Array 1 94515-97002 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWU01000005.1 Pasteurella multocida strain HND19 Contig005, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 94515 28 100.0 32 ............................ ATGACGACGAATTAAATCATCATCAGAAACAA 94575 28 100.0 32 ............................ TTGACTTCCACCTGATCTTCAATGAGCACTTG 94635 28 100.0 32 ............................ TTGTGTTCTTGTTGAGATAATAATATGCCTTC 94695 28 100.0 32 ............................ TGTAAGAACGTACCAACTCTTTCATATTTTTT 94755 28 100.0 32 ............................ AAGACAGGGACACGTAGTGTTGAATACGTATA 94815 28 100.0 32 ............................ ATTTTCTCAATTCACGCATAATCATTTCAAAT 94875 28 100.0 32 ............................ ATTAATATTTGGCGCTGTGATTGTGCTATTCG 94935 28 100.0 32 ............................ TCTCTATTCTTAACTCCGCTATTTTTATCACG 94995 28 100.0 32 ............................ TTAATTCTATTAACTTTAGTTCATGCAAGTAG 95055 28 100.0 32 ............................ ATTAGCCTGCACGTTAACGTGACTAACTTTAT 95115 28 100.0 32 ............................ CGTTGCGATGTTGCCGAGCTCGAGTTTAGGTT 95175 28 100.0 32 ............................ ACCACTTATCGGGCGCGATTTTCTTCACGGAA 95235 28 100.0 32 ............................ GCATTTTTCAGCCACTCTTGCCATTCAGTATT 95295 28 100.0 32 ............................ AAGAACAACACCATATATCGCATGACTTATGC 95355 28 100.0 32 ............................ AAGTAATGTTTTCCGATCTTCTTCGGTAACTC 95415 28 100.0 32 ............................ AACTTCAATTCAGATGCCAACACCGCCATATT 95475 28 100.0 32 ............................ ACACCAGTCGATCCGGACAAAAACTTACTCAT 95535 28 100.0 32 ............................ CTTCCGATTTTTGATAGTCAAAGACTACTGAG 95595 28 100.0 32 ............................ ATCTTTTTCATACGTTACAATCTCAACACTTA 95655 28 100.0 32 ............................ TATGTTTAAAGTATCTGATATTTCGTCAGAAA 95715 28 100.0 32 ............................ GATATGTCAGAATGAGTACTGCCGGTATATCG 95775 28 100.0 32 ............................ AATTTATGCAACAACGATCAGCATTGATCCAT 95835 28 100.0 32 ............................ ACAAAAAGAGGCTATCGTGGATAACGGTGCTG 95895 28 100.0 32 ............................ TTATAAAAATTCTCAAAATACAACTTGTAGAG 95955 28 100.0 32 ............................ ACTGCTGACTAACTGCTCAGCTATTGTTTCAA 96015 28 100.0 32 ............................ TTTTTGAAGTGCTCAACAATAACGCTGCTGAC 96075 28 100.0 32 ............................ ATTGAGTCAAAAGCCGACATTAAAGCCTTAAT 96135 28 100.0 32 ............................ TTTTAATCGTTCCACGGTTGAAGTTAAACCTT 96195 28 100.0 32 ............................ AAAATCCTGTTCTATTGCTAGCCAATCAATGT 96255 28 100.0 32 ............................ AAGGTCTGCTAAACCTGCGGCAGCGGAATAAC 96315 28 100.0 32 ............................ TCTCGAAAGCTTCAGTGAGCGGCTTAACTAAA 96375 28 100.0 32 ............................ ATTGAGTCAAAAGCCGACATTAAAGCCTTAAT 96435 28 100.0 32 ............................ TTTTAATCGTTCCACGGTTGAAGTTAAACCTT 96495 28 100.0 32 ............................ AAAATCCTGTTCTATTGCTAGCCAATCAATGT 96555 28 100.0 32 ............................ AAGGTCTGCTAAACCTGCGGCAGCGGAATAAC 96615 28 100.0 32 ............................ TCTCGAAAGCTTCAGTGAGCGGCTTAACTAAA 96675 28 100.0 32 ............................ ATCTCACGAATGTGAAACCCGCCCACATCTTC 96735 28 100.0 32 ............................ AAACTGTCTAAGACTGCCGTAAAATTTAACGT 96795 28 100.0 32 ............................ ATCACCATCATAAGCATCAACATCGTTAATGA 96855 28 100.0 32 ............................ ACGCTTGGATCTGCAACCACTTGTCGCGGGCG 96915 28 100.0 32 ............................ ACCAAAGAGCGGTGTTTTGGCTTTTTGAGCTG 96975 28 78.6 0 ....................TG.CA.TT | ========== ====== ====== ====== ============================ ================================ ================== 42 28 99.5 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGCTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAGCAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTGCGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTATCGCAGAATAATCACATCTAAATTACTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTTTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATCGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTCA # Right flank : TGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATAAGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTGGCACCATAGAGGGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTTACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTCTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAGGGCATCGTTTGT # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 15753-16140 **** Predicted by CRISPRDetect 2.4 *** >NZ_PPWU01000006.1 Pasteurella multocida strain HND19 Contig006, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 15753 28 100.0 32 ............................ TCGTTACCTGCGGGCGTTCGAATACAGCGGGA 15813 28 100.0 32 ............................ GTTTAAAGCGCCTGATTTTTATCAATATCCAA 15873 28 100.0 32 ............................ TAATGGCGCACCAGTGTCACAAGAGTTCACTT 15933 28 100.0 32 ............................ TTTAATTTTTAAAAAAGCGGTCACGCCGGAAG 15993 28 100.0 32 ............................ TTCATCGTGGACTGTTCAAAAGAAGTCGAGAA 16053 28 96.4 32 ..............G............. ATATCTGCAAAGTTCGTCACAAAGACTGGAGT 16113 28 89.3 0 ......T...........A.....A... | ========== ====== ====== ====== ============================ ================================ ================== 7 28 98.0 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : TCAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTGGTCTACCGAACACCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACCGTGCCTCACTTTTAATCTCATTGTTAACCCTTTTTTCTTATTTGGAAAGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGTTTTTTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : AACTCATAATCGGAAGAGAGCGAGTTCGAATCGTTCATTATAGACTAGATAGTGTAAACCCTCGCCGGTTTTCAAGACCGGTGTATCCAATGCCGTTAAGCAACCTCATTTAAAGAACAGAAAAAGCCCATTATGCTTATCAGAGAATGGGCTAGATAAAAGGAGAGATTATGCGCAAAACCCCTTATATTCCGTCTTCGGATTTGAAAACCATTATGCATTCTAAGCGGGCGAATATTTACTATTTAGAACATTGTCGCGTATTACTAAATGGTGGACGAGTGGAATATGTCACCGATGAAGGGCGAGAATCGCTTTATTGGAATATTCCCATCGCCAATACGAGTTGTCTTTTGTTAGGCAGTGGTACGTCGATTACGCAAGCTGCGATGCGAGAATTATCCAAAGAGGGCGTCATGGTGGGGGTTTGTAGCGGAGGTGGTACACCATTGTTTAATGGTACAGAAGCCGAAATTGGCTGTGAGTTTTTTAGCCCACAA # Questionable array : NO Score: 6.16 # Score Detail : 1:0, 2:3, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:58.62%AT] # Reference repeat match prediction: F [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-6.00,-5.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [80.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //