Array 1 651910-650884 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCM01000001.1 Trichormus variabilis SAG 1403-4b sequence01, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================== ================== 651909 37 100.0 34 ..................................... ATTGAGGAAGCTGCATTTGCTAAAGATTTCTATG 651838 37 100.0 39 ..................................... AACGAAGAGGATAGTTGCTCTGGCTGTAGTGGTACTGGA 651762 37 100.0 40 ..................................... TAGGGATGGGTGAAGGGGCGGGAGTGGTGGTAGTAGATTT 651685 37 100.0 39 ..................................... TTAAACAGCTTCCTGAGCCTTACTCAAACCATTCTCCAA 651609 37 100.0 33 ..................................... CTTTTACTGGTAAATTTCCCTCTCTTCAATTAC 651539 37 100.0 34 ..................................... ATACTATCCCCTTTCCTACTCATTTTTTAATAAC 651468 37 100.0 37 ..................................... AAGATAAATCCCTAATTCATCAAACAAAACCACAGAA 651394 37 100.0 38 ..................................... GCTGGATACGAAAGCTCCCCCATCCGCTGGACTTTCCA 651319 37 100.0 31 ..................................... TTCATGTTCAATTCGTATGAGATGGACGGCG 651251 37 100.0 33 ..................................... CTTAGAAGTGATCAGGATCGTAATCAGGCGCTG 651181 37 100.0 33 ..................................... CCCGGATCGTAATAGGGAAACGTAATACATTTT 651111 37 100.0 34 ..................................... TATCAAAGCCACTGCACACATCCATGGTGTGCAT 651040 37 100.0 37 ..................................... TGGCCATTCTCGTGACTCATAACGATAAATATTATTT 650966 37 100.0 8 ..................................... TATAGTAA Deletion [650922] 650921 36 75.7 0 .A.....A....G..T-..TAC..........A.... | G,A [650908,650918] ========== ====== ====== ====== ===================================== ======================================== ================== 15 37 98.4 34 ATTGCAATTTCACATACTCCCTATTAGGGATTGAAAC # Left flank : CCAGAAAAAGTACTTAGTCAAAGGACTGGTTCCTTTGCCAACAACTTGATCGACTGCTAGAGCGACGTTCTCATCTAACCAGAGAATTTTTAAAATGAACTTGGTCAATTACACCTCCCGGAAAAATCCGGCTATGACATTACTAAAGTTAGCGATGCTTGCGGCGGGCTACGCCGACGCTTATTTTAACGCAAACTCTGACCAATTGACCAATGATAGTTGGTGATGGATGATGATTTATGGGTGATTTCTGCCTAGAATTTTTTTCCCGGATTGCGCGGGTGGGTGGGTGTTAAAAAACCTGTGACTCCAAAAAAGGCTGAAATCATTTTGTAGCAAGACTTTCAAGCTTTTTTGAGTTTGAATCACCCGCGCACCTTATCCAGACTGGGTTTCAGCCATTTTCAATCTTGACACGATCCTGGAAATCGACTATGATTAGACCATCCGCGCAATCGAACCTTGAAAACCAAATACAGTCAGCCTTTCCGGCTCCTGCT # Right flank : ACAGTCCAAATGCTGGAATATGATGAGGATTACAGTTATCATTTGCTTCCATGACCAAACAAACAAATACAATAGTCATTTTTGATATAGATGGAGTAATCCGTGATGTTGGTGGCTCATATCGCCGCGCTTTAGCAGATACCGTAGAGCATTTTACCGACCAGGCTTATCGTCCCACACCTGTAGATATCGACAACCTGAAATCAGAAGGGATTTGGAATAACGATTGGGAAGCTTCCCAAGAATTCATTTACCGCTATTTTGTCAGTCAAGGAACAACCCGCGCACAACTGCAATTAGATTATGAAAGTATAGTTACCTATTTTCAAACTCGTTACCGGGGTACAGATTCAGAAAATTGGAATGGATATATTTGTAACGAACCTTTATTAGCACAGCCTGGTTATTTTCGAGAACTAACCCAATGTGGTATTTGTTGGGGATTTTTCAGTGGTGCTACTCGCGGTTCTGCTACCTATGTCTTAGAAAAACGCTTGGGT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACATACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:64.86%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [70.0-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 145886-144589 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCM01000012.1 Trichormus variabilis SAG 1403-4b sequence12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 145885 37 100.0 39 ..................................... AGCTTTTAGAATTAGCTGAGGAAGGCTCAACAAATCCAG 145809 37 100.0 33 ..................................... TTTTTCTTTCTCAGGCAATTGATGGTGAATTTG 145739 37 100.0 36 ..................................... CTTTTAAAGCTTCTTCTAGGGCTGACATTGAGAGAT 145666 37 100.0 37 ..................................... CTTAATTCATTAAGGAGAGTAAATTTCATCATGTTTC 145592 37 100.0 41 ..................................... TGAGAAGGACTTGTATGCCCATTTGTACCCAGTCTGGGAAT 145514 37 100.0 32 ..................................... GTGAATATTCTTTTGCCTCTCTTGCTTCTTTT 145445 37 100.0 40 ..................................... TCTATCACTGTAGTATTTTGCTTTGCTGCTGAGTCTATTG 145368 37 100.0 31 ..................................... TGTGAAGCCAAGCCCAATCAGCAGCATCTGA 145300 37 100.0 35 ..................................... CCATCAAATATCCGCTTTCTTTTAAAGCCAAAATG 145228 37 100.0 41 ..................................... ATAAAAACTGACAATGGCAAGGACTACAGAGCTAATTACCT 145150 37 100.0 37 ..................................... TCCTCATCACCAGCAATATCTCTCAGTTCATCCAGCC 145076 37 100.0 37 ..................................... TAGAGCGTAAATTCTTGGGGGATAAATTTCCCCCTTT 145002 37 100.0 42 ..................................... TGTATAATCCTTAATTAATCATCTCTGCATTAAGCCCATCGC 144923 37 100.0 34 ..................................... CACCAATTAAGCCTGCTATTAGCCTTTGAAGCAA 144852 37 100.0 40 ..................................... CAACTATCTATTCATCCTGAATACATTACTTATCCATCTA 144775 37 100.0 35 ..................................... TTAATTACCTCGGCGGTTCGATTAAACTTTCAATC 144703 37 100.0 41 ..................................... AAATAAATGCGACTTTCCAATTGCTTGGGAGGCCGACATAA 144625 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 18 37 100.0 37 GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Left flank : ATGAATGTTGTTGTTTCTTACGATATTTCTGAGGATAAACGTCGTACTAAAATTCACAATATCCTCAAATCTTATGGACAATGGGTGCAGTATAGTATTTTTGAATGTCAGTTAACTGATACTCAGTATGCTAAACTGCGATCGCGTCTCAATAAACTTATTAAGGCAGATACCGATAGCATCCGTTTTTACTTCCTCTGTGCTTGCTGTTTTGGTAAAGTGGAACGCATCGGTGGTGAACAACCCCGCGATGAGACTATTTTCTTCGCTTGATGCGCGGATGGGTGGGTGTAAAAAATCCCGGTGAGCAAAAAATGGCTGAAATCATATCTATACAAGGTTTTCATGGCTTTTCTTTGGTTCACCCATCCGCGCACCTTACACAGCAAGGGTTTCAGCTATTTTCACTCTTGACACGATTCCTGAAATGGACTATCATCAGATCATCCGCGCAATCGAACCTTGAAAACTACATATATATAGGCTTTCGGGCTACCGCA # Right flank : ATTAGAAAAGAGATTTTGATTTGTGACAATTTTTGGGCTATTTGTATCGGAATTTTCTTAAGATTCAACACCTCTGATATTATCTTTAGGTGTTTTTATGCATTAACTGTATCTTCTGTGTATGCCTTAATTGTTGTAAAAACTTTATGAGTTGCGATGTAAACCTATTAATACTTATTGGGCTAAATTAGCAAATAAATACCTAAAATCAACCTCCCAAAGTTGTTGTTTCTAACTTTAGTTAGAGGGTTAAATCTGAGAACTTATCATATGATGGTAACTTATCATACGAACATTTTTCCATTACTTGTGCGTAAGTCTTAAATCAATTAAATCTTTAACAGGAGAATAATCATGTTAGATATTGATGAAATGAGTACAAAAGAGATCCATGATCTTTTGCAAAGAGTAGGACATGGACACCTTGCTTGTGCGCTGGAAGGACATCCCTATGTTGTGCCAATGCAGTATTATTTCGACGAGCCAGATATTTACATCTT # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGAAATTTCATTTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [73.3-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 27231-25555 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCM01000020.1 Trichormus variabilis SAG 1403-4b sequence20, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ========================================== ================== 27230 37 100.0 35 ..................................... TTAAAAAGACCACAACATCAGTCCTGATAAGCATT 27158 37 100.0 38 ..................................... CTGCCAAACCCAGATTTTTCAAGAGCATCATACTGGTA 27083 37 100.0 36 ..................................... GTGAAGACTGCGATTATTATGGTGATATTATTGTTG 27010 37 100.0 35 ..................................... CTGTTGACTCTGTTCAGTTTCTTGAAAAATGCCTT 26938 37 100.0 37 ..................................... CCTTTTGCACTTTTAATGCAAATTACTTTTGCCGAAT 26864 37 100.0 37 ..................................... GTATGCTTATCGGTAAGGATTTGAATGGGTTTGTGGG 26790 37 100.0 34 ..................................... TAACTTTGCTTCTATCGTATTTCTGAAAGTTAGA 26719 37 100.0 41 ..................................... GCTACTCCCTCTTGGAGCGCAAAAGGGAATTTGTCAAGGAC 26641 37 100.0 35 ..................................... ATTGATAAAGGATAGTGATTATGACCAGTCCATAA 26569 37 100.0 34 ..................................... GAGTATGAATTTGCGATCGCTCCCAACCGCAAAG 26498 37 100.0 41 ..................................... AGATCAACATTAGGTCTAACTTTAGATCCTTTTCCTATTAA 26420 37 100.0 34 ..................................... ATTTGAGTTACGTTGAACATTGTAATTATCATGA 26349 37 100.0 40 ..................................... ATTACTCAAATAAACAGAACAATGTTAGAGTATTTTTCGC 26272 37 100.0 41 ..................................... ACCAAATTGAGTAGTTTCATCTTTCAGTCTGTCATATGTAT 26194 37 100.0 40 ..................................... CATTCCAGATATCAGCAGGTTTTTCTGGTTCACTACCAAA 26117 37 100.0 34 ..................................... TGCTAATGACACAATTATGGAATGGTACAAAAGG 26046 37 100.0 40 ..................................... AAACGAGAAAGCCTGGAAAGATGGTATTTCGATATCTCAA 25969 37 100.0 40 ..................................... CTTACCTTGCCAATTACTCCAAGCCTTACGGTAGTTTTCT 25892 37 91.9 42 ..........CTC........................ ACCAACAGCTTCTTGAGCTAACTTTGCAACCGCATCTTTTAA 25813 37 91.9 41 ..........CTC........................ CATCAAATGCTTGATCGCATAAATTATTTTCTACTTCTTTA 25735 37 91.9 37 ..........CTC........................ TTTCTATAAATGTAACGCCTTCGTCTAACGCTCTACA 25661 37 91.9 33 ..........CTC........................ GACAATTAACTGCAACCATTCTTCGTGACACGG 25591 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ========================================== ================== 23 37 98.6 38 ATTGCAATTTTCATTACTCCCTATTAGGGATTGAAAC # Left flank : TACACCCCACATCCCACACCAACCCAGTATATATTGATGAGGGAGTGGTACATTATGGTGTTCCTAATATGCCAGGGGCAGTACCTTGGACAGCAACCCAAGCACTCAACAACAGTACCTTACCTTATGTTGTGCAGTTGGCTAATTTGGGAATTAAGGCTTTGGATGTTAATCCTGCTTTGGCTAAGGGTTTGAATGTGCAGAATGGCCGTTTGGTACATCCGGCTGTACAAGAGGTTTTCCCTGATTTGGTAAGTTAAGAATCGGCTTTTTGGCGCGGATGGGTGGGTGTAAAATTTAGATGGTGCAAAAAAATAGCTGTATCTCTTGATGGGCTTGGCTTTGCGGCTATTAATGTTGATGAACCATCCGCGCACCTTACAGTGACTGGGTTTCAGCGTTTTTTGTTCTTGACACAATTTCTGGAATGGACTATGATGAGCCTATTCGCGCAATCGAACCTTGAAAACCAAATATACAAAGGCTTTCAGCCTCCCGCT # Right flank : CATAGTTTGTATTTATTAACTTTTTTGCATATTTGCTTACGGAACACTACGCGAACGTAGTTCATTTAATCTAATTTCCTAGCATTGACCCTATTTACATCTCTTCGTGATAAAATGATAAAATTTCTTTGCTAAGTGCAGAAATTAAGAGATTATGGAAATAATTACAAGCATTTGATAGAGGAAAATCTCACCCATGAATAAATTATTAGATGAAGCCTTATCTCACCAAGTTGCACAAAGCATCAAAAGTAAAGCTAAAAAGCCTTTTGAAAATGCTTATAAAGCAGCTTTAGCAACCGAGGGTTCAAAGTATGTTCAAGGTTTTTTGGTATTTAGTGGTCAGCCATACAAACCTGTTGAACATGGTTGGATTGAATTAGAAGATGTGATTATTGATCCCACCCTTCCTTATTTGCAAAAAAACCATAAAGACCTTTGGTATTTTCCCGCGCAAAGTCTAACCATCAAAAAGCTAAAAGCAATAATCGACGAATCAA # Questionable array : NO Score: 9.19 # Score Detail : 1:0, 2:3, 3:3, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTTCATTACTCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-5.50,-5.50] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [66.7-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,4.5 Confidence: HIGH] # Array family : NA // Array 1 55663-59630 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCM01000022.1 Trichormus variabilis SAG 1403-4b sequence22, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ======================= ============================================================ ================== 55663 23 100.0 50 ....................... ATTTAAATAGCGCCAATGGCGCTTGTTTTTTGCTTAGTTTCTGCATACCT 55736 23 100.0 53 ....................... GACATCTTTAGGCATGAACACCGGGATTTTATCCGTCTGGTTTCTGCATACCT 55812 23 100.0 52 ....................... TGAGTTTATCCCCGATGAACCAGAATCGCAGCTAGATGGTTTCTGCATACCT 55887 23 100.0 50 ....................... TGGACAGCCTTCGCATTGATTCGGCTGCAAGATTCAGTTTCTGCATACCT 55960 23 100.0 49 ....................... CTAACTTTCGCTGGATGCTCATATTTGATGGGCTTGTTTCTGCATACCT 56032 23 100.0 54 ....................... GATCAAAAGGGATAATTGGAATTCGCACCCAAAATGGGCAGTTTCTGCATACCT 56109 23 100.0 51 ....................... ACCGAATGCGGGATTAATTATTCTAAAGTCCATGTTTGTTTCTGCATACCT 56183 23 100.0 51 ....................... TAAACTGTCGTCACTCTTTCCATTGTGAACGGGGCATGTTTCTGCATACCT 56257 23 100.0 48 ....................... TTGCTCAAATTGTTGAAGCCTTCCAGACGCAGCAGTTTCTGCATACCT 56328 23 100.0 54 ....................... TTCACATACGACCAAGGACTTACACCAATGCCAGCTTCAGGTTTCTGCATACCT 56405 23 100.0 49 ....................... ACTGGATGTAATTCGGGCTGATATCGCACAAGTCAGTTTCTGCATACCT 56477 23 100.0 54 ....................... AACATCTTAGCCCCTTCAAAAAGCCTGTACCACGTTCCATGTTTCTGCATACCT 56554 23 100.0 52 ....................... ACGAAACCAAGTCATTAGAAGCTGATTGGTTCACTCATGTTTCTGCATACCT 56629 23 100.0 59 ....................... AATCACTTGCTAGGGACATATAACCGCTCCTTTTCTTTCCCCCTAGTTTCTGCATACCT 56711 23 100.0 51 ....................... TTTTTTTTCCTTGAGGTGCGCCATCTTTCTGTTCCAAGTTTCTGCATACCT 56785 23 100.0 51 ....................... GGTAAATCAGTGACAGTCATTAACAATTTCGTAACTAGTTTCTGCATACCT 56859 23 100.0 48 ....................... CTTTTCTCGCAACACATCGCTCTTCATCTTGGCTGTTTCTGCATACCT 56930 23 100.0 51 ....................... GTTTCATCAGGTCAATGCTCATCAGAGGAGGATGCAAGTTTCTGCATACCT 57004 23 100.0 49 ....................... ATGATTCCTCATCCGGGATAAATTCCAACCTCAAAGTTTCTGCATACCT 57076 23 100.0 52 ....................... CTCTAAAGCTTTCAAGGGCAGTGCAAGTCACGCCACAAGTTTCTGCATACCT 57151 23 100.0 52 ....................... ATGAAGATTTGGGCTATTCTTATGGATGTTTGTCTACTGTTTCTGCATACCT 57226 23 100.0 49 ....................... GAATAGAGACCCATATGGGTTCCCAAAAAGTACAAGTTTCTGCATACCT 57298 23 100.0 48 ....................... CTTAACCAAAAATGGGATGAGATTGCTGGTAGTGGTTTCTGCATACCT 57369 23 100.0 51 ....................... TCTATTACGTAAAACTATGTCATTTGCAAAACCACAAGTTTCTGCATACCT 57443 23 100.0 50 ....................... AAGAAAAAACATTATGGAATCAAGCTGTAGTGGAATGTTTCTGCATACCT 57516 23 100.0 52 ....................... TATAATAGGATTGATGATTGCACTTAAACGTTTGCTTGGTTTCTGCATACCT 57591 23 100.0 51 ....................... ACCGCCTAAATGGTTTCTTCCTCTTCGTGGGGGCTTTGTTTCTGCATACCT 57665 23 100.0 51 ....................... TTTCTTTACCTTGCGGAGCGCCATCTTTCTGTTCCAAGTTTCTGCATACCT 57739 23 100.0 52 ....................... GGAATAAATATAAATCTAGTATTTGACGGGTGCAATATGTTTCTGCATACCT 57814 23 100.0 52 ....................... CAATCTTCCCCTTTCGGTCAGACAGGTACTGGACTTAGGTTTCTGCATACCT 57889 23 100.0 49 ....................... AGTATTATGCCGTAACAGAAAGCGGTACAGCCTATGTTTCTGCATACCT 57961 23 100.0 49 ....................... GTAAAATGTACGCGAATCGAGCATTTTTACCTCCTGTTTCTGCATACCT 58033 23 100.0 48 ....................... AACACATGGCTGTACCCGGAAAGCCTTCATTTGGGTTTCTGCATACCT 