Array 1 227889-229139 **** Predicted by CRISPRDetect 2.4 *** >NZ_MYWF01000003.1 Salmonella enterica strain BCW_6269 NODE_3_length_337168_cov_1.60035, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 227889 29 100.0 32 ............................. TTGGCAGCGTTAACAATCCAACCCCTGAGAAC 227950 29 100.0 32 ............................. GCAACACAGGGTTTAACCGGTTCCCTGGCGCT 228011 29 100.0 32 ............................. GATGCTAACCACTATTTCATCCGCCTCGACGA 228072 29 100.0 32 ............................. GTGCGCAGGATATTCTCGCGGACTGCGTAGCG 228133 29 100.0 32 ............................. CCTGTGACCTGTTCGATGAAGTTGTCGCGCAG 228194 29 100.0 32 ............................. CAGGCCGCGCAGTGGAAAATGAGCCCGTTTGC 228255 29 100.0 32 ............................. ATTGATCCAATTAACGTAGCTGCAATGTTTGT 228316 29 100.0 32 ............................. GCCGCGCATGACATCGAAAAAATGTGGGAAAA 228377 29 100.0 32 ............................. GCGTCCGTGTGATCACCGGGTGGGTGATGAAC 228438 29 100.0 32 ............................. TTCAGCGAGCCATAAAACCGCAGTTTGTTTGC 228499 29 100.0 32 ............................. TCACTTCAATAAGTCCTGGCGGTAGCTCGGGG 228560 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 228621 29 100.0 32 ............................. CCCAGTCAGGGGCGCGATATTGCCGCCGTGTT 228682 29 100.0 33 ............................. GCCTCAAGGTCATGCAGGTGAATGTCCCCAGAC 228744 29 100.0 32 ............................. ATTCTGGCTGTTATCGGCGGCACTCCTGATCA 228805 29 100.0 32 ............................. TGAGCACTGTTATTCGTTATAGCGGGTTTCGG 228866 29 100.0 32 ............................. TTACTGAAACGGATAAAAAATAATCAGGGGGG 228927 29 100.0 32 ............................. GGTGAGCTGGCGTCATTGCCCGCCCCGGCGAT 228988 29 100.0 32 ............................. CGCAACTATCCATGCAAATATTTCCATTGCTA 229049 29 100.0 32 ............................. GCAGCACTGGCTGGAGTGGCTGGCGAAAAATC 229110 29 96.6 0 ............T................ | A [229137] ========== ====== ====== ====== ============================= ================================= ================== 21 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTACTCGCTGCCGGTGAAATTAAACCACCTCAGCCTGCGCCGGATATGCTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTTGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCTTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTTAGATTAGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATTTTACCGTTGGTAGTTTGTTAGGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCAGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //