Array 1 3470740-3471487 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032521.1 Alcaligenes faecalis strain J481 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 3470740 28 100.0 32 ............................ GTACAGACGCGCCAACAGGCACGTCAACAATA 3470800 28 100.0 32 ............................ TAGCCGCTCCGTCGGTGCGTTCGGTCCCTCAT 3470860 28 100.0 32 ............................ AGAGACTTGATCGTATGCTGCAGGCACAAACC 3470920 28 100.0 32 ............................ GGGGTTGATGTCAGCAGATTGACGCAATCAAA 3470980 28 100.0 32 ............................ CGAAATTGGCCGCGTGGCTCCGGACCAGGCGC 3471040 28 100.0 32 ............................ GTTAGCAAGGACTGGGGCGATCGCTCGTCTGT 3471100 28 100.0 32 ............................ CGAAATATTAAGTGTTCTTTCGTCTAGATTGT 3471160 28 100.0 32 ............................ ATCGAAACAAGGTGCCGGGCTCTGAGACGCGA 3471220 28 100.0 32 ............................ AAAGAGGAGGCCGCTGCGTTCCGTGAGACATT 3471280 28 100.0 32 ............................ TAGACGAGAAATACCCAGGCCGCGCACAGCCT 3471340 28 100.0 32 ............................ ATAGATCCCGGAATGGATCTAGACCCGTCGAC 3471400 28 92.9 32 ....................T.C..... AAGTATGGGCTGTGCTTTTTGCTAGGCGTTAA 3471460 28 67.9 0 ..G..GC..GTC...A....T.G..... | ========== ====== ====== ====== ============================ ================================ ================== 13 28 97.0 32 GTTTGCTGCCGAGTAGGCAGCTTAGAAA # Left flank : ACACTTAAATCGGGATGCCGCAGGGCGGCTTGGACATCACCGTGCCTGTGGACCAGCCACGCCCCACCACAGAAATCGGCATCCCACACCAAAGGTGGCCCCTGGCGAAGGCTGGCATAAGCCGGATAGGGAGACGCAAGATTGAGGTCGCCAAACATGACACTGTTTCCTGAAGATCAAAGCCAGCGCAGGCTAGCACTTGAGCCGGAAAGAGGCAGTCAGGAGATTGTGTCTATTAATTCTTTCAGGGTGTTTTGAGTTAATTAACGAGTTGTTTACCGTTTATGGCAACTGTTGGCGTTTTTTGTGTGACTGTTTTTTACAATAAACTTGATGAGCGAATTCGAGGTGATGGTCTTTTCTTTGCAGAAACCCTTTTTTTCTATGATTTAAAATTTTGTTTAAAATCAGATGCTTATTGGGTGGTGTGAAAAAAGGGTTTTAGTCGCAAAAAAAGCCATAAGATAGAGCCTGATTGGCGTTCAGGGATGAATGCTCTA # Right flank : AAGCTTCTGGGTTTGTATCGTGCGCAGATAAGGTTTGCTGCGATAGAGGCCGCTGAAAAGGTTTAAATTTCGGATGCCCAGCTAGCTTTTTGTCGTAGGCCATCGCCTATCTAATGGCAAGACCAGTGCTGGTAGCGGCCCTGCAGCAATGGCAGGCTAGGACTACCGCCCTAGTCTGCTATTTATTCCAACTAATCACCGGGCATCAGATGCTGCTGGCAGTCCATCATTACTTAGTTTTTCGGTTTTACGCTGCGGCAACTTCCCGTTCAAAATAAAGTATGCCAACAGACCAATCACCAGTCCCCAGAAGGCCCCGCCGATGCCAAATAGCGTGATGTTGGCGGCTGAGGCCAGGAAGGTGATTAACGCTGCTTCACGCGATTTGACGTCCGCCATGGCGCCGGCCAGGCTGCCACCAATGGTTCCCAGTAGCGCCAAGCCCGCCAGGGTGGTGATGAAGGTTGCGGGGAAGGCCATGAACACGGCGGCCAGCGTCA # Questionable array : NO Score: 6.11 # Score Detail : 1:0, 2:3, 3:0, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTGCTGCCGAGTAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGAGTAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-11] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3490185-3490693 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP032521.1 Alcaligenes faecalis strain J481 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3490185 28 100.0 32 ............................ TCTGACGCTAAAACCGCTGTTGGCCAGATCGC 3490245 28 100.0 32 ............................ AGGGTTACTTTCTTATTGAGGCCCACCCATTT 3490305 28 100.0 32 ............................ ATATCGACGTACATAGCTGCCAGCGGGTAACG 3490365 28 100.0 32 ............................ TATCAAGCCAAGGCCGTTGCTCTGACTATTCG 3490425 28 100.0 32 ............................ GTCAGAACTTCCTGACTGTCCTCGGTCACCCG 3490485 28 100.0 33 ............................ ATGCCGTGGTGTCTGTTGGGCTGGATGGCACTG 3490546 28 96.4 32 .................T.......... GTCCGCCTGGGTCTGTCGGTGATGTCACTGTA 3490606 28 100.0 32 ............................ ATCATCAAGGCGGGCTGGGTTGATTACCAGCA 3490666 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 99.6 32 GTTCGCTGCCGCATAGGCAGCTTAGAAA # Left flank : CAGAGTTGCAGAGCCTTGAGCAAACCCAGTGGTTACGTGGGATGCGTGATCATATTGATCTGAAAGAAGCGAGTCCTGTTCCGCAGGGGGCGACGTATCGAACCGTTTATCGCCGCCAGTTCAAAACCAATGTTGATCGGCTGCGTCGCAGGCGTATGAAGCGCCATGGTGAGACAGCAGATCAAGCTTTGGCGGCGATTCCTGAATGTGTTCAACAGCAGCCAAACTTGCCGTTTATACAGATGCGCAGCCAAAGTACCGCACAAACATTTTGTCTGTTCCTGGAAATGGGACCGGAGCAGCCGCTTGCAGCGGCTGGATGTTTCAATGCTTACGGGCTAAGTGCGCAGGCTAGCATTCCCTGGTTTTGACCCTAATTTTCAGTGGAAATAATTTTTCTTTTAAATCAATGGATTATGTTTTTGTCTAAAAAAAGGGTTTAATAGGTGAAAAAGTCTGAAAGTGCTGAGTATTCAGTGTTTTCAGGCTTTTTGCCTCTA # Right flank : ATTCAACCTTAAGGGCGTGAGCGTCACCATGGCGTTTGCTGTGTGCAATCTTCGCCTCTTATTGAGAATCGGCAGCAAAATCCATGTTCATTGAGCATGCCCGATTCAGCCTATATTGGTTCGTCCAAGCCTGCCGCGATAATTTTTACAAAATAAATGTCCGGAAAATGGGCTCTCAAACGTCTTTATAGGGAAGACCTGAAAAAGGATCTCTTTCCTTGCCCCCCCTGTTGCGCCGTTTTGCCAGGGCCCTAGGCCCGTTGTTAAGTCGCGTTGAGCCAGTGTTGGGGTGAGCAAGCCTTTTCCTTTTTGACCATTATTATTTTTTGATCACCTGCCCGCCATGAGCCGGGCGGGTGTAGATCCACGGGATTATGTATGAAGTCCAAAGCAGTGAAGCGTCGCTGGGCGTTCGCCCTGGTGGCGGTGCTGGTATTGGGGGCGCTGGCCGCACAGGCCGGGCGCTCGTCAGAGCAATTTGAAACGGTAGCCGTAGAGCA # Questionable array : NO Score: 6.24 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCTGCCGCATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCGCTGCCGCGTAGGCAGCTTAGAAA with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //