Array 1 932908-929037 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045687.1 Sulfolobus sp. E5-1-F chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== =============================================== ================== 932907 24 100.0 41 ........................ TCAGTATCCTCACATAAACCAGAACAAGACCATTCAAAAGT 932842 24 100.0 40 ........................ CTTTCGTGGCAAAGAGGGTATAAAGGCGCATACTATCTGT 932778 24 100.0 38 ........................ CAAAGAGGCTATTATCATTTTGCGGCATACATAGGAGA 932716 24 100.0 40 ........................ GATATTAGGGTCATATCCCCAACCCCTTTTCTTTCTCATT 932652 24 100.0 39 ........................ TTTCGTGACAATGCATTTGACTACGTCTTTCTGTTTGAA 932589 24 100.0 41 ........................ TACACTGTAGGACCTAATGATATATTAGTAGCTAATGTTTA 932524 24 100.0 39 ........................ GCTACGTTTTCAGAAACTTGGGATTCAGTTACGTTAAGT 932461 24 100.0 41 ........................ CGTAATGATGCTGTTCCACCATTCACCACCGCATATGCCAC 932396 24 100.0 39 ........................ CTTCTGCCTAACGCCGCTTGAACTTGCTCTAAAATTTGT 932333 24 100.0 37 ........................ TCCTATCGAAGCTCCAATTTCAGTAAATCCAGTGGCA 932272 24 100.0 40 ........................ GATACTCGTAAACTTCTCTCGCTATATCATCTTTTTCGAT 932208 24 100.0 39 ........................ ATTATTAATATATAAATTTCAAGATATAGAGGACGTTAA 932145 24 100.0 39 ........................ TGTATGGATTGTCACAAGCTATGCAGAAGAAGCTGAATG 932082 24 100.0 38 ........................ CTTATGGCATATCGCACAAGTTGCTCTTCGGCCTTTGG 932020 24 100.0 40 ........................ ATCTGATTATACAACGGCAAATTATCTTTCAAAGAGATAT 931956 24 100.0 40 ........................ TCGATAAAGATACTATTTACTAACCTAGTTAGTTTGTTAA 931892 24 100.0 41 ........................ AGAACATATATGCGTGGGCAACAGGCCCATGCCAGATTTAC 931827 24 100.0 41 ........................ TTGAGAAGTGCGTTCTTTGCGTTTTGCGAATACTGATACGC 931762 24 100.0 41 ........................ TAACAAAATCGTTGTTGCAACCCATCACTGCATATAAATTG 931697 24 100.0 41 ........................ AGTGAGAACGATAACTAGGGATAAACATGGCAACACTACAG 931632 24 100.0 40 ........................ ATTCCTGTGAGCCCAGCCAATATTCCACGAACAATGCCTT 931568 24 100.0 39 ........................ AAATGAGTATTTGGAATCTTTGTTCCTGAAGGACTTGAC 931505 24 100.0 43 ........................ TCCTCAGTTTATGGCTGGACAAAAGCAAGTGCCGAATTACTCT 931438 24 100.0 41 ........................ TGGTAATCAGCGGTCTCGTAATAGGTGGGGTTATTGCACCA 931373 24 100.0 40 ........................ CTTCTTCTTCGGGTACTTGTTCTTCTGCCGGTTCATTTTT 931309 24 100.0 39 ........................ TATCAGGCCGTTATTGGGTACTGCATTTATTTGCAATAC 931246 24 100.0 37 ........................ ACAGTTGCGAATTTTTCACCACACCTAGTGCAATATT 931185 24 100.0 39 ........................ TACTCAATTATTTTCACTGTTCTTCCCCCTTAGCTTTTT 931122 24 100.0 40 ........................ TTATCGCCATTAGAGTACTACGAGAAAACGTATGAGGTCG 931058 24 100.0 41 ........................ TTTGCTTCATCCACGCCCGCAACGGCAACGACAAAACGTAG 930993 24 100.0 40 ........................ TTCACTAAGCTGAAGGAACCATGGCGTTTCTTCATATTCT 930929 24 100.0 39 ........................ TTTGAAAGCCACAACTTGTCGGTAGTTGTTCTGTCGAAA 930866 24 100.0 40 ........................ ACTTTCAACTGCTTTTTGTGGGCTTGGTACCCATACTTGT 930802 24 100.0 39 ........................ ACTTTGCTCTCATCTAACACTTTTGCACAGAATAGCGAG 930739 24 100.0 41 ........................ TCAAGATAGGTGCTAGCAATGCCATCTAATACTGATGCTAT 930674 24 100.0 41 ........................ GAAACTGAAGTTGTTCCAACTCCTAACTCTTCGAACGGCAC 930609 24 100.0 40 ........................ TAATATTATCCAGCTGGCCTTCAATTTCCTTTATTGCCAA 930545 24 100.0 43 ........................ AAGTTTCATGGAATAAACTAGGTCCTAACGGAACTTTTGCCGT 930478 24 100.0 40 ........................ ATTTAGATGTCTCTGCAACTTAAGGGCGAAACCTTGGTAA 930414 24 100.0 40 ........................ GTTCATTTTCAGACGCTGTTTCCTCCTCTTTTTCTGTTTC 930350 24 100.0 41 ........................ GCAACTCATTCAATTTTGAGACTTTCTCTTCCAATTCCTTT 930285 24 100.0 44 ........................ GCAAAAAACAACACTACTATCTTGACTTGAAGCTAGAGCGTAAT 930217 24 100.0 39 ........................ AATGTTATGCTGACTCCGACCAAGCTTACAACGCCACAA 930154 24 100.0 39 ........................ AGATATACTCCTACAATTACTCCGAGACTGACCAATATT 930091 24 100.0 40 ........................ AAGAAAGCGTCTAACCCTGTACGATCATCGTTACTTCCTT 930027 24 100.0 39 ........................ GAATAAGTTAACGGAGCAGTTTGTACAATACCAGACGGC 929964 24 100.0 40 ........................ ACTTCCTTACAAATAAACAATCCTAACAAAGCAAATGTTA 929900 24 100.0 40 ........................ CTTACTTTCTACTTTCATATCATATACATTACTCCAGCAA 929836 24 100.0 41 ........................ ATCTGAATTAGCTGGTTGTAAATCTCTGAGAAAAGGCTTTG 929771 24 100.0 42 ........................ TTTAGCATTAATCGTTTGCCTTTGATGCTATTGTACCATTCT 929705 24 100.0 41 ........................ ATTATAAGTAAAATCATACCTAAGTGTTTAAAATTCATTTC 929640 24 100.0 40 ........................ AACATCAAACGCCTTGGGCCACAGCTAAAAGGTGGTGAAG 929576 24 100.0 39 ........................ CTTCCAATGACTCAATCTCCCCGACAAGTGCACTATTTT 929513 24 100.0 40 ........................ GGTATAATTTCAGCTCTCGATATTATCAGTATTGACCCTA 929449 24 100.0 40 ........................ GCAATAGTTCTCGCAATCATCTCAGACGCATTTATAAACG 929385 24 100.0 40 ........................ TTACTCGTTGAATATAGTTGCACTTCCCTGGCGTTCTTTT 929321 24 100.0 39 ........................ TCTTTGAGCTGGATGATTTTCGATGCTATCTCATTCTGT 929258 24 100.0 40 ........................ CTTACACAATTTTTATCACAACGTGTACAATTAATTCAAA 929194 24 95.8 39 .........C.............. GTGGAAGTCCTTAATACAACTGGCGCAGTTCTATGCTTA 929131 24 95.8 47 .........C.............. CATCAGCTAATTCCGGTGCGTTAGTTAATGATTGCAAATACTGTAAA 929060 24 95.8 0 .........C.............. | ========== ====== ====== ====== ======================== =============================================== ================== 61 24 99.8 40 GCTAATCTCTTATAGAATTGAAAG # Left flank : TATTTCGTAAACTTTTGGAAGAGGATAATTCAACTTGGAAATTTGAGCCCTCAAACTCTCTATTGCAGTATTAGTCCCGGAGACAATTGGTGAGGGAACAACAATTACCAAACTGTCTTCTTTTTGTGCTGAAGTTTCGTTTAGAAGTCTAAGGAGAAAAGTTTCATTAAATCCCATGGTGACAAAATATGACTTCATACAATAAATTAGTATTACCAACTCATAAATCTTTCTATAAATTAATAAAGTACTAAGAGGAGGAATTTCTAGGAAATTTGAATTTTTTGTCCCGTTTTTGTTAGTGTGTGTTGTTTTATGTTATTTCCTTAGGAGGTAGGATGTTAACCTAAACTCATTACCTCTATGAAGAATCCCTCACTCTCCTAAACTTAGTAGGGATTGAATTAATAATGATAAAAATTGGAAAGAAAAAGGGGAGAACAAAACTTATAAACAGAAAAGGAGAAAATAGTAGTAAATATGAGATTAATAAACCCTCA # Right flank : AATTGACTCTTACATTGGCCAAATAGTCTTCAAAATTCTCGAGAGGCGTTGTCATGCATTCATCTTAGTCGATATATTACAGTGAAACTATATCAGGCTAGAAATTTTTGTGATTGATCGTCTTAACCTATAGGTTAAGGAATTGGAACGCGAAGGACGGTTTCTCTAGGGATTTTATCTTTGTATTTCTCCCTTCCCTTTTTATGGTTGAGTAATTTAGGTCTAGGAGATTATTTTTAGTTGTTTCAACGTTCTGACTCTATTTATTTAATTTAGGGAAGGTGAGGAGAAAGTCATTGTATGTCTTTTTAACACGTGTATTCTTTTTCAGGTATTTTCATTGATGTTTGAGGACTTAAAGGGGTATACATACTAGTTATCGCATCGTATTTTCTCATAGGTAATACTAGACGTAATTTATTATGGACTTTTGCGTGATACTGAGTATCATGGAGAATGCCCGTGATTTTTCATTTTAGTGAAAAATGACTACGGAAGAT # Questionable array : NO Score: 9.25 # Score Detail : 1:0, 2:3, 3:3, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAATCTCTTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: R [matched GATAATCTCTTATAGAATTGAAAG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [61.7-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.27 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 2 937688-940403 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045687.1 Sulfolobus sp. E5-1-F chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ============================================== ================== 937688 24 95.8 40 ........C............... CAAATTGAAAAATAATGTCTTCAATTGTGATTTGGCCTTT 937752 24 95.8 39 ........C............... TTTCTAACTGTACGATTTCATTAATTCCGTCCGAAACCT 937815 24 95.8 41 ........C............... GGTCTAGGGCATCGAAGATACTGGCTATCGTGGGTACGTCT 937880 24 95.8 41 ........C............... GCACAACAGACAATTAGCTTAGAAGTCACTGACCCTGCCAG 937945 24 95.8 40 ........C............... GAAATATTGGCATAAACCGAGACATTGTAGACTTCTGGAA 938009 24 100.0 40 ........................ TTAATACCCGCTACAAGCTTATAATCATCAGTTACGATTT 938073 24 100.0 41 ........................ AATGCTTTAACACTTCAATATCATCATCACCCACATTGAAT 938138 24 100.0 43 ........................ ATTTATTATATTGCGCACGCAATCCCGCGTGAAATTGAAAGAG 938205 24 95.8 46 ...................A.... CTACGTAAATTGGGTCAGCCTCTGTCAATGCCGGTTGCCCAGCTAT 938275 24 100.0 38 ........................ ATTTTTAGCGTATTGCAAATACGTTGACTGTAAATCGC 938337 24 100.0 39 ........................ GTGTCTCGTCTCTTGTTATTGTTGTGTCAAGCGCCACAG 938400 24 100.0 38 ........................ TGGGTGGGTGTTTCTTCTGTACGTTGAATTTTTCTCAT 938462 24 100.0 40 ........................ TTTATTATGCCATACGCTATATCAAGCCAATAAGTTGTCC 938526 24 100.0 40 ........................ TTGACAGACAAGATCGTTGACAATAAATTCTTCATCTTCT 938590 24 100.0 40 ........................ ATTATCAGCATCATTAGGTCTGGCCCACTCCCCACCCTAG 938654 24 100.0 39 ........................ GATTTAGTCTGCTCATTAGGTTCAAAGTCGTAAAAAACT 938717 24 100.0 42 ........................ AACACGCTTGTGATGAACGCATCTATTGCTGTAATTTGTGCA 938783 24 100.0 41 ........................ ATTATAATCTTTGACAATTTCTTTCTCACATTCAAATCCAT 938848 24 100.0 38 ........................ AAAAATGTCAACTATGGAGGAAATTATGCCAATAAAGT 938910 24 100.0 39 ........................ CAGCCTAACCCCAACTATCCGTTTACATTTTCTGTCATA 938973 24 100.0 41 ........................ AACAGAAAGACGAAAACAATAATCACTAACAAAAAAAGCTT 939038 24 100.0 41 ........................ GTCCCTGGGGGGCCATGTAACAGAACAATCTGAAATGGATT 939103 24 100.0 43 ........................ GAATTATCGGATGAACCTGAACTATCACCAGAACCGGACCCAC 939170 24 100.0 39 ........................ TTTAATGTACTACCAGCGTATGCTTTTTGAGATGTACTA 939233 24 100.0 41 ........................ ACGGCAAATTACGTTTATGAAACGCATAGATATTCATTCGT 939298 24 100.0 37 ........................ TTCACCATTATTGTGTTCTCTTGCTTCTGATAACTCA 939359 24 100.0 40 ........................ TCAGCAGCGGCAATAAGGCAATTAATAATAGATAACTTCC 939423 24 100.0 37 ........................ ATAATTTACACTAACTTTACACTAACACACACGGCGT 939484 24 100.0 40 ........................ GTCATCTGCAAGATTACAAAACGTAAAACAAAAAATAGCT 939548 24 100.0 40 ........................ ATACTGTAGCTGATGCAGCTGTACCTGTAGCCGCACTACC 939612 24 100.0 38 ........................ TAAGTCCAGCTGGTTGAATCAATGCTGATCCACTTCCA 939674 24 100.0 41 ........................ TAATTTATCAACCGTCTGTTATTTTTCTGGTTTCGTGGTGG 939739 24 100.0 42 ........................ ATCTAATGAATTACAGTTGGAAGGTAGAAAGCACAGGTAGCT 939805 24 100.0 40 ........................ ACAGTTTGTCAATGTCGTGAAGGAGAAGTTCTGGTATTTG 939869 24 100.0 41 ........................ AATTTTCAGTTTCTACGGTGTACCAAAAAGCGATATTGACT 939934 24 100.0 40 ........................ AGTAACGACTCAATGTTGTATCCAAATTCTCTCCTAATAA 939998 24 100.0 38 ........................ TCGTATTTGCTGTCCCTAATCCTAACGCTATAGTACTG 940060 24 100.0 40 ........................ TAAAAGCATCTATTTGGAAACTCTTGCTTTAGCTAATTCC 940124 24 100.0 39 ........................ AGTATCAGCTAATGTGAGTTTGTTATTGTTGTTCTGCTT 940187 24 100.0 38 ........................ CAGCGGTGCCTTCATTTTTCAAAACTCATTCTCTTCAT 940249 24 100.0 41 ........................ ATTACGAGGTATATTACACTCCCACCTATCACCCTAACTGT 940314 24 95.8 42 ........C............... CAAGTTCTTAGCACAGTAGCGGTAGAGAAACCATAACTTCTA 940380 24 95.8 0 ........C............... | ========== ====== ====== ====== ======================== ============================================== ================== 43 24 99.2 40 GCTAATCTATTATAGAATTGAAAG # Left flank : TAATTGGGGGCATGTGATAGTTCCACCCTCTAAGCTCCTCCTCAATAGGGTCCGAGGCCCTATATGAGTGGAGCCTTCGTAACTGTCTAATTATCTGGGACCTCATAATATAATGGCAGTTGTCGAATTTAAAATCCATTTTAAGGGGAGGGGTAAAGGAATTCCCGGCTTTACTAAGGATTAGCCTAGAATTTTGAAAGTTTTCTCTACATGAAGATTAATAATCTAGGTAGGGAAAGATGTTACTCCACCGTTAATGGAAACGGTTACTAGTTTTGAATTTTTTGTCCCGTTTTTGTTAGTGTGTGTTGTTTTATGTTATTTCCTTAGGAGGTAGGATGTTAACCTAAACTCATTACCTCTATGAAGAATCCCTCACTCTCCTAAACTTAGTAGGGATTGAATTAATAATGATAAAAATTGGAAAGAAAAAGGGGAGAACAAAACTTATAAACAGAAAAGGAGAAAATAGTAGTAAATATGAGATTAATAAACCCTCA # Right flank : GAAAAACGATTGGAAATGGAAGGGGACTTTCACCCCCTTAATCCCCATAAAGTTAAAAATAACGAGATTTCAACATTAGGTAAGATTTGTGAGTCCCTTCGTAATTATACAAAATTTTAACTAATTAGGTATTACTATAAGTATGGGCAACACTTTACTTAATTAACAATATCATTTACACTCGTATTTAGTGGATAGTTATAAATGCAAGTATTTCAAATGCATGAAATTACTCCTCCGCTATCATATCATTAGTGAACGTTACCTAAAAAAGTGTAAGGACTAAACCCCATCCTTCTTTGCGTTGTTATACATTAGTTAACTAAAAAAGTGAATATAAAATATTTCTTATTTATTTATTGGGTATGTGTATATATGTACACATGCATACATGCATATATAATAATAAATAGAATCTATTCTAGTTTTTTCCTTTCTTCAAACGTTTTCAACTCCTTGGCTATATCTGGATTTTCATCAAACACTTCCTTCAACAACTC # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GCTAATCTATTATAGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: F [matched GATAATCTCTTATAGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.20,-0.10] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [75.0-63.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.27,0.41 Confidence: HIGH] # Array family : I-A [Matched known repeat from this family], // Array 3 953861-955416 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045687.1 Sulfolobus sp. E5-1-F chromosome, complete genome Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================= ================== 953861 24 100.0 35 ........................ CGTAGGTGCATGATTCTTCTGGGTCTAAGTAGCCA 953920 24 100.0 34 ........................ AAAGTATTTGCCAAAACGCGGAGCAAGTAACGAA 953978 24 100.0 34 ........................ TCCTTTGACCGGCTGGAATAGGTGGGTCTGCCAT 954036 24 100.0 34 ........................ TTGTAACCTTTGGACAGAACAGCACTTAGCCTAT 954094 24 100.0 36 ........................ GATGTTCATTGTCACTCACTGAAGCTTTAAAATAAA 954154 24 100.0 35 ........................ AGCTATCGCTAATTTCTTACAAAAGTATGCTGATA 954213 24 100.0 35 ........................ TCTTTGTTATTGGCGACTTAAATAGCGGAAACAAA 954272 24 100.0 33 ........................ TTGAGCCGGCTGAGCAAAAATAATAGCGTCTTT 954329 24 100.0 35 ........................ GAACTGAGTTCACTACTCTGTGTGCTACGTTCCAC 954388 24 100.0 33 ........................ TATTGCGCGCACCTTTTTGCGGTGTCGGCTCCT 954445 24 100.0 35 ........................ AAATTAAAATATGATTTCCAAATATAAATATATTC 954504 24 100.0 35 ........................ TCTAAGAAGCTTACTATATCTTTTAGCCCAATAGC 954563 24 100.0 35 ........................ GTTAGCTAGTACAATAGATGCAGTTCCTATCGTGA 954622 24 100.0 33 ........................ TGGGGGAATGTTGGGGATCAAGGTATATTGTAC 954679 24 100.0 34 ........................ CTACCAGCAATACACGAGGCACACCATTCTCCAT 954737 24 100.0 34 ........................ ACACTCTTGCCAGCGTACATACTCTCCTCTATCA 954795 24 100.0 37 ........................ GTACGCCAAATAAATGTAACCATTTTGTATGCCTTCT 954856 24 100.0 34 ........................ TATATTCCTGCATTTTCTATCCGATATTGGACAG 954914 24 100.0 39 ........................ TTACAAAGTTTTACGATGCTTACGTACAGCAGTGTGGGA 954977 24 100.0 37 ........................ ACCTCTACCTCATCATATCTACGGCCAACTTTAACAT 955038 24 100.0 37 ........................ TAATTGCACTTTCTTTAGATTTGAGTAACATTATAAG 955099 24 100.0 35 ........................ TATGAACTAGAGATTATTCAAGGTGCAGGATAAAT 955158 24 100.0 35 ........................ TTCACCCAAGTATATAATGAGAATATAAAATATAA 955217 24 100.0 32 ........................ CTGGTGGTGGTGGATGAGCACACTTTACACGT 955273 24 100.0 35 ........................ CCAGGGCTACATAACTACACTAAGGGGGCTTAACT 955332 24 100.0 37 ........................ GCTTTTATCGTTCAAAAACGTGTAAAGAGTGCTCATC 955393 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================= ================== 27 24 100.0 35 GTAACAACGAAAAGAAACTAAAAC # Left flank : GAAAACTACTAATCATTATAGGGAAGAAAGAGAGAGGCAAAAGATGAAAAGAGTTAGTATCATTAATATATAAGTGATTCCGCATTATGCTAGTATTATAATCTCACAGCTTACTGACGTATTATTAATAATATGATACTCGATATAAGCAATTTGAACGCCTTTGAAATATTTATATAATAATTCTCTCTATATTAATAAAATATTCTATTATAGAATTGTGATAGAAGTTCTGAATAACTTCATCACTTGTTCTTTAAGATAAATAAATTTCGGGTAAAGTAATTTTTCCCTATTCCTCTTTACGTTTATAAACGTGAAAATTCCCTCAATTTTAGGCAAAATCCCCCTTCAAGACCCTTACGTTAGACCATTTTAGGTATACCCTAAAATTTCCTAAAGTCCCCTTCCACACCCTAGATGAATCTTTAGGGTATGGAAGAGAGAGTAATGCTTATAAATAGGGAAATTCAAATAATTTTTGATGATATCGAGGGTCA # Right flank : CTTCCACTGAGATTTATGGGAGTGTTCTCATGCAGTCATCTTATTCGAGAACTGTTAGTAAATTTATATCAGATCATCTCTAATATACTGTACTGCCCTCAAGTAAGTCTCGTTTAAGGGCGTTATCTCCCTAGAGAATACGTGAGGATACATAACGTTCAACAAGGCCAAGCTATATTCCACCATCCTCTGACTCCTATTAACAGCCCTAGTATCCCTAGCTAACCTAGCAAGATGAGACCTACACCAAGAATTATGGCTCTCCACAATGTAAGTGTACTTCTTACTAGCTACGCGTTTATCAAGAACTTGATAAACACAGTAGTGATCAGTATAGTTTATCCCACTCCTAGGTAACCAGCTCAAGAGGAGACGGAAAGTCCCATAACTTCTGTCCCCAGACTCGTAAAAAGGTACCCCATCAGAAAGAGCAGTCCAAATCCAGAGATCCGCTCTAACCTTCCCATGCCTAACACGAAGATAAGTCCAGAACTCGTCAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACGAAAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [70.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0,0 Confidence: NA] # Array family : NA // Array 4 956636-960180 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045687.1 Sulfolobus sp. E5-1-F chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ======================================== ================== 956636 24 100.0 35 ........................ ATTTTTCAAGATGGTTTGAATGTTCTCCTTCAATG 956695 24 100.0 37 ........................ AGAAGTGCTTAGTGTCTCAGAAGTACCAGCAATAGAG 956756 24 100.0 36 ........................ CTAAAATCAATTTTGGAGAATAAAAGCTAGGGACCT 956816 24 100.0 37 ........................ TGGAAGCAAGGAGTCAGTTCGATAGGGGCACAAAGGT 956877 24 100.0 36 ........................ TTATTTCCGCCTTAGATACTATCATTCGACAAATCA 956937 24 100.0 36 ........................ ATAATATAGTTGAGGACTTCTATAAGAAACTAAACA 956997 24 100.0 37 ........................ TTTTCTATGTCAATTACGATACCTTTCTCGTCTTTCG 957058 24 100.0 35 ........................ CCAGATTGCTGACCGTATTGGATGATGCAATGAGT 957117 24 100.0 35 ........................ TTATCTCCTTCTCTGGATGAAATTACTGTCTCCTT 957176 24 100.0 34 ........................ CTGGACCGCTTTCGCCATTTCTGCTGCGCTCGGA 957234 24 100.0 37 ........................ TGCCGAAAAGATTGTTTCTGAAGTGATTAAATTAGAA 957295 24 100.0 36 ........................ ACCTAGTTTGCCAACAGCTTTGCAAAATGCAGTCAG 957355 24 100.0 37 ........................ CATATAGAAAGCTCTTACGATTATATTCGAAGTATTG 957416 24 100.0 35 ........................ TTTTCGCTTGGTAGTTCCGCTAACTATTCCAAATT 957475 24 100.0 38 ........................ GCGAATGTGGTTGAAATAATTGTAAAAATTAAAGTTAT 957537 24 100.0 36 ........................ GCAAATACTTTTGCTTTGCTTTTGATGGCTTTGAGA 957597 24 100.0 36 ........................ CAACAATGCGGAACGCTATATGCTCCAGCTCAATTT 957657 24 100.0 36 ........................ CATTCTTTTTTATCGCAAAGCAGAACATTATATTTG 957717 24 100.0 34 ........................ TTCGTGGTCCATTGGAGTTGCGAATGGTAATACT 957775 24 100.0 36 ........................ AACTTGACTTTTTTTGGCATTTTTACACCTCTGAAT 957835 24 100.0 36 ........................ ATATTTGGAATTTAAGGCAACTGTTGCCCGAAAAGG 957895 24 100.0 36 ........................ CATGGCTTCACAATACGCTGCACATGATTCACAGTC 957955 24 100.0 35 ........................ TTAGATAATCAAGCTTTCCACCGAAACTAACCACT 958014 24 100.0 35 ........................ GTTTTGACCCGAGAATGATAGCTGATAATCCAGAT 958073 24 100.0 35 ........................ TTCATGTCAATTTTTCCTTTTTCGAATAATAGTGA 958132 24 100.0 35 ........................ CTAATAGGCAATGTAGCTTTCTATGGGTTGGATTC 958191 24 100.0 34 ........................ ATGATTTATATAGTGTACATGATACACTGACTTT 958249 24 100.0 35 ........................ TTACTTTTTTTAATATTTCTTTTATCTCACTTTCA 958308 24 100.0 35 ........................ AAGATATTGCAAAAATATTACAGAGGAGTAGGGGA 958367 24 100.0 38 ........................ CTTACTCCTCGCAAGTCTAATGCTAAGCCTAGGGCCAT 958429 24 100.0 35 ........................ ATAGCTGAATATGCAAATGAAAGCTATTCACCATG 958488 24 100.0 34 ........................ GAGTTTTCCTTCTTTGACATGTATAGAACAAAAT 958546 24 100.0 36 ........................ CAGCTGTAGCTGAGTATTGCCGATGATGGCATTTTG 958606 24 100.0 33 ........................ CCCTACGCCATAGGCAATGAGAGGGTAGTCATA 958663 24 100.0 34 ........................ TGCGTTTAAGTATACTTTTATGAACTTAGACAAT 958721 24 100.0 36 ........................ GTTTCTGCATCTACATTTCAATTTAGACTAGAGTGG 958781 24 100.0 34 ........................ ATTGTGCAACCTAACGTAGACCCATTGACAGGAG 958839 24 100.0 35 ........................ GTTATGCCGTCGTTTTGGTACGTAGTACCTAGACT 958898 24 100.0 36 ........................ TAAGGTACTACTACTTGTGTATGTGCTTCCCCAGAT 958958 24 100.0 37 ........................ TAATTTCAGCCTTAAATAGAAACGTACAACAAATCAA 959019 24 100.0 35 ........................ TTCGTTTGCCATAATTATATATACGTAAAGGATAT 959078 24 100.0 39 ........................ TGGTCAATTCTTTTCCCCTGGGGTGCACTCATTTCTACT 959141 24 100.0 36 ........................ TAATCACAAGTTCACAGTTGAGATAAATAGCATAAT 959201 24 100.0 36 ........................ TTTGCAAATCAGCGTTTGACGGGCTTATTGAAGCAT 959261 24 100.0 35 ........................ TTGCTTTCCACGCGGAAAAGCCTAGTTCTAGTTCT 959320 24 100.0 35 ........................ GGGAAATCGCTGATATTTATTCAGTTGAGCCAGAA 959379 24 100.0 36 ........................ GTAAACTACCCTGACAATAAGGGAATAGTTTATGAG 959439 24 100.0 40 ........................ CCAACTTTTGAGCACTTAGAGGTATATGCCTACTTACCCA 959503 24 100.0 35 ........................ GTTGTTGCAGTACCAAATGCCTCGAGCTTTCAATT 959562 24 100.0 36 ........................ ATATGCCTTCGCTAACTCTTTCAATTTTGCACTTCT 959622 24 100.0 35 ........................ TATTAGCTGGGATTTTTTCAAGTTGTTTTTCTGCT 959681 24 100.0 38 ........................ TCGCTTAGAAAGAAGAGGGAAAGTGAAGCTGATTCGAA 959743 24 100.0 34 ........................ CATTCCGCTTCCTTCTAATATACAACATCACAGC 959801 24 100.0 35 ........................ CAAGGGATATTTGCAGTAAATAGCACAACGGGTAA 959860 24 95.8 36 ....T................... TGCTGACTACCCCCCTCTGGGGGTTTTGACTCTTGT 959920 24 100.0 36 ........................ ATTGTAGCGTTGAATCGCTTCAGATATTGCAGATTG 959980 24 100.0 34 ........................ ATGTATTCTATGCTCTAACAGCGCAACTTTTTCA 960038 24 100.0 36 ........................ CAGTTTCGGCTTGCTCATAAGTTGCTTTTTGTAAAA 960098 24 100.0 35 ........................ ACTTGCATGGCGTAGTTGAAGCTATTCCGTGTCCT 960157 24 100.0 0 ........................ | ========== ====== ====== ====== ======================== ======================================== ================== 60 24 99.9 36 GTAACAACGAAAAGAAACTAAAAC # Left flank : TCTTCCACACGCTTTACACTTGTATTTTTCTTTCCCTCTGGATGAGCCGTTCTTGACTACTCTGTTGGAGTTGCATGATGGGCATGTTGGTCTCTTCTCCCTTCTCCTTCTTATTCCCACTTTCTTCACGTAGTAGTATAGTGTTGATGGTGGGATTCCTATTTTCGTGATCTGAACTCCCAAGGAGTATGCTGCTAACGCTAGTGCAAGATCCTTTAGCTCGTACTTTCTTGGCTTAAGATTTAAATTTCTTAAAATCAAAAGTATTAGTTGTGCGAGGATTACGGGATCCATCTGTAATAGCCTCACAGAGAATCTCGTAATCCTCGCACATAAACCTTATTCTAGAGACCGTCCTTAGCGTTCTAATTCCTTAACCTATAGGTTAAGATGAGTAATTATAAAAATTTCTAGTCTGATATAATTTTACTAATACTTTTCGAATAAGATGACTGCATGAGAACACTCCCAGATTTATTGCTAGAGTTTCAGCTTGTTCT # Right flank : CATCAACTAAGTAAAATCAGAACTAAAACATGAGAATAAGTAGAGAGGTGCTTAGTTAGTCTATTAAATATTTTTATCATAGTAAGCCACTATTATTTTTTCTTCAGACTTATCTCGACATGAAAATTTCTATTTATAAACTCCTTAACTCTTCACTAAAATTCAACGAATTCACAAAGTATTTGCAGCTTTAATATTTATATAGAACCTTTTTAAATTATATAACGGTTGAAATGATCACCCCTTTAGCTAGTATTGACGTAAAGGTATATTCTCCACTGATAGGAGGTTATGGTGGGACTTCGTATTCTCTAGAGCTAAATGAAGTAGAGCCTATAAGGCCAACTGAAATTAAAGCCTTATGGAGATGGTGGTATAGAGTAGTTCTAAATGACGGTAATAAAACGTATGATGAATTGGATAAGGAAGTTAGTAAGCGTTTGGGTTCCACTTCAGAGGTCTCGAAATACGTTTTACGTGTAACTACGAAGGAGCTTCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAACAACGAAAAGAAACTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 5 967719-971399 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045687.1 Sulfolobus sp. E5-1-F chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================== ================================================ ================== 967719 24 100.0 35 ........................ AATCGCTAGAGAAGTCGTGGGGAGAGTGTTATGAT 967778 24 100.0 36 ........................ CACTTAATGGCAACAATAATACCAAAAGCCCAAGGT 967838 24 100.0 36 ........................ CTAATTTATGGGTACCATCACTTTCAATATACGCTT 967898 24 100.0 37 ........................ ATTGTTAGCGGACTAGAGGCCTTTGCGAATGCCATTT 967959 24 100.0 37 ........................ ATGGAGAGGAAGAGATCATTCATCTATGAGGAGTGTG 968020 24 100.0 36 ........................ ATTGAAGAACAGCTATAATAAAGAAGAACTAATAGA 968080 24 100.0 45 ........................ CACAAAGCCATAATTATGTCTAAAGGCATTGGTAAAAGCACAACA 968149 24 100.0 35 ........................ ACAACAGTATCAGGGCGAATTACCACAAGCACCAC 968208 24 100.0 39 ........................ CATTCCTTCATCAACAACAATAAATGTAACAATACATAT 968271 24 100.0 35 ........................ TTGTCGATAGATTTGCCCGTGCTCAGAGTTATCAA 968330 24 100.0 42 ........................ GAATATGCCTTCTGGCGAAGACTGCTGATTGTTGAGTTTCCA 968396 24 95.8 36 ................T....... CCAGTTCGTTGTTTTTAGTAATGGCTAGTAATATCT 968456 24 100.0 34 ........................ ATGGTGTGTTTGTATCTACAACTTTAGATAGACA 968514 24 100.0 37 ........................ TGCTTGCTCTAGCGTCTGCAGATATTGTTGATATGCG 968575 24 100.0 34 ........................ TCGATAATCTTCGCATCCCAAAGCCTGTTAACCT 968633 24 100.0 35 ........................ AAATAATCCCCCTCTTCCCGCGAACGAAAAACAAG 968692 24 100.0 34 ........................ AAGGCTAGTGAAGAAAAAGAGAAGAATCCATACG 968750 24 100.0 39 ........................ TGGGGCTCCGACATTCCAGCTTCGTGGAGCTGTTGTTGT 968813 24 100.0 38 ........................ AGAAGGAGGGGGAGAAAAACGTGGACAGCTCTAACACT 968875 24 100.0 35 ........................ ACGTATTTTGACATTACATTAGTTGTATCAATTGT 968934 24 100.0 35 ........................ GCTAACTGAAGCTAAGGAACAGAAATGTGCTCCAT 968993 24 100.0 34 ........................ CACAAGATAACATAAACAGGATGGTGAATTTCGT 969051 24 100.0 37 ........................ CTGTATCTTCTACTACCGTATCAAGTACGTGTAATAT 969112 24 100.0 33 ........................ ACATAAATGACTGTGAATGCCGTGTTGATAAAT 969169 24 100.0 36 ........................ AATTCAGTCTGAAAATGACTAACAGCCTGTCTCTAA 969229 24 100.0 35 ........................ TTGAAAGCGAACAACAGAGCCTACAAATCTCAAAA 969288 24 100.0 36 ........................ ACATTTTTATACATTTGATTCTATGTAAAGATATGG 969348 24 100.0 35 ........................ CGGAAAAGAAACCATTCTTGAGAAAGAAAAAGAAA 969407 24 100.0 37 ........................ CTATTACTAGGTTTCCTATTTGGCAATAGAGACTAGT 969468 24 100.0 34 ........................ CACTTCCTCCTAATGCAAAACAGCAAACCTATAT 969526 24 100.0 35 ........................ AATAGAAACGTTTACATGGGACATTAAAAAGATAG 969585 24 100.0 37 ........................ TGTGTATAACCAAAAATAAAGAAAACGACAAAAATTC 969646 24 100.0 35 ........................ GATGTTGTGGTTGAGGAAAGCGTAGCTGGCGGTGG 969705 24 100.0 35 ........................ TGAATGCAGGGCAAACTAACGATGGACAAGGGAGT 969764 24 100.0 36 ........................ TATAGTGAGTGGGAATTACGTTGAAAGTTCCCAAAG 969824 24 100.0 35 ........................ TAATATTACCGCTTTCATCTTTGCCAATTGTCACA 969883 24 100.0 38 ........................ TGTAAGTGACTCAGTTTGGACTTGACTTTCGCCATTAT 969945 24 100.0 39 ........................ TCCAGCCAGATGGTACCGTAGTTCCAGCAAAATTCCAAT 970008 24 100.0 35 ........................ TGAATACAAAATATGCAGACGAAACGAAAGATATT 970067 24 100.0 35 ........................ GTCTACCGCGTCGTTTACGTTCACTCAAAAAAAAT 970126 24 100.0 34 ........................ GAGACAAAAGATATGGTAGTATATGTGCCATTGG 970184 24 100.0 35 ........................ TACAACACTAAACTCGGGCATATACAAACTCAAAA 970243 24 100.0 37 ........................ TATAGAACAGAACAGTACGGTACGGAGAACGGAACGG 970304 24 100.0 34 ........................ ACGTTTGGTTTAGCAGTTATGGTAACAAGTGGGA 970362 24 100.0 35 ........................ ACTTATCTTTTAATGCCATATTACAAGCACAAAAG 970421 24 100.0 33 ........................ TTATTATTGCATTTGGTGATGATGACCAATTAG 970478 24 100.0 35 ........................ TTTTACGTGTTTTCTCGATGAAGGGAATTGACAAA 970537 24 100.0 37 ........................ TTGAGTAAACTGCTTTTGCTCTGATTTCTGGACTGTT 970598 24 100.0 34 ........................ AAGCGTTAAATCCGCCAATTTATTTTCGTCTTCA 970656 24 100.0 35 ........................ TATGCTAACAAGATAGGGGTACATCATTTCACCCT 970715 24 100.0 38 ........................ CTCCGGTAATTGCTTTGCCTCCGCCTCTATCTTGTCAA 970777 24 100.0 36 ........................ TCATACCGGCTGAATTATTCAATTTGCATGCAAGCT 970837 24 100.0 34 ........................ GAATTGAAAGTCCTTCATCAACAATTTCTGACGT 970895 24 100.0 35 ........................ TACGTAGCCAGCTTCATACACATCAAGAATTTTGA 970954 24 100.0 48 ........................ GGAAACGAAACAATTGACCTTGCAGGTTTCCGTTCTGAGTAACAACGA 971026 24 100.0 34 ........................ AAACACTATATCTTGCAGCATAGTTTTCTAAAAG 971084 24 100.0 39 ........................ TATCAGTTCTTGATATTCCTTGGACGTATAGAACTTTTT 971147 24 100.0 35 ........................ TGCGTAAAAAGAGAGAGAAAGATTTTTAAACTTGG 971206 24 100.0 44 ........................ TCTCTCGTCTGTTGAACTGCTGTTACCTGAGGAGCCATCTCATT 971274 24 100.0 34 ........................ AGATACCGCCAAATCAAAACCCAGGTGGATATCA 971332 24 100.0 19 ........................ TGGCTCTCGGCCTCCTCAA Deletion [971375] 971375 24 75.0 0 .A.......AG.......AT...T | G [971384] ========== ====== ====== ====== ======================== ================================================ ================== 62 24 99.5 36 GTTTTAGTTTCTTTTCGTTGTTAC # Left flank : TAGTACCATTAAAATCAATTGAGCCAAAACAAGAGTCAAATGAACTTCAATGATATTTCACAGTCTCATCTTTTAGATTACGAAAGGAAAAGCTTTTTCCTAAATTCCATAAAAATAGATAAAAGTGACGTTCGTGAAATAACTCTGACGTGAACTGAATTTTTGTAGGTCTCGTTATAAAGCATAAAATTGTCTCAATATCTTCTAGCCCTTAAAGATTTAAAACCTCCTCTTTTCTCTATTACCATTATCATCTCAATTATCCAGGGGAATCATATAATAACTGATACCTTGTATAGTAGTTTCCTGAAAACGACGCATAGTATGTAACGTTTAGTTTTTTCAATGTAGAATTTAAGGTGTATTTATACTGTATACCCTTAAACTATTTACGATTACTTAAATCTTCTTGAAGAGAATCTATGTTAATATTTAAGGTTTAAGGTAAATTTACGTAAAGTACTACTTGTAGATCATCACCCTTAACCACTTGTTGTTAT # Right flank : TAAATATTTCTGTTCCTTCCACAACCTAAACTGGTATCTTTTGTGTGGAAGGGGATTTTACGTAGTTTTAGGGTTAACCTAATACCCCGTATGTTGAGGGTTTTGAAGGTGGATATTCCTTAAAAACAAGGGAAATTTCAACATTTATAAACCTTAAAGGGTAAGAGAACTTCTTGATAAAATCACCTTAGGCAGTCATCTAGAGAAACTTTCTTCTTTCTACTTAAGATACAATATTTTAAAAAGGAAATAAAATAAATATTATGTCTAACTTCTGAGTAAATCTTTAAACTATTGAAGTTGAATAGGATAATATAATGATGTTGTTTTTAATGCTTTTAGTACATACCGAGAGTCAGTGAGGTTGAATAGGATAATATAATTAGTAGTTTCATGAAAATGACGTATAGTATGTAACGTTTAATTTTTACAATGCAAGATTTAAGGACATTTATACCATACATGCTTGGTATATTTACTATTATTTAAATCTCATTAAA # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.00, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTTTCTTTTCGTTGTTAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.83%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [68.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 6 974759-977334 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045687.1 Sulfolobus sp. E5-1-F chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================= ================== 974759 25 100.0 40 ......................... ACTAGAATCATTTCTATTGATATTGGAAATATTTATGTTC 974824 25 100.0 36 ......................... ATAAAATTACGAAAATAATAAAGTTCCCGAAAAGCA 974885 25 100.0 41 ......................... ATAACTGTGTTTATGTGTTAGCGTTTTGGAATGAGGGGTAT 974951 25 100.0 40 ......................... CATTCAAATCCATTTAACTTCAACACTTCCTCAACAGCAT 975016 25 100.0 39 ......................... AAGCTTCTCACCGCAATCCAGCTTCTGATATCGGCAAAC 975080 25 100.0 40 ......................... GTATCAGTAACATCTAGTGGTATGGTGACGTTAACGGTAT 975145 25 100.0 35 ......................... TTTCAACACAAACGCTATCGCTTTATCGTTAACTT 975205 25 100.0 38 ......................... TTTTCTTATTCTATTTAATATTTAATATCTTTTTCTAA 975268 25 100.0 39 ......................... AGAGCATAAACCGCATCATCTAAAATTTTTTGCTTTGAA 975332 25 100.0 40 ......................... AACACATTGGCAGTGTTATGCTATCACCCACGTTGTCACT 975397 25 100.0 36 ......................... AAATAAGAAGTTATCCATTTGTTATTTGTATCGGAC 975458 25 100.0 39 ......................... ACAATATACTCAATTTCAATTTCATGTTTTTGACTTATA 975522 25 100.0 40 ......................... GCTCTTTCTCTAGCTGTTTATCTTTGCGCTTTTCAATTTT 975587 25 100.0 40 ......................... CACAGTAACTGTAGCAGCAGCGCCAACTTGAATGTTTACC 975652 25 100.0 40 ......................... TAGCGTTACAGATGTTGTACCTCCAGCATTTCCACTTGTC 975717 25 100.0 39 ......................... TATAACTTTAGAACTTTTTCAGAATATGTCTGAGCACTC 975781 25 100.0 36 ......................... TTTAAAATAATAATATGTCATTAGATAATTATTTAG 975842 25 100.0 39 ......................... TACAAAAAAACTACTCTATCTTTGAGCTGAACTGCGAGA 975906 25 100.0 37 ......................... TTAATTATTTCTACCGAGTCTGTTGACAAGTCCCTAG 975968 25 100.0 39 ......................... GTTGAGGAGATTAACGCGTTGCCTCCTATAGCGTCCCTA 976032 25 100.0 40 ......................... TATGCCAGCTCTTCTCAGACTAACATTTGGAATTACTATT 976097 25 100.0 41 ......................... AGTTTGAATTTTTCACAAAGTGTATCTATATTCATTTTTAT 976163 25 100.0 40 ......................... TCCACTTCACTTACGATTAAATCTTCATTTAAAAAACGTT 976228 25 100.0 39 ......................... GATGACATAATAAATATTGTCAGAAGAACTGAATACCCA 976292 25 100.0 41 ......................... TTTCTTTAGCTCTTCTACGGGTATGGATACTCGCTTAGACA 976358 25 100.0 39 ......................... AAAACATCGTCCTCATCCAGATAGAAATGATTTGTAATG 976422 25 100.0 35 ......................... TCCCATACTTTCCATGACCACTGCCCAAGATTAAT 976482 25 100.0 32 ......................... TAAATGTGTCATTCCCAACGCTTACTGTAACA 976539 25 88.0 40 .........GCA............. AAGGCCTACGGTCTGAAGGGAGCGCTTTAAGCCCCATTTT 976604 25 88.0 39 .........GCA............. GAAATGACACAGGGATTGATGCGAATAAATACGCACTAC 976668 25 84.0 38 .........CGA..C.......... CGTATCACTGTTGAGTTCGATGATGCGACATTCAGCAT 976731 24 96.0 39 .........-............... TTTAACGTTTCAGTGCAACACATATTTCAGTCAGCCCTC A [976743] 976795 24 92.0 40 A........-............... ATTGCATTGGCAAAACTTGTGCTAGGTGTTATTCTCAACT A [976806] 976860 24 96.0 39 .........-............... GACTTTTTTGCCATCACATTCTTTTGTTGGGTACAGCAT A [976872] 976924 24 96.0 38 .........-............... ATACTTCTGTTCATGCTGGAAAGACAGTAGAAATACAG A [976936] 976987 25 92.0 41 .G.........A............. TTAGCGCTTGTCTGATGACTTCGCTTGTCGTCATATCGTGC 977053 25 92.0 39 ...........G...A......... ACAAAATATACGGCAGTGCGCGCTGGGTACATCACAAGT 977117 25 92.0 39 ...........G...A......... ACATCATCCCATTTTGCTCTAGGAGATGGCATCAACCAT 977181 25 92.0 39 ...........G...A......... ACGAATTTGCTATCCTATTTATTGTTGGCTTATTCTATT 977245 25 80.0 40 ...C.....CGA..C.......... AAAAACATAGTATTGCCTCCGCTTCAAGCTGCAGTCTCAA 977310 24 92.0 0 .........-.....A......... | A [977322] ========== ====== ====== ====== ========================= ========================================= ================== 41 25 97.1 39 GATAAATCCTACAAGGAATTGAAAG # Left flank : ACCCATCTTTACACTGGCTTCTTTCAATTCGTTTAGTGACTTACCATATACTGTTATTTCTTTAATTTTAAATAATTTTTAGTGTTAGGTTGTGGAATTAAACGTGAAATTTACGTGCTTATAAATCTCTTTAAAAAGATAACTGTTCGTTAAAATGAAAAGTAATCAAAAAAATTAGGGTTAGAATGAAACAATTATTTACGACATGTAACGAATTTAGATGGAATCTCTCCAATAGACGTAACTATAAAAGTTCGAGTTGATTAAGGAGTTTAAAAGTGTAAGAATTCGAGTCTAGATGCGACCAAAACGAATCATTATAAAATAATTGAACGTATATAAATGATAACCCATGTTTCAATTAAACAAAAAATCCTTGCGACCACAATTTGTTAAATTAATTACAACTAAAATTGGTCGCAAGGTAGAAAGACGAGAGAAATGAAAAACTTATAAGCAAGAAACGAGAAATAACAATATAGAAGTATAAAAATACACCA # Right flank : GATTAGATTACCTTGTTATACTATTATAAGAGGCTTGGTAGCGTTAAGTACGTTGTATCCTTGAGATACTATTCACGAGACTCTTGCGTTAGGGTAATTATTATTACATTTGGATCGTTAGGGATGTTGTATTGAGGAGTGGTCTTCACGTATTAATTGTTAACATGAGGGGGATTGATAGTTAGGAGGATCGATCGAGTGATTTACTTGCATAATGGTTTACCAGCTTATAGTACTTTTGACTGGTTTAATGTTGGGCATAAGATGGTTTTGTAGGAGGGATTACGCTGAACAAGAACATTAAAGGATAGACTCTCCTCTATGGACTTTCACTTGGAGTTCCAATATGTTAGCGAGTTGGCTCTCTACCTTCTTCCTAATCTACAACATTATTTACACTCAAATTTAGTGGATAAGGAAGTGATAATTATATATGCACATATTTCAAATGCATAAAATTGTTGACCACGCTCGAAATGTAGAATCAATTACTCTAATCT # Questionable array : NO Score: 9.11 # Score Detail : 1:0, 2:3, 3:3, 4:0.85, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATCCTACAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-21] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0 Confidence: HIGH] # Array family : NA // Array 7 988163-985262 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045687.1 Sulfolobus sp. E5-1-F chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ========================================================================= ================== 988162 25 100.0 39 ......................... AAGATTACGCCGAATGCGTTTGCAAAATATTGTAAATAG 988098 25 100.0 41 ......................... TTAATTGATTCAGAATTTTCCATCTCTTGTTTCAAGTCTTT 988032 25 100.0 39 ......................... AAATCTCTTATCAATGACATCGTTACATTATCAAAAAAG 987968 25 100.0 42 ......................... TATACGAATACGTCTTAGTGGAGTTCTAGGTTGTGGATATGG 987901 25 100.0 40 ......................... CCTTTAGCACCTTCAACTTCAGCTTATTTAAACGCTATTA 987836 25 100.0 41 ......................... AACAAGATATGATTGATATGACATTGCTCTTCCATACTCAT 987770 25 100.0 40 ......................... GCTAGTGTAACCAGATAGACGATGTTCGTTACGGCCTGTG 987705 25 100.0 41 ......................... TTTCCTTATCCAGAACCATTCATAAATCCACTTGAGGGCGG 987639 25 100.0 39 ......................... TTTCTCTTTTGGTCCTTCTTTCAAGTTGTTCTTCGTGTA 987575 25 100.0 39 ......................... GAACCCAAAATTAATGTAAATATTCCAGACACAATGAAA 987511 25 100.0 40 ......................... ATTAATCTGTCATTTTGCACAATTTTCGCAATTTATGCAA 987446 25 100.0 38 ......................... TATCCATTTTAGTTAGGTAAAATTCCTTATCTATTATT 987383 25 100.0 39 ......................... TTAAATATTTCTTGTAATTGGGTCTCTAACGAAACACGT 987319 25 100.0 39 ......................... TGTTTTTTATGGTATCCATTCTTGTATAGGAATAGAGCG 987255 25 100.0 39 ......................... AGTACTATCTATAATGCAACATACTTCTCACACTTCAGT 987191 25 100.0 35 ......................... TTCTCATCAACAACATTTTACCTAGGAATATTTCC 987131 25 100.0 40 ......................... TTACAATGATAAACGTCTAGTGTTGGAAAATGAGATAAGG 987066 25 100.0 43 ......................... GTTTTAAAAGCTTTTCTGTGTTTACTCCGCATATCGTTTTTGG 986998 25 100.0 41 ......................... AATTCTATAGTTTGTCCGCTATAATTCTGTATGATTGAATC 986932 25 100.0 38 ......................... TAGCATTTTCGAAATCTTGCAAACTGATGAGGAAATTT 986869 25 100.0 38 ......................... TCGAAGTGGTCCCGTAATTCCTCAAAGCTTCTCACTGC 986806 25 100.0 39 ......................... AATATATAGCTATTTAGTTTATAGTTATAATATATATTG 986742 25 100.0 39 ......................... GCAACATATTACTACTTGATACTATATGTGCATTTGATT 986678 25 100.0 39 ......................... ATACTCTGGTAGCTTTAAGACAATCACAAAACTTGACGA 986614 25 100.0 39 ......................... AGTGAGAACCCATCCGCTTGGCACCACACCTACCCATCC 986550 25 100.0 39 ......................... TTGCGCAGCGGCATCAGCTAGACATTTAGCGTAGTCTCC 986486 25 100.0 40 ......................... CAATATCTTTTAATTGTTTAAATTCATTTCTGTTGCAACT 986421 25 100.0 38 ......................... GTTTCTCTGCCAGTAGCACACCCCTCGTTATATATCTC 986358 25 100.0 39 ......................... CTTATTTGCTTGTCTGAGTACTTCGTCAAAATCATCCAA 986294 25 100.0 41 ......................... CTAATTTGACGGTTGGGATAGAGCGAACTTTTTATCTCAAT 986228 25 100.0 39 ......................... ATGGTTTGTGTGTTCGGTGGGACTCCTGGCTCTCCTCGT 986164 25 100.0 40 ......................... AAGAACATACAATTTTTGATATGTGTAAATACATTTGATG 986099 25 100.0 40 ......................... TTCTGGGCTTCTAATATCTCTGCCAACCTCTGTAGAATTC 986034 25 100.0 43 ......................... AGAGGTTTTAAATTAAGGGTTGGGGACTGTGACCCCGTCCCCA 985966 25 100.0 41 ......................... ACTTTGTAGAGCTTTTATATGCTCGAGTGCTACATATCTGA 985900 25 100.0 40 ......................... TTCATAGGGCATCCCGCATTGGCTAAGTTACTATCCCAAG 985835 25 100.0 39 ......................... ATAATTTAGAAGAGTTGGAAAATGTTTTTTTAGCATTAA 985771 25 100.0 38 ......................... CTTATTGCCTTAGCCATCTCGCTAGCTGATGAGAATTG 985708 25 100.0 39 ......................... TCATAAACTGAAATATCTCCCCCGTCTGGCAATAAAATT 985644 25 100.0 73 ......................... TTCTAGCTTTATCTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 985546 25 88.0 39 A.A...A.................. TGGGGTATTTCAGTATTATACTCCAGCAAACCATGACAT 985482 25 100.0 41 ......................... ATTGATAAATGGCACACAGTTTGCATCTCGATCGAAAACAT 985416 25 100.0 40 ......................... ACCTTTGTCTCTGGGATATTAAGGATGGCTTCAATTGCCT 985351 25 100.0 40 ......................... CACCACGCTAAACAACTTTCGCAGTCGGGTGCCTCGCAGG 985286 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ========================================================================= ================== 45 25 99.7 40 GATAAATCCACAAAGGAATTGAAAG # Left flank : TTCATCAATAGAAGATATATTTCTACTATTTGAGAGTTATCCTATACTATTATGTGTTTTTATCATTTTAAATAATTTTTAGTATTACGTCGTGGGATTAAATGTAAAATTTATGTGCTTATAAATCTCTTTAAAAAGATAACTGTTCCTTAAAATGAAAAGTAATCAAAAAAGGTAGGGTTAGAATAAAACAATAATTTACGATATGTAACGAATCTAGTTAAAGTTCGTCCAATAAATATAACTATTGAAGTTCGAGTTGATTAAGGAGTTTAAAAGTGTAATAGTTCGAGTCTAGATGCGACCGAAACGAATCGTTATGAAATAATTGAACGTATATAAATGTTAACCCATGTTTCAATTAAACAGAAAATCCTTGCGACCACAATTTGTTAAATTAATTACAACTAAAATTGGTCGCATGGTAGAAAGACGAGAGAAATGAAAAACTTATAAGCAAGAAACGAGAGATAAGGAAATAGAAGTATAAAAATACACCA # Right flank : AATGAGAACTTTTAATTATATAAACTGAACCTATATTCTTGATAAATTCTTGAGAAAGTTGAAGGTGTTTCTCTTATCTTTTAATCCTCTCGCTATATCTCCTATAGAGTGGAATATTCCCAAGGGAAGTCCATTAGTTGGTCAACTTTTCTATTATGTATATCTCCTATATAGTGGAATAATGTTTATTATCTATGTTTGGTTTTTCTTATAATGTGACAAGGTATTTAAGGATAGATCCATTGACACTTTCAGCAGTCGCTAGTGTTTCGGATTCAGATAGGGAGCATATAATTAATGTTGTTCGTAATATTGTGAATAACGTCAAGAAAAAGTATGAAGGGAGGAATGATTGGTCTGGATTTCTAAATGAGATCGCTGATGAAATTATTGAGGCAATTAATAGGGGTTGGGAGTACTATTTTAAGTATTTATTATGTTCTGACGGTAAAGATAACGCTTTCTGTAGAGGTGTGAGTTTAGATGATAAATTGCCAGAT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:0, 3:3, 4:0.99, 5:0, 6:0.25, 7:-0.05, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATCCACAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 8 996515-999999 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045687.1 Sulfolobus sp. E5-1-F chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ======================================================================================================================== ================== 996515 25 100.0 43 ......................... TAAATGATGAGTGCCCAGAACAAATTATACCAATTATTAGTTG 996583 25 100.0 39 ......................... TCATTGTAATAAACAACCGCCGGATAAACTATTATATAG 996647 25 100.0 39 ......................... TTGTATTCATCGTACTAATATACTTCATCGTAGGTATCA 996711 25 100.0 45 ......................... CCTTCGGAATTACAGTTATATACACAAACGCCTACACTATTATCG 996781 25 100.0 39 ......................... AAGTTGTCAAAAAGGTTGCCAAACCGCAATCATTATTAC 996845 25 100.0 39 ......................... AGAATTAAAAAGACAGCAGGTGGATTTATTAAGAAGAAC 996909 25 100.0 40 ......................... ATAAAATTAGGAGGTGTGTGTGAGTCTGTCTTTATTTTGT 996974 25 100.0 42 ......................... GTAATAAAACACTCCTACCCATAATTTATGGGTACCATCCTT 997041 25 100.0 41 ......................... ATACTTATATGCGAAAAGAGTGGTTCTCGGAGAGTAAGGGT 997107 25 100.0 40 ......................... TTAAGTTGGTGGACCAGCTCGTTCCTCTGATAAAACCTAT 997172 25 100.0 39 ......................... GCTATTCAGTCCAGTTTCAATTAGAGATGTGATTATAGC 997236 25 100.0 40 ......................... ATATACTCTGTTCTCTGTATATTCATTTTTGAACGACATC 997301 25 100.0 40 ......................... AATTATTATAAGCATATTGAGAAATTGCAGAAGGATCCAA 997366 25 100.0 40 ......................... CTGACTTGTAATGGTACCATAACGCCAACAGTTTTTCAAT 997431 25 100.0 41 ......................... AGAACGATTGTTTGACGGCCGAGTTTAACCTAACGACGATT 997497 25 100.0 40 ......................... AGAAAATCAATGTTCAAAATCACAAAGAAAATATTTGTTG 997562 25 100.0 40 ......................... TATAACTTCCTCGATACTAATCATTCTCTTTCACCTCTTG 997627 25 100.0 40 ......................... CTTAACGCATTTAGAGGCAATGCATTAAGTAAAATTAATC 997692 25 100.0 38 ......................... ATATTGCCGAATTAGCCTTAAATATCTCATCTAGGAAG 997755 25 100.0 38 ......................... TTTGCTACCAGTTTCATCAAATTCACATAATAGTCTAG 997818 25 100.0 39 ......................... TCATACATCCTCACTTTCTTGCCGTTCAAATATATTTTC 997882 25 100.0 40 ......................... TTTGTTAGCTCTAAGTGAAGTCGCAACTTTTTAGTTTCGG 997947 25 100.0 41 ......................... GGTCTTGCACCCGATGGGAATGCTATTATTCGCCTGATTCT 998013 25 100.0 36 ......................... AATCCTTATAATTATTATATTAATTATTGCCTTCGT 998074 25 100.0 39 ......................... AGATAAAAACAACATCTCATTTTTTACAAAACTATTATG 998138 25 100.0 39 ......................... AAGTTGATGCTAACATTGCCAAATCCATCATCACCAGAT 998202 25 100.0 45 ......................... GAGGTACCTAACACATTTGAGGGAGTGTTCATGTTCAGATAGGGT 998272 25 100.0 39 ......................... AAGATTGAAAGGAATTGCGACAGTGAAACTAAGGGATAG 998336 25 100.0 40 ......................... TAAATTTTTGCATAAATATTATAGTTTCTATCCATCACAT 998401 25 100.0 38 ......................... CTTATGTTCATAATCTCAATATCTAATTCTGTCAAATC 998464 25 100.0 44 ......................... CTTACGGGGTAACCCCCGTTATATGCCCTATGGCTAGCTGAAGG 998533 25 100.0 40 ......................... TTATATATTCTAACCCTTCTTGATAAAACCCTTGGATTGC 998598 25 100.0 42 ......................... GTACTTGTTCCCTTCAACACCCATCCGTGGGGGACCACCCAT 998665 25 100.0 40 ......................... ACATATGTCTCTACGATTGTTGATCCAAGAGTTGTGATAG 998730 25 100.0 39 ......................... TGGACTTCCTTATGCCAATATGCCCACTGTAATTAAGAA 998794 25 96.0 39 .......T................. TACGTCTACTTCAACTAAAGATATAAAAGCTTTTCGCTT 998858 25 100.0 43 ......................... GCAATAATCTCAGTGTATACTCTTTCGCAAACTAAGTACGCAT 998926 25 100.0 38 ......................... TAAGAATTGCCTAACAATTCGTTGCACAGCATAATCAT 998989 25 100.0 40 ......................... CACAAAATATAGCGATATATTACACACCTGTAACACTATC 999054 25 100.0 41 ......................... GATTATCATTCATCTAACGCCGTCAACACCAAGCCCACCAC 999120 25 100.0 41 ......................... AAATAGATGCTTACTATCTCCAATGCTCTGGGGGAGATGTT 999186 25 100.0 40 ......................... TCAAACGGTGGCATCAGTTGGTGGATAACGGGTGTACCCA 999251 25 100.0 39 ......................... GGCCACCACTCCTCTCGCAAATTCAGTTATAGTTAATCC 999315 25 100.0 36 ......................... TTTTTCCACAACTACCGTATTTTCTTCGATTATAAT 999376 25 100.0 40 ......................... TCGTCATACACATGGAGCCTTGCATACTCTGTGTAGTTAG 999441 25 100.0 39 ......................... CTATCTCCCTCAGCAGTAACAATGTAAAAATAGCGATAG 999505 25 100.0 41 ......................... CTAGCCATCTGAATTACTCGCATTATTTTGTCCGATAGCAC 999571 25 88.0 41 ......C..AT.............. ACAATAGTTCTGTATCTGCATCCAATACTGCTTAACACCAA 999637 25 88.0 39 .....T...AC.............. GAGAAAACTAGTGGAGGAGAGACTACATTATATTGTTAT 999701 25 88.0 38 .C.........G.G........... AAATATTGGAATAAAGATAGAGGGAATACTGTTTCTAG 999764 25 88.0 41 ...........G.G.........G. CTTATGGATTAGATTACAAAGCGGCCTCTAATGATAATTTA 999830 25 76.0 120 ....G......T..CT....A.T.. TTGAAATAAATATTCAAGTAACCTAATATTAACCATAGTTAGTAGTCTTGTAATCGAGAATTCGAAAGTGACTAGCATAAATATATTCGATCATGATGCTTACACGATCATTCTCTTTTT 999975 25 68.0 0 T..CT..A.GC..G..........T | ========== ====== ====== ====== ========================= ======================================================================================================================== ================== 53 25 98.0 42 GATAAATCCTAAAAGGAATTGAAAG # Left flank : AACCCTTTTGACTTTCAATTAGTTAAAAGATTTAGCATAATATTATAATATATTGTTATTTTTGATTTTAAATAATTTTTAGTGTTACGTCGTGGGATTAAACGTAAGATTTACGTGCTTATAGATCTCTTTAAAAAGATAACTGTTCGTTAAAATGAAAATCAATCAAAAATAATAGGGTTAGAATGAAACAATTATTTATGATATGTGACGAATTTAGATGAAATCTCTCCAATAAATATAACTATTAAAGTTCGATTTGATTAAGGGGTTTAAAAGTGTAATAATTCGAGTCTAGATGCGACCGAAACGAATCATTATGAAATAATTGAACGTATATAAATGTTAACCCATGTTTCAATTAAACAAAAAATCCTTGCGACCACAATTTGTTAAATTAATTACAACTAAAATTGGTCGCATGATGACTAACCTAAAATAATGAAAAACTTATAAGCAAGAAACGAGAGATAACGATATAGAAGTATAAAAATACACCA # Right flank : TTTGAGGAGATGTGAAAAGGTTTATGTGTAAAAGTAGTGAGTTTTTCATAAGAGTGATCATTCTAAGCCTGTTAATCCATATGGGTTCGCATTTAGAACAATTAACTCTATGCTTAAAATTCAGCCTGCTTACTGAAAAGTCCAATACATTGCTATTTCTGGCTTTAAGAAATTTAGGCAATTGAGAAACTACAAGTTAAAGAGGATTGCTAATGATAGCAGCTTACTCCTTGGTTTGATGACGAGATCGGTGATCAACACTAAAGGAGGAAGAAGTGAATATTTTCATACTCCAGTATATAAGCACTTAATTTTGTCAAGGATTGGATCTAACTAACTATTCTCGTCTTTCATACTCCAGTGTATACGCAGTGAAGAATTATTCACTGACTATCTGATATACTTTGAATCACTTTACCTAGAGTCACTTAAACCTTAAATACCTAGACGGATCACCCTGAAAAAGATTTGAATAAGATGAATAATTTACGCGTGTACTA # Questionable array : NO Score: 9.02 # Score Detail : 1:0, 2:3, 3:3, 4:0.90, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATCCTAAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.00%AT] # Reference repeat match prediction: F [matched GATTAATCCCAAAAGGAATTGAAAG with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-2.20,-2.20] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-27] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [9.41,0 Confidence: HIGH] # Array family : I-B [Matched known repeat from this family], // Array 9 1013402-1008356 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP045687.1 Sulfolobus sp. E5-1-F chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================= ============================================== ================== 1013401 25 100.0 39 ......................... TCAATACGCTTTACTAGCTTGCCGTTGCGATAAAAACAA 1013337 25 100.0 39 ......................... CAAATTTGTCTACTACAACACCACCAAAAACAAGGTCAG 1013273 25 100.0 39 ......................... TATTTTCTGATTTTCGTTTAGTTGTTCTTCTTCTTTTTT 1013209 25 100.0 39 ......................... AGTTATTGCAACTAAAGGCGGTGCATGGGTAGAATATTT 1013145 25 100.0 40 ......................... AGAATCATCCCAAACGTTTGTGCAAAGTATTGTAGATTAA 1013080 25 100.0 39 ......................... ATATATTTATTTGAAAGTTTATCAGTGTCGGCCACTTCC 1013016 25 100.0 37 ......................... ATATAATCTAGGATTGAGATTGCGGTAAAAACACCTA 1012954 25 100.0 40 ......................... CTAGTAATGGACAAACCCAAACATTTCAGTTTATTCCTCT 1012889 25 100.0 38 ......................... TTTTTTACGTCTTGAGTCGTACTGTGTTCGAACAAATC 1012826 25 100.0 35 ......................... CTGGAATAGGGGAACTATTTGTTACGGTTACATTC 1012766 25 100.0 41 ......................... AAAGTTGTGAGTTGTTGTGATTGTAATAATGTATTTTCTTC 1012700 25 100.0 38 ......................... AACTTCCCGAAGCGGGAACACTTTGTGAAGACCATAGA 1012637 25 100.0 39 ......................... CCCACCATACCCAGCACCATTGAGAAATAACATACTACT 1012573 25 100.0 41 ......................... AACTTATATGGTTTGTGCTTAAGTAAGAGTTGTTCAATTTT 1012507 25 100.0 40 ......................... TTGTTGTGCGTTATTAAGAATCTCAACCAACTTGTTAAAG 1012442 25 100.0 39 ......................... AGACCACATATAATTCCAAATATTCATTTGAGACTAGAT 1012378 25 100.0 38 ......................... TCCATCTTTTGCGTATAGAAAAAATACAAAGTTTTCAG 1012315 25 100.0 40 ......................... AAATTATTAGCACCGTTGTTACTACTTGGATGAAAACTGA 1012250 25 100.0 40 ......................... AATTTCCACGATAGTACGATTTATCCCTTGGGGTGTCGTC 1012185 25 100.0 39 ......................... TCAGCAGCATTTGGATAGAGATTCTCGTTCTTAAGCAAG 1012121 25 100.0 38 ......................... CACTAGGGTTTGCCGCGGCTGGTTTTGGTGCTGGCTAT 1012058 25 100.0 40 ......................... TTGTAGAACTCTAATATCAGCTTATTGTTTCTCTTCTTAA 1011993 25 100.0 39 ......................... GTTTGTACTTTGCATCTACTGCACTGATGACATCGTCCC 1011929 25 100.0 39 ......................... TTCTCTTCTGTTTTCTTTCCCAGAAAACTCTTCTCCAAA 1011865 25 100.0 39 ......................... TGTATCACGTTATCAAACATGCATATATGTATAATCCTT 1011801 25 100.0 40 ......................... TATGAATATGATTCTATCCAAGCGTAAAGCGGAGTATTAC 1011736 25 100.0 39 ......................... GAAATAACGCCAGATAAGATAAAGAAAAGACATGAGATT 1011672 25 100.0 39 ......................... GCGATAATCAGTGCATTTACTACCGCAGGAAATGACATT 1011608 25 100.0 39 ......................... CTCATATTGTGTAATTAATTCTGTTTGGTCTGGATTTAG 1011544 25 100.0 39 ......................... TATTACTCACCCGCATAGTCCTCCATCGTACCTTCTATG 1011480 25 100.0 42 ......................... ATATTATCAAAATGGTAACTTCCAGAATCTTAACGATGTCTT 1011413 25 100.0 39 ......................... AGCCATAACGGCATCAATTATCGTCTGTAGATCGTTTAG 1011349 25 100.0 38 ......................... TTATGGTTATATAGCGTAGACTTTCTTCCATGAATATT 1011286 25 100.0 39 ......................... ATACAGTTCTATTTCCTCATCAGTTTCATAAAATCGCAA 1011222 25 100.0 40 ......................... TTATCAATCCTCTTAATCATGAAGAAAGGAATAGCCTTTG 1011157 25 100.0 38 ......................... AAGACTGACCTAAAATTACTACTTTATCGCCCAAATAC 1011094 25 100.0 38 ......................... AGTAGTTTTAGCGGAGACAGTGTTTACTTGGGTGGTAC 1011031 25 100.0 39 ......................... AAGCCTTTAGGAATACCAGTGGCTTGTACTATTATGTCG 1010967 25 100.0 42 ......................... CCAAGAAAAGGCCCCCCACGGCACTCAGTTTCCCATCCTTTG 1010900 25 100.0 39 ......................... TACATCATTCCCACCATCACCAAATCAAGGGTGGTTTGT 1010836 25 100.0 40 ......................... ATCTCAGCTAGGACTTGTTGGAAATTCTGCGGAGCGTAAA 1010771 25 100.0 35 ......................... TTTGGCTTAGCGTCAGTGCTAGTTAGCGTTTTTTA 1010711 25 100.0 42 ......................... ATATAATGTAGGGCAAAAGCTAGCGGGAGTATGGTGAGTTAA 1010644 25 100.0 44 ......................... AGAAACCACTACCTCCTCCAAATCCATTAGCAAACGTCAAGACT 1010575 25 100.0 39 ......................... TTATCGTTTCTACTCTTGCTGTAAAACTTTTATTATCAA 1010511 25 100.0 40 ......................... CGATACTGTTGAGGCTTGTTTCGCAAACCCACCCCATTTC 1010446 25 100.0 37 ......................... TAACTTACAATAACAGATTTCAAATACGGCAACCAAA 1010384 25 100.0 40 ......................... ATGACGCTGTAGCCGAGGGTACTGAGCCTACAACGGCTTT 1010319 25 100.0 38 ......................... TATACCTCTGACTTATCTTCAGTTAAAATTTGGGTACT 1010256 25 100.0 39 ......................... CTTTTTACGCAAAAAGCAAGTTCCAAACTTTAATTTTTT 1010192 25 100.0 39 ......................... CTTTTTACGCAAAAAGCAAGTTCCAAACTTTAATTTTTT 1010128 25 100.0 42 ......................... AATCTTAAACTTCTATATGTTTACGCCAGTGAGACAACCGTT 1010061 25 100.0 35 ......................... ACTTTTACATCAGTTGATACTAAGTTCAAGTACAA 1010001 25 100.0 39 ......................... AGATAATCTTGTTGATTATAATGACTTACCTGACAAATA 1009937 25 100.0 39 ......................... GATATTACACTGAGGCACCATCGTATGCCAATTTAGTAT 1009873 25 100.0 37 ......................... ATCTTTCTTGGTTTTTTAGAAATATTTAAATATGTAT 1009811 25 100.0 38 ......................... GTCTTCATGCACACCATCCTCCATCATAACGATTTTCT 1009748 25 100.0 40 ......................... CGAATATATTTGCGTAAGTTTTTTTGCTAGAATATATTCG 1009683 25 100.0 42 ......................... CGTTTTTGCGGTCCAATTTTTTTTTTACTTTCAGTCTAGCCG 1009616 25 100.0 39 ......................... AACTTCAAGATAAGCCTTAGGCGATTATTCAATATTGCT 1009552 25 100.0 42 ......................... ACTACAATCTCAGCATTTAACTCACTAGCTAAAAATTCAACA 1009485 25 100.0 38 ......................... AAATGACGGGAAGTGCAGACATTACAGCGAAAGTGACG 1009422 25 100.0 40 ......................... GGGTCTTCATTCCTTTTAAACCTTATTCTACCCTTTATAG 1009357 25 100.0 38 ......................... TTTGCGTAGAAATTCGGCAACTCCAGCTCTAAGATACT 1009294 25 100.0 39 ......................... AACGCTTTACAACATTCACACCATCATACAAAACGTCAT 1009230 25 100.0 42 ......................... TTTAAGAGATACAGGCTTATCTCTGAACAAGTTTCCAAAAGA 1009163 25 100.0 39 ......................... TCTCTTTCGGGTCTAGTTCTATCTCGATTTTCGGATTTT 1009099 25 100.0 41 ......................... TAATTCTATAGTATAATTCATAGTTTGAAATATATGTTTCG 1009033 25 100.0 39 ......................... ACTTTTTATATTCTTCCCTTATTATTGGCAACAACACGT 1008969 25 100.0 38 ......................... CTCATTGTCTATCACCTGGATTTTTTCCATCAAGTTAC 1008906 25 100.0 39 ......................... AGCGTCATATACTAAATTGGCATAACTGGGTGCCTCGGT 1008842 25 100.0 46 ......................... GTTGACAAAGTTATTCCAATCTTCCAGTGACAGATACGTTAATGGT 1008771 25 100.0 38 ......................... ATTAACTTTTTATTTTTAGGTCCGCTAGCATCAATAGC 1008708 25 100.0 40 ......................... TGTCTCATTATTGCTGTCTTTTGTTGTGGCTGTTATCCCT 1008643 25 100.0 42 ......................... CTCTTGTTACTGTTGTGTCAAGCGCCACAGCATCATAAAAAC 1008576 25 100.0 42 ......................... TGCACAAAATGTTGCTAACAACCTTGGAAGCTCATTAATGCC 1008509 25 100.0 40 ......................... GAATATCTTAAACTATAAAGACAATCTCTTTTTTATCAAT 1008444 25 100.0 39 ......................... ATATTTACATTTTGTTGGTATATATCTAATGTTATCTTA 1008380 25 100.0 0 ......................... | ========== ====== ====== ====== ========================= ============================================== ================== 79 25 100.0 39 GATAAATCCACAAAGGAATTGAAAG # Left flank : TTCTCGAATAAGATGACTGCATGAGAACACTCCCAGTCGTCCTATACTATTATGTATTTTTATCATTTTAAATAATTTTTAGTGTTACGTCGTAGGATTAAACGTGAAATTTACGTGATTATAAGTCTTTTTAAAAAGATAACTGTGCGTAAAAATGAAAGACAATCAAAAATAATAGGGTAAGAATGAAACAGTTATTTTCGATATGTAACGAATTTAGATGGAATCTCTCCAATAAATATAACTATTAAAGTTCGAGTTGATTAAGGGGTTTAAAAGTGTAATAGTTCGAGTCTAGATGCGACCGAAACGAATCGTTATGAAATAATTGAACGTATATAAATGTTAACCCATGTTTCAATTAAACAGAAAATCCTTGCGACCACAATTTGTTAAATTAATTACAACTAAAATTGGTCGCATGGTGGAAAGATGAGAGAAATGAAAAACTTATAAGCAAGAAACGAGAGATAACGATATAGAAGTATAAAAATACACCA # Right flank : AATAATTCATCAAAATTAATATTCACGTTAGGGTATTCAGTGATAGTTTGTTGACTTATTGAAAATTTCCCTTTTGACCTTTTAACGGCATTTTTAAACATAAGTATTATACACATATATTATATAATTTTCTTTTTATTTTTTATACACATATATTCCGTCTCTATACGTTACTACATTATTATTCTCAGACGTATTCTTATACGTGAACATTACATCGGATCGTTAATTTAAATAATAAAGTGGAAAGATATTCAAGGGATCAATTTTTTGACAATAAAACTGTATAGGCTAATAGTGAAAAATTAAACGAGTTGTCTTTTTCTCAAACGCGGGCTGGGTCTTAAGCCCGATCCTATCACTTTTCAAATTTTTCTCAAACTATTCCTCATGTCATGATATAATGCGTACTGCTAATCACGCAAATTAACACGAGCTTTAAAAGATGCACATTGGAGGAATTTAGACTGAAGTCGACTATCATTTATAATTATATATAT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:0, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GATAAATCCACAAAGGAATTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-2.40,-1.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [75.0-73.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.5 Confidence: HIGH] # Array family : NA //