Array 1 939971-940251 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049945.1 Streptomyces koyangensis strain SCSIO 5802 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================= ================== 939971 29 96.6 49 ..T.......................... ATCCTTGAGCCCAGCCAACGCCTGACTCCCCCTCCAAGCCCGGCCGGCA C,A [939973,939979] 940051 29 96.6 34 ...T......................... GTCTTTGAGCCCGGCCGGACCACCGGACCCCAGC 940114 29 100.0 34 ............................. ATCCTTGAGCCCGGCCGGACCACCGGACCCCAGC 940177 29 100.0 17 ............................. ACAGCCACAGCCACAGC 940223 29 69.0 0 ..CC.......G...AA...AAC.G.... | ========== ====== ====== ====== ============================= ================================================= ================== 5 29 92.4 34 CAAACCCAGCCCGGCCGGCGCTTGAGGCC # Left flank : TGGCCTACAGCCCGGCACCCGGCCGCACCGAGCTGGGCCAGGTCCTCGGCGCCGAGCAGGAGGGCCTGCGGCTGCGCTGCGCGGGCGGCGAGGTCCTGGTCGCCCGGGACCGGGTCGCCGCCACCCTCCGCCACGGCTGGGCGGTCACCGCCCACCAGGCGGTCACCCTGCGCGCCCCGGCCGCCGTCGTGGTCGTCCCCGGCGACGCAGGCCCGACCCTGACCCGCGACTGGCTCTACACCGCCTTCGCCCGCGCGGATCGCCACCTCTCCGTCGTCCAAGGCGTAGGCCCCACCCTCGCCACCGCCATCGCAGAACACCCGGCCAAGCCACGCACCACCCGCCTCCCCCTCCTCCTCAAGCCCCAGCTCCCGGCTCCGGCCACAACCTGACAAGCACCCCCACCCGAAGGCGAACAGCCCACCCACACAAGCCGGGCAAGCACCACCCGAGCCCGGCCGGTCCGTCCAGACCGGCAGGCGCTACCCAAGCCCCGCCGG # Right flank : CGGACCCCGAAGGACCCAGCCCCGTCGCGGGCAAGCGCGTCAGATGCGCCCCCGCCGCTCCTGATACCCACCCAGCCCCTCGGCGGCATCCTCGTCGATGTCCATCACATCGTCGAGCTCCCCGTCGTCGGAGCCGTCATCCGGGTCCTCGTCGAACACGGCACTCATGTCGAAGCGGCAGACGACCAGCTCCGGATCGGCGTCCTCGAAGGGCGCGTCGAGCCACTCCCCGGGCTCGGCAGGCTCCTCGGCAGCCACCACCCACAGGGTGGAATCCCCCTCCTCCAGCCCGAACTCCTTGTGCCGGGAGGCGACCTCGTCCGCCTCGTACTCGCCGAACAGGACGCCGAGGGCGGCGTGCACACTGTCGCCGACCACACCCTGGGTGCCCGCTCCCGAGCCGGGCGGAGCGGCGGCCCCGCCCCGGTCGTGGTCGGCGATGCGCTGCGCCTGGGAGAGCAGCCGCCGGGGTTCGGCGACCGCGTAGTCGCGGCGGATGA # Questionable array : NO Score: 2.52 # Score Detail : 1:0, 2:0, 3:0, 4:0.91, 5:0, 6:0.25, 7:-0.04, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAAACCCAGCCCGGCCGGCGCTTGAGGCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.40,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [6-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [21.7-23.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 2048602-2048085 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049945.1 Streptomyces koyangensis strain SCSIO 5802 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 2048601 29 100.0 32 ............................. TACGCCCGCCCCGAGGGCGGCACCGTCACCGA 2048540 29 100.0 32 ............................. GGCTGGTGACAGCGCCCACTCTGCACAGCCCA 2048479 29 100.0 32 ............................. AGCCACCGTGGCTGGGCACCCGCCTGGTCTCC 2048418 29 100.0 32 ............................. CAGCCGGTTGACCGGGCGCTCCGAGGTCAAGG 2048357 29 100.0 32 ............................. GCGACGGTGGTGACCATGACCGGCACGGCGGC 2048296 29 100.0 32 ............................. CAAGTGGTCGATGTCCAGGCCGCGGGCCCCCT 2048235 29 100.0 32 ............................. GCCGGGCCCGAGGAGATCGAGGCCGCCATTGC 2048174 29 100.0 32 ............................. TTCGGGCCCGACCATCCGCACAGCTCGCAGAG 2048113 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 9 29 100.0 32 GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : GAACACGGCCCCACCCGACACGCTGTTCCACACCCCGGCACCCACCCCCGCGTCGTCCCCGTCCACCACAGAACCCCTCCCCGTAGACCGGTTTGCCGCTGCGGGTCACCTTAGGGGACGGGGGGTTGGGCGTCTTGGGGTTGAGGGGGCGGGGTGGCGTGGGGGTCCCTTATGGGGGTGGGGCTTCGGGAGTGTGGACAAGGGGCGTTCGGGTGCGTTCGGGTGGGACGCCGAGTGATTCGGGGAGGAGGGGCGTGGCGGGGGTGGAGTTGACGCGGGGTGTTGCCCTGTTCCGATCCGCAGGAGCCATTGGGCGAGCGGGGCCGGCGGTTGGGGGCTGGGCTTGAGAAGCCGGGGTCAGGTCGGGGGGGACTGGGGGAGGATGAGCGGGGCTGATGGATCGGGAGGGGGTTGGTATGCGGCTTACGCCTGAAAGGTCGCAATCGGTGAAGCTTGCAGGGATGGGTGGTGGCGCCGGGTAAAGGTGCAGGTCATGGAGA # Right flank : TTGTCGAACTTGCGCAACGCCAGCCCCCAGCCGACACACGCCCCCAGCCCCCTCACGGCTCACAAACCCCACCCTCCACAGCCGCCCCCTCCGCCCCCGCGAAAAACCCCACAACCCGCCCCGCACACCCCCCACCAGCCATCCCCCCATGCTCCCCGTCCCCCACCACCAACAACGTCCCCCCAGTCCGCGCCCGCATCGCCCGAGCCCAAGGCAACGGCGTGATCACCTCGTCCCGATGGGCCACCAGCAGCAAGGGCCCGCCCGCCCGGCCCGGTTCCACAGGTGGCCGCTCCGGAGTGGGCAAGCCCGCGCACGTGCTGGTCCCCGGGACCTCGCCGCTGCCCGGGAACATCGGGCGGGTCGCGCCCAGTACCGGGTAGGCGGTGCGGCGTTCGCCGTAGGCCGACCACTGTTCGGCGAACGAGGCGGCGTGCGTCACCTGGGAGCAGAGCAGCGCGGTGCCTGCGAAAGGGGCGACCAGGGGTGGCGCGGCGGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGCTCCCCGCGCGTGCGGGGCTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [30.0-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 3 3985356-3984717 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049945.1 Streptomyces koyangensis strain SCSIO 5802 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =========================== ================================== ================== 3985355 27 100.0 34 ........................... CGAACCGCATCGGCATGTCCGTCACCGACCCCGA 3985294 27 100.0 34 ........................... CCGACATCGTCAAGGCCCTCGGGGAAGAGGCGGG 3985233 27 100.0 34 ........................... CCGCGGGTGGCCGGCACTCGGGCGGGGTCGACGG 3985172 27 100.0 34 ........................... CCAGTCAACCGCTGAAGACTTCAAAGCTAAAGGA 3985111 27 100.0 34 ........................... CCGCCGCGATGCTCGGCCGCCTCAACAAGCTGGC 3985050 27 96.3 34 ...T....................... CCGACGGCGGCCGGATCTCCTTCACCGCCGACGA 3984989 27 92.6 34 ...G......G................ CCAGGAACTCAGCCACCGGCCTTGCTAGGTCGCC 3984928 27 96.3 34 ...G....................... CCGGCAGCCTTCACACGTACGGCACCGTGGCCGC 3984867 27 85.2 34 ...G.A..........G.C........ CCAAGGCGGTCGTCCCGGACCAGGCGGCGCGGGT 3984806 27 100.0 34 ........................... CCGTGACCGGCCTCGGCGTGCAGATCGCCGTCGG 3984745 27 100.0 0 ........................... | AG [3984719] ========== ====== ====== ====== =========================== ================================== ================== 11 27 97.3 34 CTGCTCCCCGCGCGTGCGGGGTTGGTC # Left flank : GGGCGGTACGTGGACGACGGCCTGGCGATGAGCTTGCTCCGGGCGATGGACATGCCCCTGTCCCCGCGCGAGGTGCGGGTGCTGAGCAGGGCCGCACAGGGGGATTCGGTGGCGGAGATCGCGCGGGGGTTGTGCCTGTCGCACGGGACGGTGCGGAATTACATCGCTTCGGCTACGCGGAAGGTGGGGGCCAGGAATCGGGTGGACGCGATTCGGATCAGTCGGGCTGCGGGGTGGGTTTGAGGGGGGGGTGGTGGGGGGTTGGGTGGGGTGGGTTTGGGGCTCCGCGGGTGGGGTGGGGTCGGGTGAGACTGCGGAGTGGGGTTGAGGTGTGAGTGGCTGGGAGGGAGGCTTCGCGGGGGGCCTGTCGGGTTCAATGGGGGGGGCGGGTGCTGGGCAGACACCGAGGAGGGGATATGAGGTATTCGCCCGCATTGCCGGGATCCTTGAAGCTTGCAGGAGAGAGTGACTGGGCTGGATGAAACCCCAGGTCAGCGAGA # Right flank : GCGCCAACCGTCAGCGCTCCTGAGCGTGTCCACCCCCCGCCCACGACGAGGTCGACGCGGTGCTCCGGCTCCCCACCGCCGAAGGCTCCCCCAACCCCGCCGCCAGTTCCCGATACAAGGCCGACTCCCGAAGCAGCGCGGCGTGGGTTCCCAGGTAGGGGGTCGCCCCGTCCAGAAGCAGGACGCGCTGCCCGGGACCAGGCGCCGGGAAGTGATGGCTCACCGTGATGACCGTGGCCGGGTGGGAAGCGAAGACAAGCTCTGTCGCAGCCCGCGCCCCCGCGTCCAGATGGGCCGTGGGCTCGTCCAAGAGCAGCAAAGGCGTAGGCGTCAGCCAAGCCCGGGCCAAGGCGATGCGGCGGCGTTCGGAAGGGGTGAGGTGGTCCGGGCGAAGAGGGCGGGCCGAGTCAGACGCGAGAGAGGCCAGGGCGAAGGTGTCGATGGCTTCCGTGATGCGGGGGGCCGGGGCGTCCGGGGTTAGGTAGGTGAGGTTGTCCCGA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGTTGGTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCGTGCGGGGTTGGTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [26.7-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,5.18 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 4 4961693-4961542 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049945.1 Streptomyces koyangensis strain SCSIO 5802 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 4961692 24 100.0 39 ........................ TCCCTGACCGGCAGGTCACATCGGACCGGCGCACAGACC 4961629 24 100.0 40 ........................ TCCTTGACCGCGAGGTCGGCACCGACCAGCACCCCTTGAT 4961565 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 3 24 100.0 40 CAGCCCGGCCGGCGCTTGAGGCCA # Left flank : CGCGGTGGCGACCGTACTGGCGCTGCTCGTCAGCCTGGTGACGACCTTCGCCACCTTCTTCCTCGGCCAGGCCCTGCTCGGGAACCTCTCCGCCTCCATCGGCGATCCCGGCGTCCTCCGGGCCGTGATCGGCGCGGCCCTCTACATGACCCTCATGGCCGTCTTCTCCATGGGCGTCGCCGCGATGCTCCGCTCCCCCATGCTCTCCCTCGGCATCCTCGTCCCCTTCTTCTTCCTCGTCTCCTCCATCCTCGGCGCCGTCTCCGCCACCGAGAAGATCGGCCGCTTCCTCCCCGACCAGGCCGGCTCCAAGATCATGCAGGTGGTGGCTCCGCTGGACGACGACACCCCCTACGGCCCGTGGGGCGGCCTCGGCATCATGGTCCTCTGGGTGATCGCCGCACTGGCCATCGGCTACGCCTTGCTCCGGCACCGGGACGCGTAGCCAGGCGGGTCCTGGCCGTCGGCCGGGCAGCCTCGAACGTCGGCCCGGCTACCAA # Right flank : CATCCCCAGCCCACCCCGGGAGGGAATTCGCGCTTGGCCGGAACCGAACGCCGGTGACTATCCTCCTTACGTTGACGGGGACAACCCCGGCAAGGAACTCTGTCGACGGGTGCGGGGAGCACATGATCGAGGCCATCGGCCTGACGAAGCGCTACGGCGCCAAAACCGCCGTGCACGACCTCTCCTTCCAGGTGAGGCCCGGCACGGTGACCGGCTTCCTGGGCCCGAACGGCTCGGGCAAGTCCACGACGATGCGCATGATCGTCGGCCTGGACGAGCCCACCAGCGGCCGCGTCACGATCGGCGGCCTCCCCTACCGCCAGGTCCCGAACGCCCCGCGCCAGGTCGGCGCCCTGCTCGACGCCAAGGCGGTGCACGGCGGCCGCTCGGCCCGCAACCACCTGCTCTGCCTCGCACAGCTCTCCGGCATCCCGCCCCGCCGGGTGGACGAGGTGCTGGGCGTGGTGGGGCTCCAGGAGGTGGCGCGCCACCGCTCGAAG # Questionable array : NO Score: 2.67 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGCCCGGCCGGCGCTTGAGGCCA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-1.20,-1.10] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [31.7-25.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 5 5472417-5472751 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP049945.1 Streptomyces koyangensis strain SCSIO 5802 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 5472417 30 96.7 31 .............................G CTCTGCGCTGCACAAAGCTATGTCAGCAGCT 5472478 30 96.7 31 .............................G CCCCTGCGGACGGGGAGACATGGGGACTCAT 5472539 30 100.0 31 .............................. ACGTCGAGCTGCGGGACCAGTACGTCCGTGA 5472600 30 100.0 32 .............................. GCGGCACCTGGTTCACCTCCCCCACCGGGTCG 5472662 30 96.7 31 .............................A TCGTGGACGCGGCCCGGCCCGGCGGCGCCAC 5472723 29 80.0 0 ..............C...AA..-C..G... | ========== ====== ====== ====== ============================== ================================ ================== 6 30 95.0 31 CTGCTCCCCGCGTGTGCGGGGGTGGACCCT # Left flank : GCGCGGGGGCCGCGAGCAAGGCCCGGGCTCACGGGGCCGGGCCGGGACCCCGTGTCAGCTTTACCCGGGGCTGTGCTCCGGTCGCCTTGCGGTTGTGGCGACTTGGCTGCGACGGGAACACTCCGTCCCGGCAAGCTTTATCTCGGCGGCACCTGGGGGCTGAGGGAGAGCCCGGCTGGCGGCGGGCTTGGGCGTCGGGTGTCCTTCTCGACTCCGCCACAGGTTCGGCTGGGCAGCTCACCTGTACGGAGACGGGTCGCGCCGGCTACGACCGGGCCCATCCCCGGTGCCCAAGGGATGCATGCTCCGGCCGTAGCGCCGGGGCTCGGTGCTCCTGCCTGCCGATGACTGGGATGGCCATGCGTGCAGTGCTCTGCGGGGAAAAGCCCGGCAGCGGGGGAGGGATGCGGACGGCGGAGGCTAGGGTGGCGGACATGGCGAAGTTGGCGTGGAACGTCGACTTGCCGAGGTGAAGACGCAGGTCACGCAGGTCAGGGAGA # Right flank : TCCCGGGCCCCAGCGCCCTGGCCACGAGGAGCCTCGCCCATGGCCCATGGCCCATGGCCCTTGAGCCCGCAGAGCCACGCCCGTAGCCCCGCCATGAGACGGAGCCGCGTCCTCGACCGACCTGAGCATCGACCGGGTAGGAAGTGGCGAACTGGGCGCCACCGGAGAGGACTTCTACGAAACGGGTCGGGGGCCTTCACTCACAGCGCCCTTCTCGCCGCCCATACGCGTAAGGCGCACGATGCGGTCCGCTGGACAAAAAACGCAGGACGAGCCCGTCGAGACTGTCCCCGGACCTTCGCCAGCCCCGGTCAGAAGCGTCTAGCCACCCGCTAGCCTCGCCCCCCGCCTCTCCGGCCAGCGGTCACGCAACGCCCATAAATACCTCTGCCACGTGCTCGCGGCAGGCAGCGCACCCGGAAGCTCCACCCTGCCCGGACCTGTCAAGCCGGAAGCACGCCCCTGGGGCAGCCCAGGCGAGGCCCCCGGCCAACCCTCGC # Questionable array : NO Score: 5.70 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGTGTGCGGGGGTGGACCCT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [1,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGTGCGCGGGGATGGACCCG with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-21.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //