Array 1 88338-90196 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXDP01000009.1 Salmonella enterica strain BCW_2435 NODE_9_length_214223_cov_0.358269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 88338 29 100.0 32 ............................. TTTGCCGATCCCCTTCCAGACCACCCTTTACA 88399 29 100.0 32 ............................. TGCAGAGTTGTATCTTACCCTGTTTACGTTTC 88460 29 100.0 32 ............................. TTATCCCAATATATTTCGCTATCAGTTACATC 88521 29 100.0 32 ............................. GCTCATTAAATAACTATATAACCCCCGGACTC 88582 29 100.0 32 ............................. TTCCAGAACCGTTTGACTTACTGTGGCCATTA 88643 29 100.0 32 ............................. GATCGGGTGGTGCCGGTGGGCCATGTGGCGCT 88704 29 100.0 32 ............................. GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA 88765 29 100.0 32 ............................. CTCCAGCGCTCGAATTTATTTGAGGCCACCAC 88826 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 88887 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 88948 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 89009 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 89070 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 89131 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 89192 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 89253 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 89314 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 89375 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 89436 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 89497 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 89558 29 100.0 32 ............................. CCCCGATAGAGACGCTTCTGTAGTCACTGGCA 89619 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 89681 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 89742 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 89803 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 89864 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 89925 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 89986 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 90047 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 90108 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 90169 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 31 29 98.6 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 106329-107805 **** Predicted by CRISPRDetect 2.4 *** >NZ_MXDP01000009.1 Salmonella enterica strain BCW_2435 NODE_9_length_214223_cov_0.358269, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 106329 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 106390 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 106452 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 106513 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 106574 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 106635 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 106696 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 106757 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 106818 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 106879 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 106940 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 107001 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 107062 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 107124 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 107227 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 107288 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 107349 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 107410 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 107471 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 107532 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 107593 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 107654 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 107715 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 107776 29 96.6 0 A............................ | A [107802] ========== ====== ====== ====== ============================= ========================================================================== ================== 24 29 99.6 34 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.11, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //