTC 95977 33 93.9 27 ..............................T.C TTGAACCCGCCGCCCGCAGCGTCCCCG C [96006] 96038 33 90.9 28 .........A.....................GC CGTCAGGCAGCGCCAGCGGTCAGCGGGT 96099 33 93.9 28 ..............................T.T CCTCGTCAGTCTTCGGATTGGTCGGGAG 96160 33 93.9 28 ...............................AC TGACCGTCCGCCAGCCCTATGCGGGGGC 96221 33 93.9 28 ..............................TA. TCATGCTCACACTCGACCGCGCCTGTCA 96282 33 84.8 28 T...........................TCG.T CCTGCCTGGCCGCGACCGCGCGTACGTC 96343 33 93.9 28 ...............................GC CTACGCGCGCAACGTGGTGCTGCCCAAG 96404 33 93.9 28 .............................CA.. TCACCGTCAGCCACGGCGGCGGCCTCGC 96465 33 90.9 28 ..............................AGA ACGACCACGGCTGCGACGCGGGCCGGTA 96526 33 90.9 28 .............................A.GA CACCGATCAGCGTCAGGATCGATCCGAC 96587 33 87.9 28 .......................C......AGA CCGGGGCCAAGGTGACCGCCCAGGTCCT 96648 33 93.9 28 .............................C.T. GCGGGAGATCCGCCGCGAGCGCCCCGAC 96709 33 87.9 0 ..............T..............AT.A | ========== ====== ====== ====== ================================= ================================= ================== 23 33 92.3 28 GTCCTTCCCGCCGACGCGGGGGTGGTCCGGCCG # Left flank : GCGGACGAGGGCGGAACACCCCCGCGTCGGCGGGACGGACCGTCCGGAGCGGCAGTCGGCGAACAGCTTCTCCGAAACACCCGCGCGTCGGCGGGACGGACAGCAGGGTCCGCATGTCCGTCAGCGACCGGTTCGGAACACCCCCGCGTCGGCGGGACGGACGCCGCACCGGTGTTCCACGAGGTCAACGCCCTCGGAACACCCCCGCGTCGGCGGGACGGACACCATGATCAGGTTGGGGGCGCCGCCCTTGAGCGTAACACCCCCGCGTCGGCGGGACGGACTGAACGAGGGCCGGCTCCCGGCGCGGGCCCGGCGGAACACCCCCGCGTCGGCGGGACGGACACCAGCGCGGTACGAAGGCGTGCCGGGGAACGCGGAACACCCCCGCGTCGGCGGGACGGACATGAGGGCCAGCAGGGACGACGCGGACGAGGGCGGAACACCCCCGCGTCGGCGGGACGGACCGGCCGTCGCGGTCGACGAACAGCCACTGCCCC # Right flank : ACGCGCGACGGAACTGGCCGTTACCAGATAGCCGCGGCGTCACCGCTGTCGGCCGGCCGGGCGCGGGGTGGTGGCGGGAGGAAGGCCGGGCAGGGTGGGCTTGTGCTGGGTGTGAGTGGGGTGTGCCGTGGGTGTCGTGCGGGTGCCGGTGGCGTGGGCGAGGTCTTCGGTCAGGGCGGTCAGGAGCGGGGCGGGGGTGTGGGGGGAGGCGTGGATGGCCCAGGTGGGGCGGTCGATGCTGGGGCCGGCGCAGAGGGTCCAGGCGGCGGAGGTGCTGCGGGGGTAGTTGGCGGCGAAGGCGTCGAACTGGACGCCGGCGTCGTTCTGCGCGGTTTCCCAGCGGAGGTAGCGTCCGTCGGCTGTGTGCTTCCAGCCGACTTCGGCGAGGGGGCGGGTAGCCGTGAGGATGGTCTTCTCGGTGACCGGGCTGCCCACAGCGGTCTCCCAGGCGTCGCCGTGGGCGAGGCTGATCAGGATGGTCTGCAGCAGAGGTCCGGGTG # Questionable array : NO Score: 3.45 # Score Detail : 1:0, 2:3, 3:0, 4:0.61, 5:-1.5, 6:0.25, 7:-0.00, 8:1, 9:0.09, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCCTTCCCGCCGACGCGGGGGTGGTCCGGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCCTCCCCGCCGACGCGGGGGTGTTCCGTGCT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.50,-10.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [23.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.74 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 151014-150799 **** Predicted by CRISPRDetect 2.4 *** >NZ_BNBI01000008.1 Streptomyces fumanus strain JCM 4477 sequence08, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 151013 29 83.3 32 .G.....T...-.T...............C GAGACGATCCATCTTGGGGTTTGCCCGAATTT T,A [150998,151010] 150950 30 93.3 31 ...T.........................C GGACCCCCGGCTGCTCGGCTGCGTCCAGCGC 150889 30 96.7 31 A............................. GCGGCACCCAGTTCGCCGGCGTGACGTGGCC 150828 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ================================ ================== 4 30 93.3 32 GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Left flank : CCCTCAGGGGGCACGCCCATCGACCACTGAAGCGGATCGGAACAGCCGGGACGTGCCGCGCACGAGTCCGTGCGGGTGACGTCCCGGGAGCGGCTAGGAGACTCCTCCGGCACGCGCTCCGTCGTCACCCCAGATCCGCCCCTGGGCGCCCGACGCATTCCTCACCTGCCGCCTCCCTTGACACGCAGAGAGCAGGTTCCACTTTCCGAAGACCGCTCTAGGTTTGCTTCCTTCGCCGAGTCAATCCAGTCCGTACAGGACCCAATGTGTCTGCTGTCGGCGAATCGACATGAACCCACACATACCTGTACCTCGGTGGCCGGGAAAGACGAGGACAGAGCAGGCGCCTTCTAAACGCCTACTCCCCGTGGCCAGCACCACATGGCTCCGATGCCACCATCTCAACGGTTCCGAGCTGACGGCCTGCAACAGTCGGACCATGGTGGGTACGGTGGCCTATGTACACGCTGACCCCGACGAAGTCGACCAAGCTGCACGTG # Right flank : TCTTCGACACCACCCGCCGTCCTGACACTCGACGTTTCCACTCCTTGTCGCAAGTCAGGAGCGAGGTCAGGCATGTACCACCAGCAGACCAAGAACCTACTGGCACTCTGCGCAGGTGGCTGAGTGGGATCGCTCAGCACCACGGGATTCCCGGCGCCTTGCCGCACCCCGCAGTCAGGAGGCCGCCTGATCAGCGGGGCAATGCGCCTGACGGCCCATCGTAACGAGCGTCAAATGAGCGTCACCATGCCTCTGAAAGCGTCATCGCAGCGTCAAGATATCGCCGTAACGCCCACAATGCACATAGCGCACACCACCCAAACCCGCAGGTCAGGCGCCCTTTGTGACCGGCTCAAGGATCGCCACGCACTCCACATGATGCGTCATCGGAAACAGATCGAACGCCCGCAGCGTCCGCACCCGGTACCCGCCCTCCTGGAAGTACCCCAGGTCCCGGGCGAGGGCCGCCGGGTCGCAGGCGACGTAGGCGATGCGGCGGG # Questionable array : NO Score: 5.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.66, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCACGCGGGGGTGGTCCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCACGCGGGGGTGGTCCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.00,-9.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [41.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //