Array 1 2666-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKI01000098.1 Pseudoflavonifractor sp. 60 Scaffold24_1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2665 33 100.0 33 ................................. GAGCACGAGAAAGCCCTGATGATTGTGGGCGAT 2599 33 100.0 34 ................................. TCAAATTCTCCTTTTTTCTCACAATCCGGGCAGA C [2595] 2531 33 100.0 34 ................................. TGGGCCATGGGCCGCCGGGATGAGGTACAGGAGT 2464 33 100.0 34 ................................. ATTATTTGCTCCCCTCTATCTCCTGGTATCAATA 2397 33 100.0 36 ................................. CTTCTCCTCCACGTTGTAAACGTTGCTGCACAGGCA 2328 33 100.0 35 ................................. ACTGTAGTATGTCATTGTCATCAGGACCTGATGGT 2260 33 100.0 33 ................................. GACAAAGACAACCTGGACACGATCCAGTATTGT 2194 33 100.0 33 ................................. ATCTTCCGTGCCCCCGTTCAGCACCGTTTCCGC 2128 33 100.0 35 ................................. CTGGGCCTTTTGCTCGATATGGGCAATATACCGCT 2060 33 100.0 35 ................................. AGACAGGAATGCGGCCACGGAATTGATGGCGGCCC 1992 33 100.0 36 ................................. ACCAACAGCTGGCTGGCGGAGCCGTGGGAGGACACC 1923 33 100.0 35 ................................. ACCCTGGAGCGCCGGGCGGCCTCCCGGACAGCGGC 1855 33 100.0 36 ................................. TGGATGGTGTCGGCCAGCAGCACGGAAATGATCCCG 1786 33 100.0 34 ................................. CCGTCACCTGTCACCCGCCATTTTCAAAAACTAA 1719 33 100.0 34 ................................. TCCTGCTTATAGGCAAGCCAGTCGGTGAATGCGG 1652 33 100.0 34 ................................. TGTAAAAAGGCCAAGATCGACAGCGTCAAGCCTC 1585 33 100.0 35 ................................. AGTATCTCGTAAGCAAGGGTTATGTCCGGGGCGGT 1517 33 100.0 34 ................................. TTGGGAGAACGGAATTGTAAACGAGTGTGCCTTT 1450 33 100.0 34 ................................. TCCACCGTCTGGCCGACTTCCTCATATATGCCCC 1383 33 100.0 35 ................................. TTTTCCCCCGTCATTTGGAGGTAGCTCCCCTTGCT 1315 33 100.0 34 ................................. TTCGACTGCGGTAATGGTGGAGGACGAAAACGAG 1248 33 100.0 34 ................................. CGTGCCGGGATGCTGCTTACATCCAGTCCCAGCA 1181 33 97.0 35 ..T.............................. TTTTTATCCGTACCGCATTCACACTCCTTCCGACG 1113 33 100.0 34 ................................. CGTGCCGGGATGCGGCTTACATCCAGTCCCAGCA 1046 33 93.9 35 ..T...................A.......... TTTTTATCCGTACCGCATTCACACTCCTTCCGACG 978 33 100.0 36 ................................. CACACTGGTTTTGAACGCCTTGAAAAAGCCCAGAGC 909 33 100.0 34 ................................. ATCAGAGATGGAGAGATTATCGTCAATGGTGAAG 842 33 100.0 35 ................................. CTTGATCTATGGACAAATGGTAATTACCTGCATGC 774 33 97.0 33 ..........C...................... CACAGTCAGTAGCATAAAAAAGCCGGTCATAGC 708 33 100.0 36 ................................. ATTGCCATAGATCCATTTAAACTCCGGTCCGGAAAA 639 32 97.0 35 ..............-.................. TGTCACATTGGGCGGCCCCAATATCTATGTTGATA 572 33 100.0 34 ................................. GATCTGGCTGAGCACTTTGAAGTAACGGAAGATT 505 33 100.0 34 ................................. GCCATGAGCCTCCCCACCCGGCTGGTCGACGAAG 438 33 100.0 36 ................................. ACGCTGTACAACGTGGCCCCGGTTATCATGGTGAAC 369 33 100.0 35 ................................. TTCCCAGGGGGCACGGTTCAAGAGTGGTTCGACTA C [365] 300 33 100.0 33 ................................. CGGAGTGGAGTAACCTATCTTACACCTTTGAAG G [286] 233 33 100.0 34 ................................. AAGGAAGGATTTAGCTGAACAGCTGGAAATCCCC 166 33 100.0 32 ................................. CTCGTCAAACATGGGGTAAACCAGGCCATCTG 101 33 100.0 35 ................................. TCTGCGTCTCTGCTCCAGAGCCTGGGTGGCGACAC 33 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 40 33 99.6 34 GTCGCCCCCCTCGCGGGGGGCGTGGATTGAAAT # Left flank : GGATTGAAATCCCAAAATCCCTCAACACAGCCGCGCCTCGTAT # Right flank : T # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCTCGCGGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.60,-10.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [24-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 2515-47 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKI01000099.1 Pseudoflavonifractor sp. 60 Scaffold24_2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 2514 33 100.0 34 ................................. TCCAGCTGCCTCAAGGCCGCCTGGACCGCCACGA 2447 33 100.0 36 ................................. CAGGAAATCAACGCCTCCTTTGACAACGTCCACAAA 2378 33 100.0 35 ................................. CTCCCAGGACGTCTCCGGCTTTGTCCACGGCGTCC 2310 33 100.0 34 ................................. TCCAGCTGCCTCAAGGCCGCCTGGACCGCCACGA 2243 33 100.0 35 ................................. CTCCCAGGACGTCTCCGGCTTTGTCCACGGCGTCC 2175 33 100.0 35 ................................. AATAATTTCCCGGAGGCGGGCAATCCCCTTTTCGT 2107 33 100.0 34 ................................. CAAAACCAGGCGTGATACAGGATGCTGTCCAGCA 2040 33 100.0 34 ................................. ATCCATTGGCTGCTTCCTCCTCCGGCTTGTGGCG 1973 33 97.0 34 ..........C...................... CAAAACCAGGCGTGATACAGGATGCTGTCCAGCA 1906 33 100.0 34 ................................. ATCCATTGGCTGCTTCCTCCTCCGGCTTGTGGCG 1839 33 100.0 35 ................................. CACCCAAGGGTGGAGATCGAGATTGAGGAGGCTGG 1771 33 100.0 34 ................................. CTCTTTACCTCTCTGCTGATCTGCGCCGAGTGCG 1704 33 100.0 34 ................................. TCCCAGGTCAGCTTTTTCAGCACCTCCACGATGA 1637 33 100.0 36 ................................. TGACGATCACCAACAAGGACCGGCTGGAGGTCAGTA 1568 33 100.0 34 ................................. TTCCGGACGCGGAGCAGCTGAAAGCGCTGGTCCG 1501 33 100.0 34 ................................. CCTTGTTAGGTAGAAGTCCTCCGGCTCCATAGAG 1434 33 100.0 35 ................................. ACCGCCGACGGAAAAAGCGCCGTGCTGGACGGCAT 1366 33 100.0 35 ................................. ATACATGAGCATGGTAGAACTGCCCGGCGGCGGAT 1298 33 100.0 34 ................................. CCTTCCATACCTTCCAGGAGTGGAAAGCCCGCGG 1231 33 100.0 34 ................................. AACCCGGAGGCGGTGAGCAGCGAGGGCTGCTACG 1164 33 100.0 35 ................................. TTGGTACCGTCGGCGTCTCTTCTCCAAAAACTCCC 1096 33 100.0 35 ................................. AAGTATGGCGTCTCTATAGACGTTGAAACTCCGCC C [1092] 1027 33 100.0 35 ................................. ATCTCCAGCCCCGTGTTGAAGAACACGTACCTGAC 959 33 100.0 34 ................................. TGCCACTTCCGCTTCATGGCCGCCCCCTTCTGCC 892 33 100.0 35 ................................. CAGATCAAAGTCCCCTCCCGGTAGGGGTTAGCCGG 824 33 100.0 35 ................................. CTTTGGAACTCATTGATCGCGGCTTGAATGACAGT 756 33 100.0 34 ................................. CCCAAAATCCCTCAACACAGCCGCGCCTCGTATC 689 33 100.0 34 ................................. TGCCACTTCCGCTTCATGGCCGCCCCCTTCTGCC 622 33 97.0 34 ..........G...................... CCCAAAATCCCTCAACACAGCCGCGCCTCGTATC 555 33 100.0 34 ................................. CAAAGGAACATCCCTACCAGCGCAGGCGTTTATT 488 33 100.0 35 ................................. CCGTGACGCACTCCATACTTCCAAGCGGCTTTGCT 420 33 100.0 35 ................................. TTATTTAAAACTTATCTAAAAATTAACTATTTATC 352 33 100.0 35 ................................. ATTCGCTCTGGCTCCGATGCCTTCCGTCCCCGAAG 284 33 100.0 35 ................................. CTCCGATGCCCTGTCCCGTATGGTGGCTTTTGCCC C [280] 215 33 100.0 36 ................................. GTCAAAAATCTGCTGAAGAGAGGAAGAAAAAGGGGA 146 33 100.0 34 ................................. CTGGATGGGCTACCAGGCCCTGCCCGTCACAATG 79 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 37 33 99.8 35 GTCGCCCCCCTCGCGGGGGGCGTGGATTGAAAT # Left flank : GGATTGAAATTCCATCAGACCTTCACCTCGCTTGTCTTGGTCC # Right flank : TCAGCCCGTGGTCGTCCCCCTGCCGCCGGAACCACGGTCGCCCCCCT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCTCGCGGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.60,-10.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [5-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [16.7-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 201-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKI01000100.1 Pseudoflavonifractor sp. 60 Scaffold24_3, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ================================== ================== 200 33 100.0 34 ................................. GCTTACATCGGCCACTGATACGCGCAGGACGTGG 133 33 100.0 33 ................................. ATTTTCCCAATCAGGGTATGTAACCATATCACA 67 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ================================== ================== 3 33 100.0 34 GTCGCCCCCCTCGCGGGGGGCGTGGATTGAAAT # Left flank : GGATTGAAATTCCATCAGACCTTCACCTCGCTTGTCTTGGTCC # Right flank : TATCTGTTCCCGTCCAGTTTCGCAGCACATAGATT # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCTCGCGGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.60,-10.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [30.0-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 1476-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKI01000101.1 Pseudoflavonifractor sp. 60 Scaffold24_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 1475 33 100.0 34 ................................. GCCCCGGTCTTGACGGCGGTGGTGCAGTCCTCCC 1408 33 100.0 33 ................................. TGGACTATGGTGGGGATACTGTCCGCCAGCCCT 1342 33 100.0 35 ................................. CAGAATTCTGACGCCATGCTCAAACGCCATTTAGC 1274 33 100.0 34 ................................. TCCTTCGCGTTTACGGCCCGGCGGCCCTGGTTTT 1207 33 100.0 34 ................................. TCCTTCGCGTTTACGGCCCGGCGGCCCTGGTTTT 1140 33 100.0 34 ................................. TGCATGGCGTAGAAGCCGTCGTACAGCCCCTGAG 1073 33 100.0 33 ................................. ACCGCCCCCGCGCCGTCCGTCTCCCCCACAATG 1007 33 100.0 34 ................................. TTAACGTGTTATTATATAAGCACGTTAAGAAACG 940 33 100.0 34 ................................. TGCTCTCCATCACTAAAAGGAGAACAGGTTACAG 873 33 100.0 33 ................................. TGCTTTACGCCGGACGGAGATAGCTTCTTCTAC 807 33 100.0 34 ................................. ATCGCAAAAACCGTCCATATTTTCCATGCGTGGG 740 33 100.0 34 ................................. TTTGTAATACGCCTGGTTCCGTGCAACCACATCG 673 33 100.0 33 ................................. AATCCCCGTGTATTGCGCAATAGTTTCTGGTAA 607 33 100.0 34 ................................. CCGCATTCCCTCTATGGTATCCGCCCGTGCAATG 540 33 100.0 34 ................................. TGGAATATCTGAAAGGGGCGGACCAGAACACCAG 473 33 100.0 34 ................................. ACCGGGTCCACATCCCACACGGAGGCTTGCAGGT 406 33 100.0 36 ................................. TGTAAATGGCCGTCAGCCATATCACAATGTCCTCCG 337 33 100.0 35 ................................. GGCCTGCCCGCCGCCGCCCCGCTCGTCCCTGTGAC 269 33 100.0 34 ................................. CTCCTTACGCCGCCAGCGCCGTCTCCATGTAGGA 202 33 100.0 34 ................................. TGGAGAGGCGGGTTGTAGATTTCCAGCGCGGCGG 135 33 100.0 35 ................................. TTGAAGATGAGGAATTCCATTTTGAATGCCTGAAA 67 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 22 33 100.0 34 GTCGCCCCCCTCGCGGGGGGCGTGGATTGAAAT # Left flank : | # Right flank : TTCGAGTCACCCAGGATTTGGGCCGGTCGATGGAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCTCGCGGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.60,-10.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [23.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.64,9 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 473-35 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKI01000102.1 Pseudoflavonifractor sp. 60 Scaffold24_5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ==================================== ================== 472 33 100.0 33 ................................. GCCTCCCAGCTATAGAGGGCACGGTCGGATGGC 406 33 100.0 34 ................................. CTAATAGCTTCCCTCCTTTAAGAAGCCCGCCATA 339 33 100.0 36 ................................. TTTCACGGTGTCTGCAACTGCTACTGGCAGAAAAGG 270 33 100.0 34 ................................. CTAATAGCTTCCCTCCTTTAAGAAGCCCGCCATC 203 33 97.0 36 ......................C.......... TTTCACGGTGTCTGCAACTGCTACTGGCAGAAAAGG 134 33 100.0 34 ................................. TTTTTCTCTTAAAAAAACTTGGCTGGGGGGTCGT 67 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ==================================== ================== 7 33 99.6 35 GTCGCCCCCCTCGCGGGGGGCGTGGATTGAAAT # Left flank : CTTGGACGCTTATCCACCGTTTTTATGGAAGTGATTCAGATGCTGATTTTAATCACCTACGACGTGAATACTGAGGACGCTGCCGGGCGCAAGCGTCTGCGGCAAATTGCCAAGCAGTGCGTCAATTATGGTCAGCGGGTGCAGAACTCTGTCTTTGAGTGTCTGCTGGATGCGGCCCAGTGCCGGATGTTGCAGGCCAAGCTGTGTAAGCTCATGGACCCGGAAAAAGACAGCCTGCGCTTTTACTACTTGGGCAACCGCTATGAGAACAAAATCGAGCATTTTGGAGCAAAGGTATCTTACAGCCCAGAGGATGTATTGATGCTTTAGGTGCGAAGTGCAAGCGAACAGAAAACCCCCGCGGGTTCGCACTAAGTTTTTTGGCGTTTTCTGTAAGTATATGCCCCTGTTTTCGAAAATTGAGTGGGTGTATGGAGGGGATATTTGAAAGAATTGTCTACTTGTTGTAAAAACAGCTTGAGATTTTGGCTGTTTTTGCT # Right flank : TGTTGCTGCACTTGATCCGGTACCAGAGCCGCATC # Questionable array : NO Score: 9.04 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCTCGCGGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [6,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.60,-10.40] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [23.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.27 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 55-1982 **** Predicted by CRISPRDetect 2.4 *** >NZ_QWKI01000185.1 Pseudoflavonifractor sp. 60 Scaffold63_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 55 33 100.0 36 ................................. CGTTTTCCGGCCCGTTGGAATATCCAGCAATCAAAA 124 33 100.0 35 ................................. CTCCTTACTCCGCCGCCGGTATGGTGGTGGCGGGT G [138] 193 33 100.0 36 ................................. CGTTTTCCGGCCCGTTGGAATATCCAGCAATCAAAA 262 33 100.0 34 ................................. CTGGGCCTTCAGGGTATTGGACAGGGTTATGTCC 329 33 100.0 33 ................................. TGGTCACCGTTGACCTCGTACAGCAGGGCGAAA 395 33 100.0 34 ................................. TTTGCAAAGCCGGGAGACATTGGTGAAAATCACA 462 33 100.0 34 ................................. CCCGTGATCCTGGACCTGTGGTCTGGGAATATGG 529 33 100.0 36 ................................. TCGTTATTTTTGAGGTATTCCCGGCTGTAGGCCACC 598 33 100.0 33 ................................. CTGGCCCCGCATCTGGCGTGCTGGGCGATGGAC 664 33 100.0 34 ................................. AATGGTCCCCTTTTCATAGCGCTGTACGGTTGAT 731 33 100.0 34 ................................. AGTCTCTGTGCCGCAGGCTGAACCGGTTTTCTCC 798 33 100.0 34 ................................. GGTTATTGGTCTGCGTAATTGCCGGAATTGGACT 865 33 100.0 35 ................................. CGCTGTACTGCGGGCAAAAACGAGAAATCACGGAG 933 33 100.0 35 ................................. TCGGGCAAGCACAAGCGGTACATAAACTCCGCCCT 1001 33 100.0 37 ................................. TGACCAAGAAGGGCTGCGACATGGTGGCGAACAAACT 1071 33 100.0 34 ................................. AAATATGTTGCTCCAATCGCTGGTGCTATGGGGT 1138 33 100.0 35 ................................. CTCTCTATCGGCAGTAGTATTGTAGACGGCCTAAA 1206 33 100.0 33 ................................. TCCTTCTCCTCCTTCTCCCCCATCTAATTGACT 1272 33 100.0 34 ................................. TTTGAGGGCAAGGAGCTCGTAAAGAGACAGAGAC 1339 33 97.0 35 ....................T............ ATAGATTTCATCCACCACGTCAGCCAGAAGCTCAT 1407 33 100.0 35 ................................. CGCTCCAGGTCCCTGGCCCTGGCCCGGACGGTGTC 1475 33 100.0 33 ................................. CAATATGGAAAATGTTCGGCCCATGCCGATTTT 1541 33 100.0 34 ................................. ATCCTCTCCATGCCCGGGCGGCATGTGGTAACGG 1608 33 100.0 36 ................................. TGTTTTGATTTTTAGCCAATCAACGGCCACAATCCC 1677 33 97.0 35 ............A.................... AACGTCTCGTTCCATACGCCCGTCACCACCAGACC 1745 33 100.0 35 ................................. CATTCCCCAATCTAATTGACTCAATATGTGAGAGC 1813 33 97.0 36 ................................A GACGCCATGCTGGACGAAGAGACCGGAGAGTATGAC 1882 33 97.0 35 ................................A GGGACTTAATCTGCAAATCGTCCAAATGGAGACCA 1950 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 29 33 99.6 35 GTCGCCCCCCTCGCGGGGGGCGTGGATTGAAAT # Left flank : GGGGGGCGTGGATTGAAATCTCCTTACTCCGCCGCCGGTATGGTGGTGGCGGGTG # Right flank : TACGAAAAGTGCCGTCGGCTGCTGGCTTGGCGGCAGGGGGCGCCACTTCAGGGAATTTGTCCGAGGCGAGTCTTTGATTACATCGGTAACGGCTTCATTGAAGATGTGGTCGAATCTGCCGTCAATGTCCACCAGTATCTCTTCCGTAAGGTCATACTTGAAGTTCTCAATGGCCTTCAGGGTGCTTTCGGACAGCGGCGGTATTTTGCAGCCAGCCGGATCAGTCAGCAGGCAGGTGAACAGGTTTGCACGGTCGTCCCTCAAGGCATAATTGGCTGTCGGCGCATTATTCATGATATCCAGCAGGAGGCTTCCGGCAGTCCGGCGGGGACGGTTGTTAAAGAGCTTCGCAAGCGTCTCAATCTCGGCCAGCAGAGTGTTGTACTCCTTATCAGCAAGGTATCGAAATCGCCGTTTTTGGCTTTTTGGACGAACAGGACGGCGGGGTTCTCGATGTAGGAATCCGTACTGCGGCGAAGGATGTGATCAATACATCGGAC # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCCCCCCTCGCGGGGGGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTCGCACCTCTCGCGGGGTGCGTGGATTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-10.40,-10.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [31.7-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //