Array 1 25-540 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUCL01000026.1 Clostridium sp. AM22-16AC AM22-16AC.Scaf26, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 33 ............................ CTGACGGAGCTGTTGAGGCACTTAAAGCGTTGT 86 28 100.0 33 ............................ TAGAACGGACCTCCCGGACCGTGCGATCCGGTA 147 28 100.0 33 ............................ CACACAATAGCACAACGGCGCGCAGTTGTCAAG 208 28 100.0 33 ............................ TGCTGAGAGATTCCGGCGCTCGTTATTGTAGGT 269 28 100.0 33 ............................ CCACTCAATGATCGTCTCGATCAGTCGGCCAAA 330 28 100.0 33 ............................ TGTAGGTTCCGGAGTCGTGCAGGCATTAACGCC 391 28 100.0 33 ............................ TAAGTAGAAGCGTTCTTTCCATTCCTCCAAGTA 452 28 100.0 33 ............................ TGCTGGCGAATGCTTTTAACATCGAAGATCCAA 513 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 9 28 100.0 33 GTATTCCCCGCGCAAGCGGGGGTGATCC # Left flank : AAACATATTGACCATCTAACTGCAG # Right flank : CCGTATTAAAGCATGGGCCTCTAAAAAGAAAAAATCCATCCCCCCATTGCAATTCTCCGCTATTTTGCGCATACTCATAATATGAGTGGATAGATGCAGCCGCTATGTGTTGGGCATTTTGCCTGCCGTAGTAGAACGGGGCACTATCCACTCTTTATGCTTATGAACAATCAATAGCTCTCACGCGGACTCCCGCAGCAGCCGGATCAGCTCCTCCATCGCCGGAAGGGTCTGTTTCCCTTTCAATGTAACGATGGAATAGCTGGTAGTATCATCCGGATTACCGATCCGGAAGCAGCGGACAGGCTTTGGATAGTGGAAATTTTTCATGTACTGGTAGAAGTTGAAAGCGATGCCATAGCCTTCTGCTGCGAGCTGACAGGCAGATTCAAGATTTTCAAGGAGAAAGACCTGTCCCGGTTCGGCGTGATCATAAGCAATGGCAAGGTCTGTGTAGTGTCTGGAGGACTGCTCCGGCTTTTGCAGGATAAAACGTTCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCAGGCGGGGGTGATCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.80,-12.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 74994-74662 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUCL01000002.1 Clostridium sp. AM22-16AC AM22-16AC.Scaf2, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 74993 37 100.0 39 ..................................... AATTCCCTGATTGAGCATATTTCCTCCTTCCGGCGCCTC 74917 37 100.0 37 ..................................... ACTGTAACTAAAACAAATTTCTTCATTTGTATCCTCT 74843 37 97.3 35 ..................................C.. AATATTCCCAAGCACTATAGTAATCACAATTTTTA 74771 37 94.6 36 ..............C...................C.. CTTTTAGAACTGAAAAATAAGACGGTACCCTGCCTT 74698 37 91.9 0 ..............C....T..............C.. | ========== ====== ====== ====== ===================================== ======================================= ================== 5 37 96.8 37 GTAGAAATGAAGGTTGCCCCTTTCAGGGCATTGATAC # Left flank : CAGGAGTGCCGTGAAAATCTGGAAAAGGATTTTTGAGGTGTGTTGGCGAGGGTACGCGGTGAGTTTCCGGACAGGAGTGCCGGGGATGCGGGGATGGTTCCTCTAACCTCCCGGGAGACTGCTAAGGGCAGAAAATCGACGACACAACTCGCTGCGCTCAGACAAGTGTCATCGATTTTCTAACGCAGTCACCCGCGAGCTAAGAGGAAGCCAGATCCCCGGATCATGCACTCCTGTCCGGAAGCTCACCGCTGGGAGATGACGGGATCGCAAATAGTAGTCGCAATAATGGAAAATAATCTTCTTGTGGAACTGGAAGAAGTCTGTTATAATGGGGTCAGCTGAAAGCGAGAAATTACCTTCGTTTCTGCGACAAATATGAACAAACTGTGAACATGCCAAAAATCACCTTCAAAAAAGCCTTTTTCAGAATATTCTGGAAAATACTTGCAAAAACGGGTCCGCAAAGCCTTTATTTATGCGGGTTCCCAGAGGCAAGT # Right flank : AATCCATTGTTTGCTTGATTCTTAATCATTTTAAGCTAGAAACGAAACTCGCCTCACCCATGGCATACAGACCAACCACAAAAAGACCAGTGAACTTTCCCATCAGATCAGAAAGCTCGCTGGTCCTTTTTTGGTATATTCCCGGATACGCTGACAACAAATCTTTGTCAAAAACAGAATATTATATTGTTTTATTTTTATGGTATGCCATGATAGAATGATTTTGTACATAAAAACAGTAGTTTTTAAAACCGGTTCTGTACAGATTGAACAAAAAAACTATATGTCATGATACCAGAGTCAAAAGGTCGGAAAGCCACTGCAGTCTTGCTCAAAAGAGGATTTCTAAACTTATGACTCATCAAAACAATATAAGGGGGTACATCCATGAACTCTATGGTTATCGCATTGCTGATCCTTGCAGCTACGATCGCACTCTTTATCTGGGAGCCGATCCCGATCGTGGTAACTGCGATCGGCGCATCAATTCTGTACGCGTA # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:0.92, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGAAATGAAGGTTGCCCCTTTCAGGGCATTGATAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:54.05%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.80,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.41 Confidence: LOW] # Array family : NA // Array 1 420-25 **** Predicted by CRISPRDetect 2.4 *** >NZ_QUCL01000027.1 Clostridium sp. AM22-16AC AM22-16AC.Scaf27, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 419 29 100.0 32 ............................. AACCCCTTTTCTTTTTTCCTTGCAGAGACTGC 358 29 96.6 32 ............................T ACTTTGAGATGGAGGATGGAAACATTGAGTGA 297 29 100.0 32 ............................. AAATGGAGCAACGATAAAACGGCAAAGTGGAT 236 29 96.6 32 ............................T GCTCTTATATAGGCCCGCTGATATGTAGGGAA 175 29 100.0 32 ............................. GGATATTTCAGCGATTCTTGTATCGTCCTTTT 114 29 100.0 32 ............................. ATACTCAACCGCTTCTGATTTTCTCCATGATG 53 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 7 29 99.0 32 GTATTCCCCGCGCAAGCGGGGGTGATCCC # Left flank : TCATCAGATGAGATTATTGAGTTGGCGGCGATCAGAATCATTAACCACAAAATTGCAGACCAATTGGAGGTTCTAGTAAAAACAGAAAAAGGAGTTCCAAAAGTAATTACTGAACTTACGGGGATTACAGAGGAGATTCTTGAGGAAAAGGGGGTGGTTCTTTCCTCGGCGATGGAGAAGTTCTGTAAATTTATTGGAGAAAGCGCAATAGTTGGACATAATATCGCATTTGATCGCAGCTTTTTAAAGGAGGCTTGTCGAAGAACCAATCGTATGAATCTGAATAATCCAGCAAAAGATACATTAGATCTTGCGAGAAGACGAATCGATGATATTGATGATTACAAGCTTCATGCACTGGCAGACTATTTCCAGATAAAAGTTGAAGAGGAACATAGGGCATTAAGTGATTGCATTACGACATTTCAGGTGTTTGAGAAACTAAATGAAATTTAGATGTGGAGATTGGGAAAAGGCTGTAAATATGGGATTTTTTTAGT # Right flank : CGTCTCCAAAAGCTACCAGAGCCTT # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGGTGATCCC # Alternate repeat : GTATTCCCCGCGCAAGCGGGGGTGATCCT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CTGCTCCCCGCGCATGCGGGGGTGATCCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.20,-13.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [20.0-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.78,5.14 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //