Array 1 629-447 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKIA010000022.1 Schaalia cardiffensis strain CCUG 44997 Scaffold22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 628 37 100.0 38 ..................................... GGAAGCATGCAACCCATTTCCACACATGTGGTCGTCTC 553 37 100.0 33 ..................................... CAGATATATGAGCTCACGCCGAGCAGGCTGACG 483 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ====================================== ================== 3 37 100.0 36 GTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGAC # Left flank : AGTCCGCAGGTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGACTTTTCGACGAAGTGATCAAGTGGGCTTAACCGCCGTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGACTCGCACCTCATTTACTGGAAAGGAGGTAGCTTATGGTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGACTTATGAAGGGGTTGCGGGAACCATCGCCAATGAGTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGACATGGACAGCGAAGACCGTCAGCTCGCACACTCTGCATGTCTTAATGCACCTTATGGTGCGAGGTACTTTCTGACACCTCGGGGAAAACCCGGGAGAGGGTGGATACGTATAGTCTTAATGTACCTTATGGTGCGAGGTGCTTTCTGACGCCGCGAAANNNNNNNNNNTTAATGTACCTTTTGGTGCGTGGTGCTTTCTGACGCCGCGAAAAGCCCAGCGACCCCACCCCCGACCCCCTCGC # Right flank : CTCCACCCCGAAAACACCGCCTCTGAGCAGGCAGAACATTCGAGTTATCGCCACCGACCTGAAAAGCACCAACCAAGTCGTCCAGCACCACCCCCATTAAAGCACATATGCCCAGGTCATGGGGTGATCGCCACCGAAGCGCTCAGAGCGCGTTCGTCCGCCGGATCTCAACGTGTTCTTCAGGAAAAGTCGGTCTGTTCGCGAGAAACTCGGCACACGAGGAACAGGAAACGGGCGCACAGCTGACTCTGAGTGACGACCCTACGCAGCCAGGGCCCAATAGAGGGAGAGCCCATTGAGAGCGCCTCGCCCCAACACAGTCCAAACACGGGATACCGGCAAGGAAGTGTGGCATCGACCCGGACTTTTCGTTGATCTGACCGCGTAAAGTCGCGTTCCCCATAGGGGTGGGGCCTATATGAGCGGGTGAGTGTTGACAAGCGCCCC # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAATGCACCTTATGGTGCGAGGTGCTTTCTGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [41.7-28.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA // Array 2 722-1622 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKIA010000022.1 Schaalia cardiffensis strain CCUG 44997 Scaffold22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ===================================== ================== 722 37 97.3 37 ...........................A......... TATACGTATCCACCCTCTCCCGGGTTTTCCCCGAGGT 796 37 97.3 37 .........T........................... ATGCAGAGTGTGCGAGCTGACGGTCTTCGCTGTCCAT 870 37 100.0 33 ..................................... TCATTGGCGATGGTTCCCGCAACCCCTTCATAA 940 37 100.0 35 ..................................... CATAAGCTACCTCCTTTCCAGTAAATGAGGTGCGA 1012 37 100.0 34 ..................................... GGCGGTTAAGCCCACTTGATCACTTCGTCGAAAA 1083 37 100.0 36 ..................................... CTGCGGACTGCGCCTCTCGCCTGGCCTGCTCGGCCG 1156 37 100.0 35 ..................................... CATAAGCTACCTCCTTTCCAGTAAATGAGGTGCGA 1228 37 100.0 35 ..................................... TGAGATGCTACCATCCCCCAATAACCATACTTTGC 1300 37 100.0 37 ..................................... AACAAGACGAGTAATCTGGCCAACAATGTCGGCCTGA 1374 37 100.0 34 ..................................... ATCTATGTAGCCTGCCAATACTACTATGAATATG 1445 37 97.3 33 .................G................... CGCCTAGCCGTTGCCAGCTCTTCAGCCTTAACT 1515 37 97.3 34 .................G................... CTTTCAGGTAGGGGGCGATGATCGGCCACGCCGG 1586 37 89.2 0 .................G..............TG..T | ========== ====== ====== ====== ===================================== ===================================== ================== 13 37 98.3 35 GTCAGAAAGCACCTCGCACCATAAGGTGCATTAAGAC # Left flank : TGTTCCTCGTGTGCCGAGTTTCTCGCGAACAGACCGACTTTTCCTGAAGAACACGTTGAGATCCGGCGGACGAACGCGCTCTGAGCGCTTCGGTGGCGATCACCCCATGACCTGGGCATATGTGCTTTAATGGGGGTGGTGCTGGACGACTTGGTTGGTGCTTTTCAGGTCGGTGGCGATAACTCGAATGTTCTGCCTGCTCAGAGGCGGTGTTTTCGGGGTGGAGTCAGAAAGCACCTCGCACCATAAGGTGCATTAAGACCGTCAGCCTGCTCGGCGTGAGCTCATATATCTGGTCAGAAAGCACCTCGCACCATAAGGTGCATTAAGACGAGACGACCACATGTGTGGAAATGGGTTGCATGCTTCCGTCAGAAAGCACCTCGCACCATAAGGTGCATTAAGACGCGAGGGGGTCGGGGGTGGGGTCGCTGGGCTTTTCGCGGCGTCAGAAAGCACCACGCACCAAAAGGTACATTAANNNNNNNNNNTTTCGCGGC # Right flank : TGTGTCGACGATGAGGGAGACGCAGGACACGACCTTGGATCAGAAAGCGCCACGCCCCACGCCTGAGGGACATTCACCCCAGCCTCGCAGCGCCCCACGCTCAGAGGGCAGAAGAAGCCCCTTGCCGTTCAAAATCCAGAAGGAACTGTTTCGCTTCCACGCCGCCCCGGTAGCCGCCGAAGGACCCGTCTCTGCGGGTGATGCGGTGACACGCCTGAATGAAGGGCAAAGGATTCGCCGCACATGCGTTTGCGGCAGCGCGATGAGCCTTCGGGTGCCCGGCCGCGGCAGCCAATTGCGAATAGTTCATCGTCTCTCCGAAAGGAATCGTGGAGAGAATCGCCTGAACCTCGGCAAAAAAACCCTTCGACAAACACCGGTCAAGAGGCAGATCAAAACTTTGACGCTTACCCGCGAAATACTCAGTCAACTGGCGCTTCGCCAAGTCAAGCAGGGGAGTGGCATCTTCGTGAATCTCCTCGTGAAGCACCTGGGCGACG # Questionable array : NO Score: 3.17 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCTCGCACCATAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.40,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [2-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-36.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA // Array 1 3359-219 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKIA010000027.1 Schaalia cardiffensis strain CCUG 44997 Scaffold27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 3358 29 96.6 32 ............................T ATTTGACGCGACTTTCCCAATCGACTGTCACG 3297 29 96.6 32 ............................T TAATTCTCTGCCCTTGGCGACAATCTGCCCCA 3236 29 96.6 32 ............................C TGACTCGCGCCGCCGTCGCCGGCGATTCCATC 3175 29 100.0 32 ............................. AGCTACGCGACCTGGTAATGCGCGTGGTGCAG 3114 29 100.0 32 ............................. TAGGCATTAGGGATGTCCTTTCAAGAGGGGCC 3053 29 100.0 32 ............................. CTCCGCTTGCCGATTAGCAAGGATTTTGGCGA 2992 29 100.0 32 ............................. AGGCCGCACCCCCGCTGGTCCTCGCTTAATCC 2931 29 93.1 32 ......................G.....T TCCAGTCCTGCGCATGGCTGCGAACAGCATGA 2870 29 100.0 32 ............................. TCAGCTTTCCGGGGCCGAGTTTCCTTGGCGTG 2809 29 100.0 32 ............................. TCCACGACCTCCGGCCTCGCATTCCCCGGCTC 2748 29 100.0 32 ............................. AGGCCGTGTCAGCGGGCCTGGCCGATGAGGCA 2687 29 96.6 32 ............................C ACCATCACCATCGAGTCCATGCAAGCGGAAAC 2626 29 100.0 32 ............................. ATCGCGACGCGACTACTTCCCGAGAGTTGGAC 2565 29 100.0 32 ............................. ATGACCCGCGCACGGGCGTCCTGAGTGCGGAT 2504 29 100.0 32 ............................. GCGGAGGCACCGGAGGCACCGGAGGCTGCGAG 2443 29 96.6 32 ............................C CGGCGCAATCCTCTGGCCCGCCGCACACCGCA 2382 29 100.0 32 ............................. TCGACGAGCTGATGATCCGCCGTATTGGCGGT 2321 29 96.6 32 ............................C CTCACACTTACCCCCATCCGCTCGGAGCCAGC 2260 29 100.0 32 ............................. TTGTTCGTGTGTAGAAAGCACCTTTTTCGATA 2199 29 96.6 32 ............................C GCGGCTTGTTCGGTCGGTCGATCTTTTGATGC 2138 29 96.6 32 ............................T AGTCAATCGAGGAGTAAGGACCTCGTCCTCGC 2077 29 100.0 32 ............................. TAAGGGATCGCTCGAGGAGTCGCCGGGTGTCG 2016 29 96.6 32 ............................C GAGGGCGACCGCGAGGAACGCCCACCGCTTCC 1955 29 100.0 32 ............................. CCGAACTTCAGGCCCTCCCAGACGCCTTGCAG 1894 29 96.6 32 ............................C TGGGCAGGATCGCAGGAGTGGTCTCGTGAGAC 1833 29 100.0 32 ............................. AGTGGATAGCGTTTGTTCGTTTCACGCTCGCC 1772 29 100.0 32 ............................. TCGCTCGTTATCAATTTCAACTGAGCTGACTC 1711 29 100.0 32 ............................. TTGTTCTCGTTTGGTAAGAAGCAGGCGACTAA 1650 29 100.0 32 ............................. AACACTCTCCTGCAAAACCGCGTCAGCCCACA 1589 29 96.6 32 ............................T GAGGTCTTTGAGGACCGTTCCGATGCTGCGCG 1528 29 96.6 32 ............................C TCCTACCCCTGGCCACCAGCGCCGTCACCTTC 1467 29 100.0 32 ............................. TCGCTGACGGGCACGCCTCCGACGTAGGCGGC 1406 29 100.0 32 ............................. ACCCCAAGGCCTACATCGAGGCCGTTGCTCCC 1345 29 100.0 32 ............................. GCCCCTGTCTTGGCGGTGGCGTAGATGCGGAC 1284 29 100.0 32 ............................. CTCTTGCTGGTGCTTCGCAAGATCGGCATAAA 1223 29 96.6 32 ............................C ATTTTGAAGAACAGTTGACTGTTTGTTCTCAA 1162 29 96.6 32 ............................T CGCCGGTAACACATGGCAGATCGACGAAACGA 1101 29 96.6 32 ............................T GTATCGCGGACGCTGCCGATCATTGACCGAAT 1040 29 100.0 32 ............................. ACCGTGAGGAACTGCCTGCACGACCTCGAAGA 979 29 100.0 32 ............................. TGCGACGGAGACGTCGGAGTGGCCTCCTCGGT 918 29 100.0 32 ............................. CCCCTCGCAGGGTCGTCCTTCAAGACGATGGC 857 29 96.6 32 ............................T CCTCTCCCGCCGGAAATCCACATAGCATCTGA 796 29 100.0 32 ............................. CGACACGGATGCTCGAGCCGCGGGCTACATTC 735 29 96.6 32 ............................C CTGATTCTGCGGGTCTTGATCCTGGGCCAGTG 674 29 100.0 32 ............................. CTCACCTTTCCTGGGATGATTACTCTGCTGCC 613 29 100.0 32 ............................. ATTTGGCGGAACCGGGTGCCGGTCTTGATACC 552 29 100.0 32 ............................. AACGAGGCCGGGGACCGCATGTTCAGCCACAT 491 29 100.0 32 ............................. GCCGCGCGCCGCCTCAGTCGGCTCCCCAGCTG 430 29 100.0 32 ............................. GAGAGGGACGCGGCTTCCGGGGTCCCGCAGTA 369 29 100.0 32 ............................. CGCGTAGCGCTTGGCTGATGGACCAGGAACAG 308 29 100.0 32 ............................. CCTCCGAGGGCGGCGATTACCTCTGGGGTCAC 247 29 96.6 0 ............................C | ========== ====== ====== ====== ============================= ================================ ================== 52 29 98.7 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : GAGCCGACTACGCCGATGACATAGCCGATTTGGCTGA # Right flank : CGTTACCTTGTTGGTGGTTGCCGGTGAATGAGTGCCGGTGGCTGGGCCAGCGGTGGTCGGCATGATGTTTTGCCCCTGTCTTTGAATGGTCCGGGGGGTGTTGTCACCGGCCGCCGCGGGGCTGCTGCTCACCGCTGATCAGGGGAACGACCCGCTCGAGGTCTTTCGTAACGTGGGTGCGGGATCGGCGGCTCAAGGCTGGCCCGATCTCCTACGAGA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-26.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 79528-78550 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKIA010000011.1 Schaalia cardiffensis strain CCUG 44997 Scaffold11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 79527 37 100.0 33 ..................................... CGTCAGCCTGCTCGGCGTGAGCTCATATATCTG 79457 37 100.0 38 ..................................... GAGACGACCACATGTGTGGAAATGGGTTGCATGCTTCC 79382 37 100.0 40 ..................................... GCGAGGGGGTCGGGGGTGGGGTCGCTGGGCTTTTCGCGGC 79305 37 97.3 37 ...........................A......... TATACGTATCCACCCTCTCCCGGGTTTTCCCCGAGGT 79231 37 97.3 37 .........T........................... ATGCAGAGTGTGCGAGCTGACGGTCTTCGCTGTCCAT 79157 37 100.0 33 ..................................... TCATTGGCGATGGTTCCCGCAACCCCTTCATAA 79087 37 100.0 35 ..................................... CATAAGCTACCTCCTTTCCAGTAAATGAGGTGCGA 79015 37 100.0 34 ..................................... GGCGGTTAAGCCCACTTGATCACTTCGTCGAAAA 78944 37 100.0 35 ..................................... TGAGATGCTACCATCCCCCAATAACCATACTTTGC 78872 37 100.0 37 ..................................... AACAAGACGAGTAATCTGGCCAACAATGTCGGCCTGA 78798 37 100.0 34 ..................................... ATCTATGTAGCCTGCCAATACTACTATGAATATG 78727 37 97.3 33 .................G................... CGCCTAGCCGTTGCCAGCTCTTCAGCCTTAACT 78657 37 97.3 34 .................G................... CTTTCAGGTAGGGGGCGATGATCGGCCACGCCGG 78586 37 89.2 0 .................G..............TG..T | ========== ====== ====== ====== ===================================== ======================================== ================== 14 37 98.5 35 GTCAGAAAGCACCTCGCACCATAAGGTGCATTAAGAC # Left flank : CGTTCGCGTTCATCGGCGCTCGGCAGATCGGGCACTTGGGGCGCTTGTCAACACTCACCCGCTCATATAGGCCCCACCCCTATGGGGAACGCGACTTTACGCGGTCAGATCAACGAAAAGTCCGGGTCGATGCCACACTTCCTTGCCGGTATCCCGTGTTTGGACTGTGTTGGGGCGAGGCGCTCTCAATGGGCTCTCCCTCTATTGGGCCCTGGCTGCGTAGGGTCGTCACTCAGAGTCAGCTGTGCGCCCGTTTCCTGTTCCTCGTGTGCCGAGTTTCTCGCGAACAGACCGACTTTTCCTGAAGAACACGTTGAGATCCGGCGGACGAACGCGCTCTGAGCGCTTCGGTGGCGATCACCCCATGACCTGGGCATATGTGCTTTAATGGGGGTGGTGCTGGACGACTTGGTTGGTGCTTTTCAGGTCGGTGGCGATAACTCGAATGTTCTGCCTGCTCAGAGGCGGTGTTTTCGGGGTGG # Right flank : GTGTCGACGATGAGGGAGACGCAGGACACGACCTTGGATCAGAAAGCGCCACGCCCCACGCCTGAGGGACATTCACCCCAGCCTCGCAGCGCCCCACGCTCAGAGGGCAGAAGAAGCCCCTTGCCGTTCAAAATCCAGAAGGAACTGTTTCGCTTCCACGCCGCCCCGGTAGCCGCCGAAGGACCCGTCTCTGCGGGTGATGCGGTGACACGCCTGAATGAAGGGCAAAGGATTCGCCGCACATGCGTTTGCGGCAGCGCGATGAGCCTTCGGGTGCCCGGCCGCGGCAGCCAATTGCGAATAGTTCATCGTCTCTCCGAAAGGAATCGTGGAGAGAATCGCCTGAACCTCGGCAAAAAAACCCTTCGACAAACACCGGTCAAGAGGCAGATCAAAACTTTGACGCTTACCCGCGAAATACTCAGTCAACTGGCGCTTCGCCAAGTCAAGCAGGGGAGTGGCATCTTCGTGAATCTCCTCGTGAAGCACCTGGGCGACGC # Questionable array : NO Score: 3.19 # Score Detail : 1:0, 2:0, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCAGAAAGCACCTCGCACCATAAGGTGCATTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.35%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.90,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [36.7-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 156-1283 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKIA010000004.1 Schaalia cardiffensis strain CCUG 44997 Scaffold4, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 156 29 96.6 32 ............................T TGGGACGATTGAGTTTAAAGGGGGGTGTCCCA 217 29 100.0 32 ............................. GTCATTTCGGACTGGCGTTTCTCCGTGTGGAC 278 29 100.0 32 ............................. GCCCCTCACAGCCCCTCACCCCTCCCCTGCTC 339 29 96.6 32 ............................C TCGTGAACAACCTTGTCACCAACGGGCTTACC 400 29 96.6 32 ..............G.............. CTCGTCCCGGTGCCGGTCGCTCCCAGCACTGC 461 29 96.6 32 ............................T CGTAGACGCAACGACGTTTCCAATACCAGTAA 522 29 93.1 32 ...........C................T CACATTGCTTTTAATCTGGCTGATCTTGGTAG 583 29 100.0 32 ............................. AGTATGAGGGCGACGAGGGTGACCATCGCGTC 644 29 93.1 32 ...........C................C GAGGAGGCCGTACACGGTGAGACGACCCCGTA 705 29 100.0 32 ............................. ATGCCTTGGATGACGGTGAAGATGCTTTGGAT 766 29 93.1 32 .......T....................C GCATACAGGGCTCGGCGCGCATCCTGATAGCC 827 29 96.6 32 ............................C CACGGAGAACCGAACTCCCCGGAAACACGGGG 888 29 96.6 32 ............................C ACCCGATGCGCGCGCGATCCCCGATACATGGA 949 29 100.0 32 ............................. ATGCCTTGGATGACGGTGAAGATGCTTTGGAT 1010 29 93.1 32 .......T....................C GCATACAGGGCTCGGCGCGCATCCTGATAGCC 1071 29 96.6 32 ............................C CACGGAGAACCGAACTCCCCGGAAACACGGGG 1132 29 100.0 32 ............................. CGTTGTGTGGAGGTTCGGCATAGCGCTGGGTG 1193 29 93.1 32 .........................AT.. GCCTGCTGGGTGTCCGGGATGTTCAGGAACAG 1254 29 79.3 0 .....TT.....C...TA.......T... | C [1279] ========== ====== ====== ====== ============================= ================================ ================== 19 29 95.8 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Left flank : TCATCGCCCTAGCCCACCGCCGCATCCTCACCCTACACGCCATGATCCGAAACGCCACCCTCTACAACCCCCAACCCACCCACCAACTACCAACCGTCGCTTGACACACCACATAGGGGCACCCCCCATCCGCCAGCGTTAGGGCTGTGTGAGGCG # Right flank : GTCTGCATTGCACCCTTGGTAGCGAAGGCCTTGGCGATCTGAGGGACCGGCTCGCCATTCGGGAAAACCTGTACAAGCCCTTCGCTCCGCCTTTTGAGATAAGCCTTGGGCACGAGCAAAATCGTCACAACTGCGCAAAGCGCGACCAGATCATGTGTCACCAGGACCTGCACCAGACCCCATTGTTAACATCTGTATCACAGCTAACAACGCCGCAGCCTCTCACAGGCAGGTTTTGCAAAATCCCAACTTCTTCGGAACATGATGAAATAGGGGGGTGTCATCTGGGTTGAGGGCTTTCATGTCATCGTTGTGGGCGAGGTTGAAAGGCACTTATGGGGTTGATCTGATCCCTGAGCAGCCGCCTGTGCAAGAGAATCGCAGAACCGAGGCGCGGACCCGTCCCTTCGCCGCCGCTCGGAGAGGGATCCGTAGCGCGGCGCGCGAGAGTGAGCCACATTCCTCTGTTTCTTCCTCTGCTTCGCGAGTGCGTGAATATG # Questionable array : NO Score: 5.51 # Score Detail : 1:0, 2:3, 3:0, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-38.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 822-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAEKIA010000014.1 Schaalia cardiffensis strain CCUG 44997 Scaffold14, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 821 29 96.6 32 ............................T TTCGGTGATCGCGTCACCGTAGGCAGGCCAGA 760 29 96.6 32 ............................G CCGGCGTCTTCGATCCCGGCGGCGAGCCTGTG 699 29 100.0 32 ............................. CCGGCGCGGCGCATGCCGACGGTCGTTGTGGC 638 29 96.6 32 ............................G CCCTTCGGGCGTGGTGTGACCATAGCGGCGCG 577 29 100.0 32 ............................. AGGCGTTCGTGAAGGCGCTGTTCGGAAACTGA 516 29 100.0 32 ............................. AAAGACCGGCCCTGGACTCCCGTCGCGGCGCG 455 29 96.6 32 ............................G ACTACGCCGATGACATAGCCGATTTGGCTGAC 394 29 96.6 32 ............................T ATTTGACGCGACTTTCCCAATCGACTGTCACG 333 29 96.6 32 ............................G CCCTTCGGGCGTGGTGTGACCATAGCGGCGCG 272 29 100.0 32 ............................. AGGCGTTCGTGAAGGCGCTGTTCGGAAACTGA 211 29 100.0 32 ............................. AAAGACCGGCCCTGGACTCCCGTCGCGGCGCG 150 29 96.6 32 ............................G ACTACGCCGATGACATAGCCGATTTGGCTGAC 89 29 96.6 32 ............................T ATTTGACGCGACTTTCCCAATCGACTGTCACG 28 28 96.6 0 ............................- | ========== ====== ====== ====== ============================= ================================ ================== 14 29 97.8 32 GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Left flank : TCGCTGACCTGAGACTCTGGGACGACCAAGGCAGTCCTGTGCTTGCGGGCGTCTCATACGAGGAGCACTGACTCTCAATGGTTGTCGTGGTGCTTTCGGTTGTTCCTGATTCACTGCGCGGGCACGTCACTCGGTGGTTGCTTGAAATATCTCCTGGAGTCTTCGTCGGGAACCTGAACGCACGCGTGCGGGAACGTTTGTGGACAGTGATCCAGGAGAACATTGGCAGCGGACGGGCGATTATGGTCTTTCATGCGTCGAATGAGCAGAGACTGTCGTTTCTGACCTTGGGTGATCCATGGGTGCCGACCGATTTTGAGGGCCTCACCCTCATGGTCCGTCCGGGTGGATATGACGATGAGAACGCGCCGGAACAACGGTCAGATCGAGGTGACGGACACCGTCGTCCCGGTATGAGCAACTTCGAGAAACGACGACGGGCGCGGCGAGGATTCCCAAGAACGGATCGACAAACGCTCTAAAATCGCAGATCATTAAGT # Right flank : C # Questionable array : NO Score: 5.71 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGAGCGGGGATGAGCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [4,3] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGTGAGCGGGGATGAGCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [0.0-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.87 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //