Array 1 5969-7828 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSWE01000040.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5857 NODE_40_length_37630_cov_64.283551, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5969 29 100.0 32 ............................. CAGTTCGGTTACGTTTTTGACGTTATCGACAT 6030 29 100.0 32 ............................. TGATTTTTTATTACCACGGTGTGCCTTTTGGA 6091 29 100.0 32 ............................. GCCATTATTCGTTACGCAGACACGTTTGACCG 6152 29 100.0 32 ............................. ATCCCCGAGCTACCGCCAGGGCTTATTGATGT 6213 29 100.0 32 ............................. CCACTGCGGCCCCATGCTGGCCGGGCGGCATT 6274 29 100.0 32 ............................. TTTGTCGAGAGATGGAATACCGGTGCTCATTC 6335 29 96.6 32 ..........................A.. GGGTTTTAAATGTCTAATTTACGTGAAGTAGC 6396 29 100.0 32 ............................. AGTGCCTACAAGGTATTCACCGAAGGAGAGAC 6457 29 100.0 32 ............................. GCGTGCGCCGGGATATTGCGCCGCGCCGAGAA 6518 29 100.0 32 ............................. CGAGGCGGCATCAAAGACGACGAAACGCCATG 6579 29 100.0 32 ............................. TCAAATCGGTAAACGAAGAAAAGCGGGAAATC 6640 29 100.0 32 ............................. AACTCGCCAAATGGGAAGCGCACGTTGAGAGC 6701 29 100.0 32 ............................. AATTACAGGTGCTTGATGGAAAGTTACTGGAA 6762 29 100.0 32 ............................. CCCATCACCAGAAACATGAAACCGTCTTTGGT 6823 29 100.0 32 ............................. CCAAAAACATTGAGTGCTTCTTGTACGTTCAT 6884 29 100.0 32 ............................. GCGTCGCGGCGTGGTTTTAACTGGCTGCGGGG 6945 29 100.0 32 ............................. GTGGAGTTGAGGGTCAATAACAAGACCTACGC 7006 29 100.0 32 ............................. GAATGCTGGTTTCAACCTTGCTGGCAGCAACA 7067 29 100.0 32 ............................. TCCCCCCGGAGGCTGTACCAAAAATCGTAGAA 7128 29 100.0 32 ............................. ATTGTATATCTTGTTGAGTTTGAAGGGTGAAA 7189 29 100.0 32 ............................. ATGGCTGGGTAGTGGAGTAATCATTATGTGCG 7250 29 100.0 32 ............................. TGAATACCATTTTCCCGACAGAATAATTTAAA 7311 29 100.0 32 ............................. CCTGACGCCAAAGGGAACGTGAAAGTGTCTAC 7372 29 100.0 32 ............................. TTTAATCGCAGTTTTAAATGTTGCCTGCGCAT 7433 29 100.0 32 ............................. CCTTCGATTTAACAGGCTGGACAATCACGACA 7494 29 100.0 32 ............................. TTAAGAGGAGATTATTTGTGGCTAAAAATTAC 7555 29 100.0 32 ............................. ATCGCGCAGAACTGGCGTAATAGTCAGGAAGC 7616 29 100.0 32 ............................. CCGCCCAGAGAGGTCGCCACCTATACGGCAGT 7677 29 100.0 32 ............................. TTGGGGTTAATTGGGCAAATTGAATCAGGAAC 7738 29 100.0 32 ............................. TTGGGTTAATCCCACTGCCGGAAAGCTCGTAA 7799 29 96.6 0 ............T................ | A [7826] ========== ====== ====== ====== ============================= ================================ ================== 31 29 99.8 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCATTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : GTTTCACCAGCTTATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATTCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGATGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCGTCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGTTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 5442-7421 **** Predicted by CRISPRDetect 2.4 *** >NZ_SSWE01000047.1 Salmonella enterica subsp. enterica serovar Goldcoast strain Sal-5857 NODE_47_length_17931_cov_56.449450, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 5442 29 100.0 32 ............................. CCGTCCGGAGCAGGCGCTAGTTCTTCCAGTGA 5503 29 100.0 32 ............................. GGGGATTATCTGACAGCTATAGGGATTCGGGC 5564 29 100.0 32 ............................. AAAACATCGACTCATAGAATTTGGAGGAGTGC 5625 29 100.0 32 ............................. GCGGCTCTATTGTGCACGTGCTGGCGCTTACG 5686 29 100.0 32 ............................. GCGGGGCGGTTATTATTGTTACCCGTTTTCCG 5747 29 100.0 32 ............................. TACGATTCTGGGGAAGGTGAATGCGCAGAATA 5808 29 100.0 32 ............................. CTGGTGGGGCACTTCTGATATGAGAAGAGGGA 5869 29 100.0 32 ............................. GCTAGTGAGCGGGTTTCATGCGTGACCGTAGA 5930 29 96.6 32 ............................A TATTCCGTGCGCCCGTCACTGGTCGTGTACTC 5991 29 100.0 32 ............................. GCGATGGGACTGAACGGCGATCTGATTACGTG 6052 29 100.0 32 ............................. TTAAGCCCCCGGCATTCGGCTATGCCTATTCA 6113 29 100.0 32 ............................. CTGACACCTACGACCCGAGTGATGATATCGAA 6174 29 100.0 32 ............................. TTAAACGTAAAACCAGTGATAACGGCGCTTAT 6235 29 100.0 32 ............................. TAATTAAAATGACCTCATCAGAATTTAGCGGT 6296 29 100.0 32 ............................. ACCAGCAGCACTGTTATCGCTATCAGCAAAAA 6357 29 100.0 32 ............................. CGCGCGACGGGTAAGACCTGGGAAGAGACGAT 6418 29 100.0 32 ............................. CCCGCGTTTTGCGTCAGCATATAGCCAATACG 6479 29 100.0 32 ............................. ATAAATCAATGCTTTTTACCTGTTTTTATTGA 6540 29 100.0 32 ............................. GCAATATCAACTACATCCCCTATTATTCCCTG 6601 29 100.0 32 ............................. CAGTGCGGCAGCGCGCAATCGAGACACGCCAT 6662 29 100.0 32 ............................. GGTGATCGCTTTTTTCGTTATGTCGCGCAAAT 6723 29 100.0 32 ............................. CCACACAAAAGCGCATCGGGGACGTTTCTAGG 6784 29 100.0 32 ............................. AGCAACTGGCCGCGCAGAAAGCCGAGCAGGAA 6845 29 100.0 32 ............................. CACTCGATAAGGATGAAAATACTGTATATGAA 6906 29 100.0 32 ............................. GAATCCCGATTCTCGGTGTTGGCGCCATCTAT 6967 29 100.0 32 ............................. ATGCCGTACATAGTCCCCATATGGTTTGTGAT 7028 29 100.0 32 ............................. AGAATGATTTATCAGAGCATTTTGATAGTAAT 7089 29 100.0 32 ............................. GCGCGTCAGCGTGGATTAACTCAACAGCGCTC 7150 29 100.0 32 ............................. GAGTTTGGGGGCACTATGAAGGGATCGATGCT 7211 29 96.6 32 ............T................ ACGTTTTGCGAGCCATCAGAAACCTTAAATGC 7272 29 100.0 32 ............................. AAGGTTAGCGTTGTCATTGATCTGGTCGGCAA 7333 29 100.0 32 ............................. AGCGGCTAAACCTGCCGGTTATCGCTGAGCAG 7394 28 93.1 0 ............T..........-..... | ========== ====== ====== ====== ============================= ================================ ================== 33 29 99.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCTCTATCAATTTTACGGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAATAGTTTATAAACAACAATATACGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCTGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGCCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGCGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTACCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //