Array 1 929728-930619 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRUE01000002.1 Lautropia dentalis strain KCOM 2505 KCOM2505_2, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 929728 36 100.0 29 .................................... AGGCTGGCGGGCTTCGCTGTACCGAAGAA 929793 36 100.0 30 .................................... GATCTCATCCACAACAAAAATGCCCACGCG 929859 36 100.0 30 .................................... AAGGACTGATATGACGGAACTGACAAACGA 929925 36 100.0 30 .................................... GGGCGTCTATGACGCCGGCCGAACGCATGG 929991 36 100.0 30 .................................... AGCGTTTCGGTGTCGCGCCATGTCGCGCCA 930057 36 100.0 30 .................................... TCGCCGGCCTTGCCGTCCACAGCGTCATCT 930123 36 100.0 30 .................................... CGCGCAATGGCGCACCAGCACCAGCAGAAA 930189 36 100.0 30 .................................... TACTGCGGGCCGCTGTAGGACTCCACAGAC 930255 36 100.0 30 .................................... GGTGGTGTTCGACACGCAACGACGCCTGAT 930321 36 100.0 30 .................................... ATCAGCGGCGTGCGCGCGCGCGTCGTGCGT 930387 36 100.0 30 .................................... GAACATGCCCACCCCGTATGAGACGCCAGC 930453 36 100.0 30 .................................... TTGTTCTTGTCCATCCGGCAGACAGGGTTG 930519 36 100.0 30 .................................... GTGTACTCGATCACAGTAAACCGGGAAATC 930585 35 94.4 0 .............................-..T... | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 99.6 30 ATTCTAGAACACTGGGAGATGTGTTCGGTCCGGAAC # Left flank : GGCCGAACGGAAGGCCGCTACCGAGTTTCGCAACCGCCTGTTGGACATGGGCTTCGAGATGAGCCAGTTCAGCGTGTACCTTCGCTTCTGTAGTAGTCCAACGCAGGTGGAAACCTACTGCAAGCGGGTGGAAGCCGTTCTGCCTCCAGGAGGCAAGGTCAGCATCCTGCAACTGACCGACAAACAGTATGAGCGCATCCTGACGTTCCATCGCGGGGCTATCCAGGAATCCGGAAAGGCGCCGGACCAGTTCACATTGTTTTAAGAATTTGTTGGCTAGAATCGTATGTTTTCGGCAACAAATCGGTCGTTGCGTGGGAGTTCGGGAGCATGGGCAACCATCAATTTGATCGTATATTTTGCAGTGTTTTACGTTGTGGTCGCCTTGTGCGGACAACAAAAACGGGCCTTGCGGCCCGTTCCTGTGTATTGATTCTGATGAAAAATTTACTGCCAAACTCCGTAAAACACCTTGAGAATCAATGGGTTGCTGGAGACCG # Right flank : CTGATCCATTATGCACATTCTGTTCATCTGACTTGCGTAGCGTCATAGTTGCCTCCTTTGCAACCCGATCAGGATGGAGGCATTCATGACGAACAAGGTGGACTGGGCCGCGCACCTGCAGGCCATCGAGACCGAGGGCATCAGCATCAAGGACTACGCCGCACGGGAGGGGCTGTCCGTGGCATCGCTGTACTACCACCGTCGGCGGGTCTCGGACGAAGGCAGGCGTACGGAAGGGGCTTCGGCCCTGGTTGCCGTCCAGCTGGCCGAGCGGCACGCCATCCAGCCCTGCACTGTGTGGCTTGCGCCGGGTGTGCGCATGGAGCTTGCCTCGCTGCCTTCGCCGCAGTGGCTGGGACAGCTGGTGGCCAGCATGAGCGCACAGGTGCACTGATGCATCCGGGCTGCCATATCGACAACGTCTACCTGTGCCGGGAACCGGTGGACTTCAGAAAGTCCATCGGTGGGCTCTCGGCGCTGGTGGAGCAGCAGCTGCAGAT # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGAACACTGGGAGATGTGTTCGGTCCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.80,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 2 934234-933341 **** Predicted by CRISPRDetect 2.4 *** >NZ_RRUE01000002.1 Lautropia dentalis strain KCOM 2505 KCOM2505_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 934233 36 100.0 30 .................................... TTTGCACGGTTTCTGTCGCCACGACGGAAA 934167 36 100.0 30 .................................... GACCCACGGGTCCACCACATACACGCGGGG 934101 36 100.0 30 .................................... GAATGCTCATTTTCGCTGCTGGCAGTGGAC 934035 36 97.2 29 .................................G.. CCATGGCCCGGTAATGGATCTTCCGGACA 933970 36 100.0 30 .................................... CCGCTGCCCGTGCCGCCGCCTGTAATTCCG 933904 36 100.0 30 .................................... CACCAGAAGCAGTCCCACTTCTACCGGAAG 933838 36 100.0 30 .................................... TGCCCAGCGCAAATGCAGTAATCTGCTGAT 933772 36 100.0 30 .................................... CAACGGGACACGCTGGCTGAGGCCGTCAAC 933706 36 100.0 30 .................................... GCCGCCGCCTCAATTGCTGCATCGTCACTC 933640 36 100.0 30 .................................... AATTAGCACTGTGCGGGCAGGCGTACCACA 933574 36 97.2 30 ..................................G. AAACGCTACCTACAGACAGAGGCCATGGCG 933508 36 100.0 30 .................................... ATCATGAACAAGCAAGAAACCGCCCTGGTC 933442 36 100.0 30 .................................... GCAGGGCGATACGCTTCATCGATGGTGATT 933376 36 77.8 0 .........................GTAAA..ATC. | ========== ====== ====== ====== ==================================== ============================== ================== 14 36 98.0 30 ATTCTAGAACACTGGGAGATGTGTTCGGTCCGGAAC # Left flank : GCGCGGCAGAGCCGCAGCAAGGCGGTGCTGGCCGAACTGCGCGACTGGCTGGACAAAATGCTGCCGCTTGTACCGCCCAAAACCCCATTGGGTCAGGCACTGGGCTACCTGTACCGGTACTGGTCGCGCCTGGTGCGATACGTCGAGCGGGGAGATCTGCCGATAGACAACAATCGGGTGGAGAATGCGATTCGCCCGTTCGTTGTGGGCCGCAAGAACTGGCTGTTCAGTGACACACCGGCGGGTGCGCATGCCAGTGCAGTGGTGTACTCGCTGATCGAGACGGCAAAGGCCAACGGGCGGGAGCCGTATGCGTGGCTGCGTCATGTGCTGCAGCGGCTGCCGTATGCGAAGACGGCAGATGACTACGAGGCGCTGCTGCCGTGGAACCTGTCGGCGCTGGAGCTGGTGGAGGAAGCGATCCGGGCCTGATCAATGGTTTTGTGGATCGTTTACGTTCGGTCCGGAACCCCTGACCGTGGACGGCCGCGGCTATGCCG # Right flank : ACAAAACCATTGATCAGGCCCGGATCGCTTCCTCCACCAGCTCCAGCGCCGACAGGTTCCACGGCAGCAGCGCCTCGTAGTCATCTGCCGTCTTCGCATACGGCAGCCGCTGCAGCACATGACGCAGCCACGCATACGGCTCCCGCCCGTTGGCCTTTGCCGTCTCGATCAGCGAGTACACCACTGCACTGGCATGCGCACCCGCCGGTGTGTCACTGAACAGCCAGTTCTTGCGGCCCACAACGAACGGGCGAATCGCATTCTCCACCCGATTGTTGTCTATCGGCAGATCTCCCCGCTCGACGTATCGCACCAGGCGCGACCAGTACCGGTACAGGTAGCCCAGTGCCTGACCCAATGGGGTTTTGGGCGGTACAAGCGGCAGCATTTTGTCCAGCCAGTCGCGCAGTTCGGCCAGCACCGCCTTGCTGCGGCTCTGCCGCGCCTCGAGGCGTGCCTCGTCCGTGGCATCGGCGAACTCGCGCTCGATCCCATAGAGC # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTCTAGAACACTGGGAGATGTGTTCGGTCCGGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.20,-7.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [40.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.78 Confidence: HIGH] # Array family : NA //