Array 1 27974-27748 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JADNOC010000034.1 [Ruminococcus] gnavus strain 1001302B_160321_G6 NODE_34_length_28049_cov_53.8705, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                   	Insertion/Deletion
==========	======	======	======	================================	==================================	==================
     27973	    32	 100.0	    34	................................	AGACATTCCTCACCTGGCTGCATCTCACAAAAGA	
     27907	    32	 100.0	    33	................................	AGTTTTAGCCAGTAATACTTTTTAGCCATAGTC 	
     27842	    32	 100.0	    33	................................	ATTACAAATACGCCTCCCTGATCTTTGCTTTAA 	
     27777	    30	  87.5	     0	........................--..GT..	|                                 	
==========	======	======	======	================================	==================================	==================
         4	    32	  96.9	    34	GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	                                  	       

# Left flank :   GTATAAAATGGATGAAATCAGTGAAGAGGAAGCAGTATCAATTTAATATAGCAATTATTTAATATTCGTTATACT
# Right flank :  ATGTGGTGGACGGGCTGCCGGAAGATGCCGATGATTTCCGGTATCCGGGAGATGCGATCGAACCGGAAATACAATCGGAGTTGGAACGTGCATTAAGCGGGGAAACGGTATTGCCGGAGAAGATTCTGGATACAGACTGGGGAAATATTTTTATTGCTTATTATCCGTTGTATAATGAATCAGGAGAAGTCATCGGTGCACTTGGAATAGAAGTTGCGGCAGATATAGAAGCCGAGGCGGTACATGACAAATCCATTATACAGAGACATGGCAAATACTGATTTTATGACAGAACTAAAGAACAGAAATTCTTATGAGACAGACCGGCAGAACCTGGATGCAAAGAAGAAATGGAATGGCCTGACAGTGGCAGTGATCGATGTGAACAATCTGAAGCTGGTAAATGATCGGCTGGGGCATGCTGTGGGTGATGATTGTATTGTGAATGCAGCACGGGTCCTGCAGAGTGTTGAATCTCAAAAAGTTACGGCGTATCGATA

# Questionable array : NO	 Score: 8.71
# 	Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [9,7] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCACTCGCTACGCGCGAGTGTGGATTGAAAC with 91% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-5.80,-5.00] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      R [3-0] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: R [40.0-75.0]%AT Score: 0.27/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [0.74,9.68   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//


Array 1 326-162 		**** Predicted by CRISPRDetect 2.4 *** 
>NZ_JADNOC010000042.1 [Ruminococcus] gnavus strain 1001302B_160321_G6 NODE_42_length_19584_cov_43.2292, whole genome shotgun sequence		Array_Orientation: Reverse

  Position	Repeat	   %id	Spacer	Repeat_Sequence                 	Spacer_Sequence                    	Insertion/Deletion
==========	======	======	======	================================	===================================	==================
       325	    32	 100.0	    33	................................	GATGCAATATCCTTTAAAGCAAGCCTGTAGCCC  	
       260	    32	 100.0	    35	................................	TAATCCAGAGTAGTTTAATCGACTCCCCCAGTACC	
       193	    32	 100.0	     0	................................	|                                  	
==========	======	======	======	================================	===================================	==================
         3	    32	 100.0	    34	GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT	                                   	       

# Left flank :   ATCCGGTATTTCTCTGGAAATGAGGCGAAAATGGGATGTTAGTGTTGATTACATATGATGTGAACACAGAAACAGCGGCTGGAAAGAGGAGATTGCGCCAAGTGGCAAAACAGTGTGTAAATTATGGGAGAAGAGTGCAAAATTCTGTATTCGAATGTATCTTAGATAATGCACAGTGTGTTATGCTTAAGGCAAAACTGACAGATATCATCGATGAAGAAGTTGATAGTTTGAGATTTTATTACTTGGGAAATCAATATAAAACAAAAGTCGAACATGTTGGTGTAGACAGAGGAATTTCGGCGGATGGAATTCTTATTATGTAACTGGGGTGCGGATGATAAGCAAACATAAAAATGCTGGGAGATTCGCACCAAAAAAATGCACAAAAATTAGTTGAAGAGGTGAAAGTTAGAGAAATATGATGAGGAAAAGAGAATGATATTGGTAGAATTGAGTAATATTAAAGAATATAAAGCCTAAAATTAGGCAAAATTGCT
# Right flank :  TTTTTTTGGTTTTATTAAAAAGGGATTGTTCATCTAGTATAGAATAAATTAAATTTCTACTATATATTTTGAGGATAATGTATGATAAAATAGTGTTATCTAAGAAAGGATGAACACTATGAGAAAAACATATCTTCCTCTGTCAGATGAAGACAGAGATTA

# Questionable array : NO	 Score: 8.67
# 	Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1,
# 	Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats),
# Primary repeat :     GTCACTCCCTTCGCGGGAGTGTGGATTGAAAT
# Alternate repeat :   NA

# Directional analysis summary from each method:
# 	Motif ATTGAAA(N) match prediction:         R Score: 4.5/4.5
# 	A,T distribution in repeat prediction:     F [9,6] Score: 0.37/0.37
# 	Reference repeat match prediction:         R [matched GTCACTCGCTACGCGCGAGTGTGGATTGAAAC with 91% identity] Score: 4.5/4.5
# 	Secondary Structural analysis prediction:  F [-10.00,-9.30] Score: 0.37/0.37
# 	Array degeneracy analysis prediction:      F [0-1] Score: 0.41/0.41
# 	AT richness analysis in flanks prediction: NA [80.0-76.7]%AT Score: 0/0.27
# 	Longer leader analysis prediction:         NA 
# 	----------------------------------------------------------------------------
# 	Final direction:         R [1.15,9   Confidence: HIGH] 

# Array family : I-C [Matched known repeat from this family],   
//