Array 1 572739-573568 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024596.1 Porphyromonas gingivalis strain KCOM 3131 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 572739 36 100.0 31 .................................... CGCTCAAAACGACTCAAGAAAAACAAATGAG 572806 36 100.0 30 .................................... ATTTTGGAACCATTTTTAGCGTTTTAATGA 572872 36 100.0 30 .................................... AAAGAGCGAGAGGAAGAAGAAGTTAAACAT 572938 36 100.0 30 .................................... AAGAGGAGAAAGCTTATCCCTGCTATCAAA 573004 36 100.0 31 .................................... CCTCTTTCCCAAATGAATATTCCTCTAGTTA 573071 36 100.0 30 .................................... CGACATATCCAACAAAGACCTTCAAGCCTT 573137 36 100.0 30 .................................... AGCCAAGAAAAAGTAATGACTATCAAACTT 573203 36 100.0 30 .................................... AGCCAAGAAAAAGTAATGACTATCAAACTT 573269 36 100.0 30 .................................... AGCCAAGAAAAAGTAATGACTATCAAACTT 573335 36 100.0 30 .................................... CGCGGCGTTTACATGGAATGTCATGTAAAT 573401 36 100.0 30 .................................... ATAATAGAAGAATTATCGAAGATATTTAGT 573467 36 100.0 30 .................................... AAGCCGTTGAGATTCCAGCTGTAACTTATA 573533 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =============================== ================== 13 36 100.0 30 GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Left flank : ATATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGCGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGGCAGCTCAAAAGGCCTTTAGCGGAGGTATAAATAAAGAGGCACCCACCGAGTTCTTGCAGGAACTCGGTGGGTGCCTCATCTATTCGAAGGGGTACGAAACGGCTCTCAGGCTCTACCGCTCATACAGCAGGTTTGTATCAGCCATACGCGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGAAAGAGAGGGATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAAAAAAGGAAAGCACTCCCCGACACAAATTCACCGAAGAGGGGAGCACCTCGTCCGCCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCAT # Right flank : CACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATATTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGTTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATGAATACTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGACCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAAATTCGTCCGTCAGTTCGGACAGGAATCCACGGATGCAGGCCGGCCTGAAATAATAGGTTTTCGCT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:52.78%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 2 939749-941026 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024596.1 Porphyromonas gingivalis strain KCOM 3131 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 939749 30 93.3 35 A..................G.......... AAGGCGGCGCAGCAAGCTCTCTCTATCCTGTTTTC 939814 30 100.0 35 .............................. AATGCGCTCCGAGGCCCTCCACCAGCTCCAGCTAC 939879 30 100.0 35 .............................. TTATTCTTCGCCGTGATCTCCGCTTCGGTCGCTTC 939944 30 100.0 34 .............................. TCCCATGAACACATCACTCTGCATGATCTGAGCA 940008 30 100.0 37 .............................. GTGGCAAGACGATAAAGTGGTACAAGCAGAACCCTGC 940075 30 100.0 37 .............................. AGGCAGCCGCCTGGCGAAACTTGCAGATACAGGTCGG 940142 30 100.0 34 .............................. ACACGGGTTATACGTAGAGCCTCTTCGAGATTTT 940206 30 100.0 36 .............................. CGAACATCAACCTGCCTGTGCGGACGAAAGAGATAA 940272 30 100.0 36 .............................. GATGGTCGTAGTAGGCATCATCAAGCGCATGTTCCC 940338 30 100.0 36 .............................. ACTCGATCGTGAACGGCTATATCATCCCCCTGCAGC 940404 30 100.0 36 .............................. AAGAAAAGGCCTCCGGCATTTTCTTCCTTATACGGA 940470 30 100.0 34 .............................. TATATAGAAGAGTCGAACGCCCGTCTGCTCGCTG 940534 30 100.0 36 .............................. AAAAGGATCGCGCAGAAAAAGAACTCGAGACTCGCA 940600 30 100.0 38 .............................. TGATGACATCTATATACATGAAGATGCAATTGCCAATT 940668 30 100.0 36 .............................. CAGCCCGTGGGCACCCGTCAAGGCCGAGCCCGGCGT 940734 30 100.0 36 .............................. CGTAACCGCCTCTGTAGACCGCTCCACGCAGTCGTT 940800 30 100.0 35 .............................. GCTCTGGACACGCTGACAAACGTCTTGAAATCGTT 940865 30 100.0 36 .............................. CTCCGCCAACGCCGTGGCCGGCACGCTCAACCAGTT 940931 30 100.0 36 .............................. ATGCCGGAGGCCTTTTCTTCGAGGTGGAGTATGCAA 940997 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 20 30 99.7 36 GTTTTAATTCCTGTATGGTACAATTGAAAT # Left flank : TCGGGAGATACCTCTTCCATCTTCAGCCCCAAGAATCGGGAAAAGGTGATTGAATCATTGATGCGCTCCTCCAGAGCACAATCACTGAGGTTGTACCATGTCTTCGGAAGCAACATCTTGAATAAGAGAATCACGTCATAAGCCGGGGCGCCGATGGCATTTTGTCGCTTCGTGTATTTCTTGTTGATCAGCGTCCTGATCGGACGCCAATCGATAAGCGTGTCAACCTGATTGAGGAAGTCGTTTTGTGCTTTGCGATAACGCTTTGAAAGGAGTGCGTCTGCAAATGTTACATGCTCATCGGTATTCTTGGATTGGTATGCCATGGGAGGAATATTATGCTGTTTTTAATGCTCAAATATACGAAATAACTCCCTATTATACAATGAATTAACAAGCAAAATACACACCAATCGCCGTGCAAAGGTCTCTATACCTAAAAAACAAGCCAAATAACCTCGAAACTAGTTGTTAGTTTTTGGGAGTAGTATAATGGATAC # Right flank : TCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAAAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAA # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTACAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA // Array 3 1812078-1815771 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP024596.1 Porphyromonas gingivalis strain KCOM 3131 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================================== =============================== ================== 1812078 46 100.0 31 .............................................. AATCAATCTGGAAGTAATAGACGAGACTCTA 1812155 46 100.0 30 .............................................. CACACCGAAGTTTTGTGTTAACTCCGTAAT 1812231 46 100.0 30 .............................................. CAACTTTTTGAAACAAACAAACTTTTCTCA 1812307 46 100.0 30 .............................................. GCTTGTCCGCCTCGTCAAAGACGAGCAACG 1812383 46 100.0 30 .............................................. GCCATGAAAATTGGCAAAGAGAGGGGAATG 1812459 46 100.0 30 .............................................. ATAAAAAGAGAGGTGCTCGGGCTGTATGCG 1812535 46 100.0 30 .............................................. CATTCCGAAGAGTTTGCCATCCTGAATGAT 1812611 46 100.0 30 .............................................. ACGCTTCCTTTTCAGCGCGAGGCACTCCTT 1812687 46 100.0 30 .............................................. AGACGGCCGCCGATACCGCGGCGTCTAATG 1812763 46 100.0 30 .............................................. CAAAAGAGTATGCTGCAACGCACCGCAATG 1812839 46 100.0 30 .............................................. CATTTCCCGCCACACGCGCTCGGCCGCCTG 1812915 46 100.0 30 .............................................. ACTGATGGTATTTATAGTTGCCATGCGCGC 1812991 46 100.0 30 .............................................. AAGGATATAAATACTTTGCACGTGTAAGTG 1813067 46 100.0 30 .............................................. CGCCCTCGTGCGCATAGAAAACCCGCTGCT 1813143 46 100.0 30 .............................................. GAGCTGCGGGTGGGTAAGGAGACGTATGTG 1813219 46 100.0 31 .............................................. ATCGAACCAACGCGGAATAACACTTCCTCCG 1813296 46 100.0 30 .............................................. AGGGGGAGAACGTATCTGTTATTTACCCGA 1813372 46 100.0 30 .............................................. AGACGCGGATGCTGCTGTCCGTGTCTGTGC 1813448 46 100.0 30 .............................................. ATACCTCCGTTCAGCACATCTTCCTGTGCC 1813524 46 100.0 30 .............................................. GAAGCGGATCAGCGGAAAAGCGGACATGTA 1813600 46 100.0 30 .............................................. TGCGATATAATATTCAAAGCATATCAGATG 1813676 46 100.0 30 .............................................. GCAAGCTGCTGTCGGTGGGCTCGCTGGTGA 1813752 46 100.0 30 .............................................. ACTTGAATTTTTTCAGCTCTCTACTGTATA 1813828 46 100.0 30 .............................................. TAGAGATCCGTCTTTTTTGACAACGTCGCT 1813904 46 100.0 30 .............................................. CTAACACCTTGGCAGCATCGGCAGATTGTT 1813980 46 100.0 30 .............................................. CTTGTTTGCTGTTGTTCTTTCTTTACACTG 1814056 46 100.0 30 .............................................. TCCTACAGTTCGGTGTTTTCTTCGTGAACT 1814132 46 100.0 30 .............................................. CGGAGATAACGATCCCCGCACCGACGGAGA 1814208 46 100.0 30 .............................................. TTTCGTTCTTTCTATTTTCAAGATACGAAC 1814284 46 100.0 30 .............................................. TTTCTGACAATTTGATATTGTCGATGGTCA 1814360 46 100.0 30 .............................................. CTCTCGCATCGACGAATTCCGTCTCATGCG 1814436 46 100.0 30 .............................................. TCTTCTGCAGCTCGAAGTCGTTAGCCTTCA 1814512 46 100.0 30 .............................................. CAAAACCAAGGGCGGTGAGAACCGCCATGA 1814588 46 100.0 30 .............................................. CGCCCTCAGCTTCAGAACAAGTACCCGTCA 1814664 46 100.0 30 .............................................. TGATTATTGCTTCACTCCAAATACTTCGAG 1814740 46 100.0 29 .............................................. CTTTCACAAGACGAGGTAAAGCAGCTTGA 1814815 46 100.0 30 .............................................. ATGACAACTGCAGAAAGATTTAGAGAGCTT 1814891 46 100.0 30 .............................................. TTCCTATCGGTTTAGGAGTAGAAGGATTCA 1814967 46 100.0 30 .............................................. CTTCGGCTGAATCTGTTGGAACACTTGAGT 1815043 46 100.0 30 .............................................. TCTTTGCTTTTTCGCAAGAAGCTCTCAAGT 1815119 46 100.0 30 .............................................. CTTTGTTTGTTTCTAATTTAGATACTTCAA 1815195 46 100.0 30 .............................................. CATTGACCGAGCTTTAAGATGTCCTTGCGT 1815271 46 100.0 30 .............................................. CCGTTGGGCACGATAAAAATATAAGGTTAT 1815347 46 100.0 30 .............................................. TGCAGGTGAGGAATTACAACCCTCGTATAA 1815423 46 100.0 30 .............................................. AAAGCTCTTGGTAAGGAGGACTTGTTGCCT 1815499 46 100.0 29 .............................................. GGAGTTCAAGAAAATGGTTCGTGATGCGA 1815574 46 100.0 30 .............................................. GTTTATATAGAGCTGCTTCAAATACTGTTT 1815650 46 100.0 30 .............................................. AATCTAGTTTTCTCAAAATTCAAAGTTCTC 1815726 46 100.0 0 .............................................. | ========== ====== ====== ====== ============================================== =============================== ================== 49 46 100.0 30 ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC # Left flank : AAATGAAAACGATTTGTATACAAATTGAAAACGCTTTATATACAGATCGCTGTACGGCTTGTTTTAAGTGGAATTTCGATCTATGGCAGTTCCTTTTCCCTCCACTTTTACCTTGCTTTTCTCCTCTCTACAGATACTTATTTGGAATCGTTCCAAACTCGTCTTCGTTGTTGAAAACTTTTTTGGCGCATGATTTTTGAGCAGATTATTATTTTCGTGGTCTCCCTTTTTTCACAGGGAATAGCTTTCAGATTTAGTAATGTTGTTGCAACGCACAGCCGGCGAAATCTTTTATGATTAGTTTCTTGAGCTCTTGCAGATTCATAAACTTTGTTTATCTCTGTGGCAGATAAAGCTGGTTGGCGATGTGAGTACGGGGGAGTGTTATCCTGTTTCCTTGCCGATCAGCCTTTATTTTTTTCGGGGAATGGCCCTTGTACAAAGTACGGCTCCTCCCATACCCTTCCCCCTTTGCTGATAACCTCAAACCCGAATCGGTA # Right flank : CAGAATCCCCGTAATCACCTGTAATACAGGACATGGAGGGTGGTTGTGAGTAAGAAAAAAACAACTGTGCGTAACTGAAAAGCCGAGAGAAATCTCGGCTTTTTAATTTCTATGCCCCAGACGAAAAGCACTAATTCCACAAAAGATGATAGAATATATTTAAAAAAGTTCAAGCTGGAGGGGTGGCTGATAATACTCTCTTCCTTTCCCACAAATGATCTCCATAGCTGAAAATTGTTTGTCTGTGATTGTCATCAAACCTATTTTGCCCTTTTCAGGAATAGCAGAACGGACCCGTCGGCAATGTGTTTCTGCATTCTCTCTACTTGCACAGTGTCTGATATAGATAGAAAATTGGAACATCTCGAAACCATCTTTAATCAGATTTTTCCGAAAGATTGCTGCACGTTTCCTGTCGGCTGCAGTTTCCGTAGGTAGATCGAAGAATACCATTACCCACATACTTCTATAGGCTGAATATCTGGATCTGTAATGACTCA # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTGGGAATAGCTTTCAGATTTAGTATTTTTGTTGCAACGCACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:60.87%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.70,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [48.3-58.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0.27 Confidence: LOW] # Array family : NA //