Array 1 320224-321105 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066172.1 Streptococcus oralis strain SF100 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== =============================== ================== 320224 35 100.0 30 ................................... AATGATCTTGGCTGTTGCAGCTCCAACATT 320289 35 100.0 30 ................................... TAGGTTGGTAACTATATATTATCAAATATA 320354 35 100.0 30 ................................... TTTTAAACGAACTTCTGTAATAGCAGATAA 320419 35 100.0 30 ................................... AGTCTGTCTGCTCATGCTCTTGAATTTAAG 320484 35 100.0 31 ................................... CTCAATTCAGCAAGAGTTTCCACTTCTTCGT 320550 35 100.0 30 ................................... TACCTGCGCAACCTCCGGCGAAGTATAAAT 320615 35 100.0 31 ................................... CTCAATTCAGCAAGAGTTTCCACTTCTTCGT 320681 35 100.0 30 ................................... CTGATTTTTGTTTTCCACGCAACTCACCCA 320746 35 100.0 30 ................................... ATTCGTAATAGTAAGTATTTACGAATATTT 320811 35 100.0 30 ................................... AATCACGGTCAATAAACCATTGTTTTACAG 320876 35 97.1 30 ............................T...... AATCATTCTCAGTACCTCGAAGCGCATTGA 320941 35 100.0 30 ................................... CAGCACCTTTAACGAGTACCATTGATTGAG 321006 35 100.0 30 ................................... CGATAGCCGCCCGCAAGCGTTTTGAAAAAT 321071 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== =============================== ================== 14 35 99.8 30 GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Left flank : ACCTTAACGAACACATCAAACAACACAAAAAAGACCACGCTACTTACCGTGGATTGATGAAGAAAATCGGTCGCCGTCGTAACTTGCTTGCATACTTGCGTAAAAACGACGTTAACCGTTACCGTGAGTTGATCAACTCTCTAGGACTTCGTCGCTAATCTGCTTTATTTTCCACTTACATTGCGTTGTCACCTTACCTCGATATACTCAAGTATAATCTTCGGTTACGGTTCCTAGCACTGTAAGGTAAAATAAACCAGATCATCTCCCTTCGGGGAGATTTTTTGTTTCACTAACATTTTTGTACAATCTTCGGCTTGCCGCTTAGTCTATAAACGTTTTATCCAGCAAGAATCATGATGCTAAGGGCGTTAAAAATCAGTATGAAAATAGGGAAAGGACACAGTGTTCGATGAACACAAGGAGTTTTATCTTTTTCACTAGGATTTTAGCCCAAGCTCAAATCAGCTCTCTGATATTCAGAGGGCTTTTTTATTGAG # Right flank : CCTCAAATGGTATCAGCTAATGACACCATGAAGGTGCGCAGTTACTCGGCTTTTCAAGCCGAGTAACTGTCTGCAAGCCCCCTCGGAGAGCCCACACTTTACGAAGTAAAGTATAGTATGTTATACTTTACATGGAAGTAGTCACCGAATTCCAGTTAGAAATTACTTTGTAACTACGTTTTGAGGAGGAGTAAAATGCTTTCCTACGTTCGACATTACCCACTAGCGATAGCTAAATTAATGTGTCTGTGCTCTCCTAAAATCTGCTGATTTATTACTAACTAATACAGGAGGTTTTTATGGGACAGACAATCATATCTGCTATTGGTGTTTATATTTCCACCAGTATCGATTATTTAATTATTTTAATTATTTTATTTGCACAGCTATCACAGAATAAACAGAAATGGCATATTTATGCGGGGCAATATCTAGGAACAGGCTTACTTGTAGGGGCGAGTTTAGTTGCTGCTTATGTCGTTAATTTCGTGCCTGAAGAA # Questionable array : NO Score: 3.25 # Score Detail : 1:0, 2:0, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTATCGGTCACAATTTTGGAGACTACAAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.71%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.20,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-51.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 982182-978784 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP066172.1 Streptococcus oralis strain SF100 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 982181 36 100.0 30 .................................... AATTCAAAGGGAAGATTGACTGTCTCAATG 982115 36 100.0 30 .................................... TATATCCGGTGTCATACCAGCGCCCTTAAC 982049 36 100.0 30 .................................... ATATATGAGACCAAAACGATACCCGTATAG 981983 36 100.0 30 .................................... GTTAACGAAACTTTTATGGTATTATCATTA 981917 36 100.0 30 .................................... AGATAATGAACTTCCACTCTTCTTCAGTAT 981851 36 100.0 30 .................................... GTCTATGAGTAGCTTTGTTCGTGAGCAAGT 981785 36 100.0 30 .................................... CGTGAAGATCTCGACAAGCTTGTATATTTG 981719 36 100.0 30 .................................... ATGATGAAATGATGCCTGGAGTCCAGGTCG 981653 36 100.0 30 .................................... GATTTAGTAGGGTTCGATCAATGAACTATG 981587 36 100.0 30 .................................... GTAGTGAATCGATAATGACATCTAGGACAT 981521 36 100.0 30 .................................... ATGACGAAACGATACATGGAGTCCAGGTTG 981455 36 100.0 30 .................................... AATTGCAAAACGCAAACAGACGCTTGAAGC 981389 36 100.0 30 .................................... GTTCCATTTGAGCTACAACATAGCCGAGCA 981323 36 100.0 30 .................................... TTTTTCTAAGGTTACAGGTTACATCACTTT 981257 36 100.0 30 .................................... TTGCTAAATTCATGGAAGCCTTGCGTTCTA 981191 36 100.0 30 .................................... GAAGTGTGGTTCTCCGTCCTCTTTCCGAAA 981125 36 100.0 30 .................................... AAATCCAAACACAATTACTTAATTTGTCAG 981059 36 100.0 30 .................................... CAGTGTCATCCACAGAGTATGACCGAATAA 980993 36 100.0 30 .................................... TGAAATATCGAGAAACCTGGTACTTCATGG 980927 36 100.0 30 .................................... TGGCTATTGAGAAAGTTTTGAATGTTACGC 980861 36 100.0 30 .................................... AGCCCTTCAGCAACTCCCCATTCTCCGTCA 980795 36 100.0 30 .................................... TAAAGGGTGTCGATAATTCCCTGAAGGCGA 980729 36 100.0 30 .................................... TGTTTTCAGCTGAAGAAGACACCGCACTAT 980663 36 100.0 30 .................................... AAGAAAAAAGAAGGGCGCTGTTTTTTAGAA 980597 36 100.0 30 .................................... AGTTCCCCCCTCATTCAGCTTTCCAGACCG 980531 36 100.0 30 .................................... CTTGTTTGCTGCTGACCAAACGGGCGGTGT 980465 36 100.0 29 .................................... CTTACCGAAGTTTATGGAGCAGACTAGCA 980400 36 100.0 30 .................................... ATCACCCCTTTCATGGTGTAAAATAGGGTA 980334 36 100.0 30 .................................... TGATTATTGATAAAACAGAACAGCTCTATC 980268 36 100.0 30 .................................... AATGCAAATAGTCAAAATCCTTTGCCTGAG 980202 36 100.0 30 .................................... AGGTGATCTAACAATCAACAAATGCGTTCA 980136 36 100.0 30 .................................... TTGGCTCTACTGTTATTAAGGCGCTTTCTT 980070 36 100.0 30 .................................... TGGGTGGATGTGACTTACACTGTGCCGATT 980004 36 100.0 29 .................................... CCTAAGCATCGTTCTCCGACTTACAATCT 979939 36 100.0 30 .................................... TAACCCCATACCTGTATTACCATCGAATGT 979873 36 100.0 30 .................................... TCTTTTAGACCAAACTTAAATAAGGAATTA 979807 36 100.0 30 .................................... ACATCGAAGTATTCTATCATACGTTGAACA 979741 36 100.0 30 .................................... TAACCCCATACCTGTATTACCATCGAATGT 979675 36 100.0 30 .................................... TCTTTTAGACCAAACTTAAATAAGGAATTA 979609 36 100.0 30 .................................... ACATCGAAGTATTCTATCATACGTTGAACA 979543 36 100.0 30 .................................... CATGCTTTCTTTCCTCGTGTCAATGCTCAA 979477 36 100.0 30 .................................... CTATAAAAAGGTATAAAATCATGACAAAGA 979411 36 100.0 30 .................................... CGGATTCACTGTTTATCTTGGTAAAAAGAA 979345 36 100.0 30 .................................... TGGAGTCCCTTGGACTACTGTTTCTGACCT 979279 36 100.0 30 .................................... AAGGCGCTAGACAGCTCCCTTAAAAACAAT 979213 36 100.0 30 .................................... TCTTCGATTAAGTCGATTCTGTAAGCTTGC 979147 36 100.0 30 .................................... ATACAAGGATGGCCGAATTGTTCAAATTAG 979081 36 100.0 29 .................................... CAAGACCACTTTCTCAAATGCCAAAGCGC 979016 36 100.0 30 .................................... TGTTGGATGGGAATGCTACTCCGACACTGG 978950 36 100.0 29 .................................... CAAGCCACGCAGGGTTTACATCATAGGTT 978885 36 100.0 30 .................................... CTTTTCCTGTTATCACAGTCAAAAACAACG 978819 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 52 36 100.0 30 GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Left flank : GGATGATTTTCTATCCTATAGTGATTTTGTTGAATGTTGCGAGAAAATGGAGTTTCTGACTAATCATAATGATTCATTATATATTGTTTTGTTTCCTTCCAATGAAGGTTATCTTCATGTCACGAAAGAAGTTTTAGAGGAAATCAATATTGTTTCCGATTATGTTGATCATTTTTATTCGCTAGAATTCATGTATGATCGCTTTACCAATCAGTATCCAATAAATCAAATACCTGATGAACAAGAATTTTTAACTTCTTTAAGAAAAATTGGATCCTATTTATTTAGCTCGGACATTCTCCACATGAGTCTATCTGTAGAAGATCAAGTGGCATTAAAAATTTTGAATAATTTGTATCAATATGAAATGAAAAAAAAATTCTGTATTGGATCAATCAATCCTATGTTATTGAAATATTTGGAAGAATAGTATTGACGAGTGAGATTTAAGGCTTTATAATGTTTTTGAGGGAACAAAAATCAAAATTGACGAATTTGAG # Right flank : AGTCAAGCGATTTTCAACTTGTTCCTTATTTCTCTCTGTCTGCAGGGGGCAGTAATTCAATCAAAAAGCACTGAATGATCAGTGTTTTTTTGTCTTAAAATAGAAACCATTTCAGATGAAAATGGAGGTGTGGTATAATAGGAGAAAGTATAAGTGCTTATTTGAAGGGGAATTTCTCTCCTTATTATGAGTATTAGGATTTAGTTTTCTGAGAAAAATAATGATGTTTGAGCAAAGAAGGAAATGGAATGACAATTTCTGGGACAAGTGGTAACGTTACTTTTGACTATGAAAATGGCTATGTTCTAAAAGCAGAGGGAGAGTTGTTGACTGTTGGTAGCTTTATTGTATATAGGTCAAGCATACAGAATTGGGAGCCACCTTACAATCACATTCCTATCACACAGAACGAGATAGATAAACTTGTCGAGGAAGTGAACTCCATGATGACGGAGCAAACAATCCAGATCGAATTTATCTGAGTTAGAGTAGGAGAAGGA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:69.44%AT] # Reference repeat match prediction: R [matched GTTTTTGTACTCTCAAGATTTAAGTAACTGTACAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-1.20,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-71.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.77 Confidence: HIGH] # Array family : II-A/C [Matched known repeat from this family], //