58104 23 100.0 49 ....................... AAGACAAACAACAAGTGAATCACCAACCCAAATTTGTTTCTGCATACCT 58176 23 100.0 54 ....................... TCCCGCTTCTGCGGCGGCGACTACTTCTTTGGCGCGCTCAGTTTCTGCATACCT 58253 23 100.0 54 ....................... CTGCCACCACGATGCTTGATAAAGCTAATGACCTCTTGTGGTTTCTGCATACCT 58330 23 100.0 54 ....................... ATTTGTCAAATACTCGGATTTATTGCACAATTCTTCCCTGGTTTCTGCATACCT 58407 23 100.0 52 ....................... CTCTAAAGCTTTCAAGGGCGTGCAAGTCGTTTTATAAAGTTTCTGCATACCT 58482 23 100.0 54 ....................... GATCACAAGAAAATTTCATTTCTTTTTCTAACGCTGACAAGTTTCTGCATACCT 58559 23 100.0 60 ....................... TTAAATTATCTTCTTCACCCTGATAATTTAATAAAATATTGTCAGAGTTTCTGCATACCT 58642 23 100.0 50 ....................... CAATTGATTTGCTGGGGGGGGCTGCAATCTATGCCAGTTTCTGCATACCT 58715 23 100.0 50 ....................... TTAGCTCCCCTACTGCGGCAAGGTATGCTAACGGTAGTTTCTGCATACCT 58788 23 100.0 54 ....................... ATAAGTTCAGCATATAATTTAGCTTCTTTTTTGGCATCAAGTTTCTGCATACCT 58865 23 100.0 53 ....................... TTAGCACTTCTTGTTCTGTCTGTTCTTTGACGATTATGTGTTTCTGCATACCT 58941 23 100.0 51 ....................... ATTCCTTGATATAGAAATAGAATTTACCCTCTTTTTGGTTTCTGCATACCT 59015 23 100.0 52 ....................... TCAAAATCGACTGAGAACCTAATGCCGTTCTGTTCCTGGTTTCTGCATACCT 59090 23 100.0 52 ....................... GTAACTTGGTGTGGGTCAATCTTGTAGAAATTACCCTCGTTTCTGCATACCT 59165 23 100.0 49 ....................... ATTGGTGTTCCCGGTGCAACTGTGGCTGCTGAAAAGTTTCTGCATACCT 59237 23 100.0 56 ....................... ATGTATTTATGCTGCTTGCTTTCCGGTAATCGGGATAGCCAGGTTTCTGCATACCT 59316 23 100.0 50 ....................... GTGTCAATTCGGATAATCTGATTCTGACCTGACGAAGTTTCTGCATACCT 59389 23 100.0 53 ....................... AAAATCTAAACCATGATCCCGATCATAAGAGATCGGCGAGTTTCTGCATACCT 59465 23 100.0 47 ....................... ACATTTCTTCTGAATAACGGCATGTCAACTAAAGTTTCTGCATACCT 59535 23 100.0 50 ....................... GCCCTCTCTGTACTTTAGGAAGCTTATCTAACAATGGTTTCTGCATACCT 59608 23 100.0 0 ....................... | ========== ====== ====== ====== ======================= ============================================================ ================== 54 23 100.0 51 AATCCCCGCAAGGGGACTGAAAC # Left flank : ATCTGATTATTTACGACTTACCCGATAATAAAGCAGCAAATAAACGGCGTACTCGCTTACATAAAATGCTGAGTGGTTATGGTAAGTGGACTCAATACAGTGTGTTTGAATGTTTCTTGAGTGCGGTACAGTTTGCTACACTACAAACAAAGATAGAAAAACTGATTAAGCCTGATGAAGATTCTATTAGGATGTATGTACTAGATGTTGGAAGTGTGAAAAGAACTATCACCTATGGTTCGGAAGTACCTAGACAAGAACAAGCAATAATTATATGATGAATACATCAGCTAAATTTTGGCAGACCTAGAGCGGGGTCAAAAACCCCAGGGATTCGCCAAATCGCCAGAACCTTGATAATTAAATACTTTCAGCGTTTCATTAGTTTCAGTTGGCAGTTAACCCATAGCCTGAAATGAGGTTTTTTGAGAGGTCTGCCAAAATCGTCTCTGGATTCCGCCCCCAGTTTATGTTTCAGATGGCGGGGTTTCTGCATACCT # Right flank : CTCGAATACCTGCGATCGCTACACTAGGTCAAGACAGCGCCTTATTTTTAGATAAAATACAAAGCCACACTAAACGCCGCAGAGTTTTTCAATACAGGACTGAGTTTCCTCTAAGAAACCCCAGATGCAATATGAAATGTTGATGAAGCGGCAAAGCAGTATATTCACTGAATAATGCACCCCTATAGTTTATCTGGGTCGGAATATTAAGTAATTCAAAACCGCTACAGTTGGTAGGTTTAGGGATTTAGTGTTTACTTGACACGAAGAGACAGAGTTATACTAACTCGCCATTGTAACCGTATCTATGCTTAATTTATATAGCAGTGTTTAGCTATTTACTGAAGTTTAGTTACAGTGTTTATTTATTTAGCAACGAAAATATACAAAAAATAAACTAGGAAAATGATTAAAACTACGCTTAAATGCGATTATTATCAAATAGATATATCAGTTGCTACGTCAGGCAATGAGCAGATGCTAATAGAAAGACCATTGGT # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.35, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATCCCCGCAAGGGGACTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,8] Score: 0.37/0.37 # Reference repeat match prediction: F [matched AATCCCCGAAAGGGGACGGAAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-9.10,-10.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [46.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.87,0.64 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 82819-82482 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCM01000004.1 Trichormus variabilis SAG 1403-4b sequence04, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ======================================== ================== 82818 38 100.0 32 ...................................... CCTTGATTTGCCGTTGTTCAAATACATTGGAG 82748 38 97.4 40 .....................................G AGGATGCCGCAGATTGGGCAAAAACTTATAATCTTGTCGC 82670 38 100.0 35 ...................................... CGGCTTCAAATAGCATTTCTTTAGATTCAATTTCA 82597 38 100.0 39 ...................................... TAAATGCAATGATTTAGAGCAAATTTGGAAGGCTTATGG 82520 36 86.8 0 .........................CT...--.....G | G,TC [82484,82497] ========== ====== ====== ====== ====================================== ======================================== ================== 5 38 96.8 37 ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAACT # Left flank : GGAGTTTGGACAAAGGTGATGTAAATGCAATATGCAGGAAAATAAAATAGATATTTCATAAGTTTTATTTTTATGCTATGATTACCAGCCTTGCAAAAATACAATCATTGCTCGTTCCCAGACTCCGGCTGGGAATGCCTACCACGAGGCTCTGCCTCCAATCCCAGAATACAAGCTATTTTACCCGATTTTGTGCTGGTAGTTGAGGCAGAGCCTCATCAACTGCATTCCTAGTCAGAGACTAGGAACGAGAAAAGTCGGCGAGTTATTATTAATCGCTATGGTAAAAAATGCGCGAGGGGGTAGGTGTACAAAAAGCGATTCCTGAAAAAACAGCCAAACTCCTATTCCTGTAAGAGTTGTAAGGCTTTTTTGCTGTTCATACCCTCGCGCCCCTTACCCAGTAATGGTTTCAGCGATTTTTTCTCTTGACACGATTTCTGGAATGGAATATGATAATATGGCTCGTGCAATTGAACCTTGAAAACTAAATACAGTCA # Right flank : TTTTACCAGGATTTGAATTACAGCTTTAAACGACTCACTGGTAAAATTTAAACTTATATAATGCTGTAGCTTACTTAGATTAAGTACAAAATAAGAGTTTTTAGCCTTATTTAGTATAAATTTAAAATGTACCAATTAAAAAAGTTTGCTGTGCAAGACTTGTAAAAATATAAATACAGTTCCTGACTAAAAAATTGTATATGAAAAAAACCCTATTCCTGAGTCCACCTTCCTTTGATGGCTTTGACGGTGGTGCTGGTTCACGATACCAGGCTAAAAGAGAAATTACTTCCTTTTGGTATCCCACATGGTTAGCCCAACCCGCAGCCCTGGTTCCGGGTAGCAGGCTAGTAGATGCACCACCACATAGTCAAACTGTGGAAGATGTGCTGAAAATTGCCAAAGATTATGAATTGGTAATTATGCACACTAGTACTCCTTCCCTCGCTAATGATGTCAAGTGTGCTGAAGCCATAAAAGCCCAAAATCCAAATGTGCAG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCAACTAATCCCTATTAGGGATTGAAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.42%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-7.50,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [66.7-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.87 Confidence: HIGH] # Array family : NA // Array 1 305212-303318 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCM01000006.1 Trichormus variabilis SAG 1403-4b sequence06, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ================================================ ================== 305211 37 100.0 35 ..................................... ACATTTCCTGATGGAGAAATCCGGGATTTCGGTGG 305139 37 100.0 37 ..................................... CACCCCAGCGTCACAGAAAGCAATTGCCCCGATTTTT 305065 37 100.0 32 ..................................... AAGCTATCGACGAAACAACATGGACAAAATAA 304996 37 100.0 35 ..................................... GACTCTTCTACCTATTCCAAGATTAAGCATCTCTT 304924 37 100.0 35 ..................................... TGACAGAGAGGGACTTTCAGAATAAAATGGCGTAA 304852 37 100.0 32 ..................................... CCTCTTCAAGCATCGACAAAGATTTACCAGAG 304783 37 100.0 48 ..................................... GAAAGAACTTCCCAAAGTATGCCAAAACCTATAAAAGGATACGATGAA 304698 37 100.0 37 ..................................... AGAAAAATCCTGATGGACATAATGCGGGTAGACCTAA 304624 37 100.0 33 ..................................... TGTTTAATTTAATTACCCGTTGATGGACTGCAT 304554 37 100.0 37 ..................................... ATTGCACTTATTGCACAAACTACAAGCCTATATCTAC 304480 37 100.0 39 ..................................... TCAGAAGGAGAAACGTACTGGGCGTTATGCTTGTGGATT 304404 37 100.0 41 ..................................... ATCATAAAAATCGAATTATAAAGATTCAATCACCGGGATTG 304326 37 100.0 37 ..................................... GTTTAAAATGCCCCATTCAACACGACTGCTATACACA 304252 37 100.0 45 ..................................... TTTCCAAGAATTTCCTAATTAATTTATGGGGCTAATTGCCCCTTT 304170 37 100.0 35 ..................................... ACTTCGCCATCGCCCCCCCGGCTAATCAATCTCTT 304098 37 100.0 40 ..................................... GCAGAGTTTACCCCATCACCTCCCAATATTTCCTGATTGC 304021 37 100.0 34 ..................................... ATAGGTGATCCACTTAATCGCCTTATCTCCCAAA 303950 37 100.0 33 ..................................... TTAATCGGAGAAGGACGTGCAGATGCGTTGAGG 303880 37 100.0 41 ..................................... TGGAGCAGAGAGTTGCGGCGTTGGAAAAATTAGTTTCCACG 303802 37 100.0 36 ..................................... ACACAGAAGATGCTGATGGAGTAGCACCTCAAGGTA 303729 37 100.0 40 ..................................... TTTTTCGACGCACAATTTGAACAATCATTCATAATAATTG 303652 37 100.0 34 ..................................... CTACATATTCTGGTCAGCCAACTGTCGCTTTGCA 303581 37 100.0 43 ..................................... GTTCAAGATGCTATCGACAACACTACGGAGACCGTCAAAGCTC 303501 37 100.0 37 ..................................... CCCTATTTGATTCTTGTGCAGCAACTCAAATACAAAG 303427 37 100.0 36 ..................................... GACAAATATCTCATCACCAAATGCAAACTGCACTTC 303354 37 78.4 0 .............T...C.......G..A...TTCT. | ========== ====== ====== ====== ===================================== ================================================ ================== 26 37 99.2 37 ATTGCAATTTCACATAATCCCTATTAGGGATTGAAAC # Left flank : ATAATGTGGCGCGGAATGAAAGTGATGTCAATTTCCGTAACCAGTTATTTGTGGCTTTAACCAGGGCGAGGGGTTGGGCGAATCTCAGCGGTGTTGGTAGTTATCCGATGTATGATGAAATGCGAAAGGTAATTGCTAGTGGGGAAAGTTTTACTTTTACTTATAAGCGTCCGCCTAAGCGGGATATTGGGGATGGTGATTAGGTTCAAATTTGGTAAAGTAAAAAGAATTAGGTGGTAAAAAGCCACAAAATAAAAAGATTCTCTTCCCCTAATGCGCGAGGGGGTGGGTGTAAAAAATCCGATTTCTCAAAATATGGCTGAAATCATATCTACATAAGGCTTTGATGGATTTTTTCTGTCTACACCCTCGCGCACCTTACACAGCAAGGTTTTCAGCGTTTTTCACTCTTGACACTTTTTCTGGAATGGACTATTATGATCTCATTCGCGCAATCGAACCTTGAAAACTACATATATATAGAGTTTCAGACTCCCGCT # Right flank : GTTCCCATACTCTGTATGGGAATGAATTTTAAAAGGCTCTGCCTTCTTTGTAAAGTGGAGGCAGAGCCTCCTCATGGCATTCCCAGTCTGAGACTGGGAACGAGATAACTTATATAATACTTATTTACCCATACACAAAAACTGGAACTCTTTTATAAGCAGGTGTACCACTGTGAGGATCAATTTCTGCCTTAAATAAAATATTAGCTTCAGGATAAAACATAAAAGCTACACCTTCACGAATTCCACCACAAATAATTTCAATATTGTTTAATTCTCCTGCATTTCCTTTAACTGTAACTTGTTGATGTTCCTGAAATCCTGCTTTTTTAATATCTAAACTATTCATCAAAATACAATGACGATGGGGCATATTTCGATATTTATCTTCACTCCGATAAACTACAGTATTATGTTGACTATAACTGCGTCCTGTTCCCAATATGACTACAATTCCTGACTGATTTTCTGAAACTCCAAAATCTGATTTATTCGGTAAA # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGCAATTTCACATAATCCCTATTAGGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.50,-7.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-60.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,4.91 Confidence: HIGH] # Array family : NA // Array 1 231562-233660 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCM01000009.1 Trichormus variabilis SAG 1403-4b sequence09, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================================= ================== 231562 37 100.0 40 ..................................... AAACCATGGAAATCATCCGTTACTCTTCTCTTTAGTACGT 231639 37 100.0 36 ..................................... CTTCAAGCAGAGTGCTTATCGATATTTTGTGATGTC 231712 37 100.0 36 ..................................... TCAACAGGTTCGCACTTTTTATGGACAGCTTGCAAA 231785 37 100.0 36 ..................................... TTTTAAGAAGTGTCCCTGACCAGGATAGATCATCTT 231858 37 100.0 38 ..................................... TAGAAGCGCAATTGTGGGAATCGAAGCTGAAATTGCTG 231933 37 100.0 35 ..................................... TCTGTCCAGTTGCTCACTCTGTTTGCCAAGTAAAT 232005 37 100.0 39 ..................................... CTCAATCAACACCTGAGCTATTGGGAAGATTAGAGGAAG 232081 37 100.0 35 ..................................... TGTTCCTGCTCAAACTGGAATTGCTGCTCTAGCTT 232153 37 100.0 35 ..................................... CATAAGTTGTAACAGCACAATAGGAGACTTGAAAA 232225 37 100.0 34 ..................................... TTTCGACTCAGGAGCGGCAGGAGTTGAGAGAGCG 232296 37 100.0 36 ..................................... ACACAATATTTTATTCATGCTCAAGGAATTACAAAA 232369 37 100.0 37 ..................................... AAAGGAAGATTGATATGAGGTTTGTGAAGATTCAAGC 232443 37 100.0 35 ..................................... GGAAACCTTTTATCTTCACTGCTTGACATGGCAGA 232515 37 100.0 34 ..................................... AAAACGTAGCTCGTGCCACCGAACGCACAGCCGG 232586 37 100.0 36 ..................................... CCCAAATTGGGGATAATCAATGGCTGCAAGCGACTT 232659 37 100.0 43 ..................................... CGGAACTAAGTCCAGTACCTGTCTGACCGAAAGGGGAAGATTG 232739 37 100.0 36 ..................................... CAGTGCCTGGGCGTAAAGATAAAATCGACATTGCAG 232812 37 100.0 36 ..................................... CTTCACCACCAACTATAAAAATTACTGGGCAATAAT 232885 37 100.0 39 ..................................... GTCGGCTAGTTCCGAACTAATCTTTTTGGCTTCACGTTC 232961 37 100.0 35 ..................................... TGTAGAAATTTCTGGAGGTCAGACCGTCCCTTGAT 233033 37 100.0 45 ..................................... CCCGCCGGGATATTTCACTGACCAATTTCTACTGCTGCGTTTCAA 233115 37 100.0 36 ..................................... TCTTATTGCATGGGACGGTAATTGTCCGGCGTTTGG 233188 37 100.0 33 ..................................... ATATACATTTTTGGAGCAATGAACCGATGACAA 233258 37 100.0 33 ..................................... AAGGCGTTCAAGGTGTTGCTGGCGCACGTGGTC 233328 37 100.0 36 ..................................... CTCTAAATCTCAAAGCCTAATTATTCCCGTAATTGG 233401 37 100.0 40 ..................................... CAGGAATAAAAACCGTCACCCGTCGTAATTGGTCAGAAAT 233478 37 100.0 36 ..................................... TAAAAATGGCGCTTTATCTTGACATAGACCAACCAT 233551 37 100.0 36 ..................................... CTAAAGTCCATGTTTTTTCTCTTGTTCTATTCTTTT 233624 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================================= ================== 29 37 100.0 37 CTTTCAACCCGCCCCACTTCGGGAGGGGTGTTGAAAC # Left flank : GCGCCCAGATGCAAGTAGTTGGTGTAGCGAACACTTACCCTTTTCATATGCTTCAGCGTCAAGCCAACTGGACTGTAGATTATTTGACTGATTTGGAATTGGAACGGGTGCAGCAGGTGTATTTGCAAAAAGATGTAAAATCTGCCGTGCCTGAGTGTTAAGATAGAGTACGTCTGTCAGAGTTTGCTACTCTGCACTCACAAGGGGAATTAGCTCAGTTGGTAGAGTGCTGCGATCGCACCGCAGAGGTCAGGGGTTCGAGTCTCCTATTCTCCATTATAAATTGTTGTCACTTGCCAAATAATTTGTCCGCGTTGACAAATTGTTGTCCGTCTTGCCAAATTGCTGTCCGTGCTGCCAAATTATTTGTCCTTAAATTTTATCTCCAGGTAATACACATAACTTATGTTGTGTACGATCGCAGCACTCCTTTCAACCCACCTTAATTTTATAACAGTGTTTTAATTTATTAGGCTCTGAAACAGAAGACAAAATTTAGA # Right flank : CTCCGCCCGACCAAACCCTTATCTGAAGACACTTCCAAAAGCAATTTTGGCGAATGTCCTAAATCTGCTCTAAATTTTCCTCTCAAAAGAGAATTATTGAAGCATCTAAACATCCGAAACACAGATTAGACAAGGGATTTGGACTTTTGGCAGAACCCCAGGGTTTTTGACCTCGCTTATGGTTCGCCAAAAATAAATAATTAAGGTGGATTCCTCCTTGCTCGGAGGTGATTCGGTAGCCACCACTGCGGTAAACCCGCACCTCTATTACTGGGGGCGCACCTTATTCCTGTTTACTAGAAACAGCAGCATCAAGGTGGGCAGCTACTAGGGTCAGAAAGCACGACTGTCTCACAACAGTCAAACTAACCCGCATTTATCACAGGACAGAGGTTTATTAAAAACATGAACTGCGGCGCTATTGTTAATTACTATTCTATTATCAAGGTTCGGTATTTTGTCAATCAGGCTTTTCGGGATTGATAGGTGCTTATCGCTAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTCAACCCGCCCCACTTCGGGAGGGGTGTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [7,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.30,-11.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [75.0-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.64,0.37 Confidence: LOW] # Array family : NA // Array 1 132701-134328 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCM01000008.1 Trichormus variabilis SAG 1403-4b sequence08, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ======================================= ================== 132701 37 100.0 36 ..................................... AAGATTTACAAACTGTTGCCATTTAAAATGTCATGA 132774 37 100.0 36 ..................................... CCGCCACTGCTTACTTGGCTTAATTCTAAAGCTGTA 132847 37 100.0 37 ..................................... AAGAAAATAGATTACCAGCCGCCTGATATATGCGGCT 132921 37 100.0 37 ..................................... ATGATATCTAGGATTTGACAAATTGAAAACATATATA 132995 37 100.0 36 ..................................... ATTAAGAAGAAATTCCCTGAGATAAAAATCTTGAGG 133068 37 100.0 35 ..................................... CCAAAAATTTCTACCAGTAATGGTATATGGATTAA 133140 37 100.0 34 ..................................... CTGATTCATCTTTGAACCTTGACTCAAATCTAAA 133211 37 100.0 34 ..................................... TACGAATCATCGTTTAGCCCCTTTCCTAACCTTC 133282 37 100.0 39 ..................................... AAAAAATATGACAGTAACAGCTATTTACGGCAAACCTGG 133358 37 100.0 34 ..................................... AACACAATCAACCATCATAAAAACCAAAGGTTTT 133429 37 100.0 34 ..................................... TTTACTAACTAAAGAGAGAAAGAATCATTATGAT 133500 37 100.0 38 ..................................... AAACTAAATGGCGGATTTGCAGATATTGTCACTGATTT 133575 37 100.0 38 ..................................... ATTCCAATAATTAACGGTATCGCCGCAATCGTTGGTAA 133650 37 100.0 38 ..................................... TTTGAACCATCACCTTTTAAAAATACAGATTCCTGTAA 133725 37 100.0 36 ..................................... ATTCACACTGATAATCCCAATCTTGTAGCCGCATTA 133798 37 100.0 37 ..................................... ATGACAAAACCGGGACTATTCCTACTACCTTGATTGG 133872 37 100.0 36 ..................................... GACTCATGGGCGCACCTAGTAAATACATCCCAGACT 133945 37 100.0 38 ..................................... ACGCTATCTCCTTTTCTACTCACCTCTACACCTCTTGA 134020 37 100.0 33 ..................................... ATGTACCTGCCTTTCCAGACACCAGTTATCTGA 134090 37 100.0 36 ..................................... TTTGCATCAAATAATCTGTTACGTAATTGATGTACA 134163 37 100.0 35 ..................................... GTTTCCTATCTCTCTTATTTTCCATTTATTTCTTG 134235 37 100.0 17 ..................................... TTCTATAGCGATCACCA Deletion [134289] 134289 37 75.7 0 T......AA........A.......CA..C...C..C | A,AC [134317,134321] ========== ====== ====== ====== ===================================== ======================================= ================== 23 37 98.9 35 GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Left flank : GGAAAACAAGGTGTAGGTGAAATATGGACTTCTCCCACACTTCCCTTTCTCCCAATTATTAAAGTTTCTCCATCAGTTAAGGCGCTATGATGATGACCAATAACTCCATTTGAACCATAGATAGGAAAGCCCGTGCCACTTCTTATGCGATTAGGTAACGATTTCCCGTAGTTAAATTCCAAAATCTCGCCCAAAGTTACTTCCATCCAAGACGACGGATACTGGCTCATACTTCCACTTCCTCGCCCAACTCCTCCAGAATTTTTCGCAACTCTGCCAGAGCTTCCTCTAATTCAGCCATAGCCTCCTGCGCGATTTCTGAGGGTTCAAACAATTCATCAGTTCCACTCTCGTTTTCATCATTGAGCCAAGAAATGTCTAAGCTGTCACCAAGTTCTGCTATCCAGTCACGAGTAAATTTTCTAAAACGTCCTTGTTCGCCAGTATCTACACGCTTGGCAAGGTAACAGTTCTAGACGGTAAAACAGGATATCGGCGTG # Right flank : CTGGCACATTGATAAGGTGCGTCAGATATCAAAAATCTGTTTATTTACTAGATTTATGCTGTCTGACGCACCCTACAATTGATTTTTGGTGTGACACCTGCGTAAGTCCTATAGGGGTGAATTTAAAGGTGTGTAGTAAGTTTTATATTTGAATTAGATATATTATTCAACGGGAGGATTGAAAGGCGCACTTCGTTCGGGACTATTCTCAAGTTTTTTCCTATACTAGAAGTATAGTGAAGTCAAATCTACAGAATAAAAATAGACGACATTAATTTGTTAACAGTCAGCTAGAATGATTCGACGACACTAATTTGTTAACAGCGACATTAATTTGATAATAACGACATGAATCTGTTAACGACGACAAATAATTTGTTATTCGACAGCTAATCGGGATGACTGGATTCGAACCAGCGGCCCCTTCGTCCCGAACGAAGTGCGCTACCAAGCTGCGCCACATCCCGCCACAAAAATTGCAATTGTCAAGTAATTATATC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTCAACTACCATCCCGACTAGGGGTGGGTTGAAAG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [9,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-13.10,-7.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [51.7-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.37,0 Confidence: MEDIUM] # Array family : NA // Array 1 168560-167488 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCM01000010.1 Trichormus variabilis SAG 1403-4b sequence10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =========================================== ================== 168559 36 100.0 37 .................................... GTTTTGGTCGCCAGTGGTTGATGTTGAGTTTGAACAA 168486 36 100.0 42 .................................... CAGACGGGAAGTTTCCCGAGTCCCACCACCCAGTGAAATTCT 168408 36 100.0 42 .................................... TATTCTCCTTTTTTCGTAAGAAAGAAAATACAACAATAGAAG 168330 36 100.0 38 .................................... TTGAGGTGGTCCATTTGTTTAGTCCGCCACCGTTTCCA 168256 36 100.0 36 .................................... TCTCTTTGTTGGTTAGGACAACGCGAGTACTGAGAA 168184 36 100.0 36 .................................... GCTAAAGTCAAATGATGGATTGGAAATACTTGCCTT 168112 36 100.0 39 .................................... AATGTGCCAAACATGCACGCTGCTTGTTGTTTTATGACA 168037 36 100.0 43 .................................... TTTTCATGATTTTAACCAGAATAATTTTTACAAAAAATACAAT 167958 36 100.0 37 .................................... CCACAGCCGCGCTGTAACCGTTACTTTCTAAACAATC 167885 36 100.0 38 .................................... ACTTAATAGAAAAAACTATGTTCTTAGCGATGTTGTTG 167811 36 100.0 37 .................................... AATTAAGACTCTATATTTATATGAGTTTTAATTATAC 167738 36 100.0 39 .................................... AGCATAGTTTCTTTCTGCATTTGTTTCTTGAACTTCTGT 167663 36 100.0 34 .................................... GAAAAGAATTGAACTTAGACATTTTTTTTACCTC 167593 36 100.0 34 .................................... ACTGAAGATAACCGCATACGATGCGGCTCAGAAA 167523 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== =========================================== ================== 15 36 100.0 38 CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Left flank : TCTAAATGCTAGTCGTTGTTGTATATGATATTCCTGATGACAAAAGGCGCACGAAGTTATCCAATTTTCTAGAAGGTTATGGGCGAAGAGTTCAGTTTTCTGTGTTTGAATGTTTTTTGAATTTGGAGGAAATGCGACAACTTTATATAAATGTGAGAAAGTTAGTTAAACCTGAACAGGATAGTGTGCGGTTGTATTGGATATCCCAAGAAGCTGTTGAGAGGGTGTTAACAATTGGTGGTGAAGCACCCCAACCCCCGCCAAACTATTATGTCATCTAGGTTTGAGGCTATTCTAGGAGGTTTTTGTAACATGACTATCTACACACCTCAGCAAATCGCCCAAACCCTTATTCTTTCGTTGAGGTGTGTCGATTGCTTGCTGTGTAAGGGTTTGAAGTATGTGTTTGATTAATTTTTTGGCTGGGTGTACAATCTTTTTTAGAGGTGTGTCGATTTGCGGTCTGAAACCCTTACTGGGTAAAGGCTGCTAAACGAACT # Right flank : ACTGCTCTTTCCCATACAGCCGCTTTAGCGGTCGGGTTTCCTCGCCATCTTCGGTGAAGAAATATTTTGACCGTTGAAGTCTTTGCTATAAATACCAGGACAGAATTAATTACATATTAGACATATACCAACCCTTTGCCAGTTAAAGATTTCAGCGCAGTGTTTTGTGTAAATAATTTTGTCCAACTACCTCTCTACCCCAATATTTAATTAATTTTGTCATTCGCATCAATAGACAGTCGCCTAATTATCAGAACCTGTAAACTCATAAATATCAAAACATGAAATATACATTTGAATCCTAAGACAAAAATCATGAATAACAATGAATCCGTCTCCAATGTCTCCAATGTCTCCAATGTCCTTGAAGTCATCAATGTAAGTGAAAACGATACTATGAATACGGCAACGGAAGACACTTATATCAACGAAGGAGACAGATTTGGTAGTGATTTAGAAAAAGCCACCAAAGTTCGTCGAGAAACTGCTGAAATTTTAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-53.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 2 183740-182671 **** Predicted by CRISPRDetect 2.4 *** >NZ_RSCM01000010.1 Trichormus variabilis SAG 1403-4b sequence10, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================================ ================== 183739 36 100.0 39 .................................... TCTGTTTGCCATATTTCTTTGGCGAAATGTAAGATTTCG 183664 36 100.0 41 .................................... CCTTGTGGGCATGAAAGCATAAATCCGACTGACTGTCCTGA 183587 36 100.0 44 .................................... GCCACTGTTTCCAGTGACCTGAGCATAAACGGCAGAAGCAGAAA 183507 36 100.0 35 .................................... GTTTGATTTTGCCCTAGCGACTGCGTCGCCTAGAG 183436 36 100.0 40 .................................... TTTTAAGTGTATAATCCCAAAGTTACGGCTTCTTTTTTAG 183360 36 100.0 35 .................................... CAAAAGTTACGTTAGACATGTTTTCACTGATATTT 183289 36 100.0 33 .................................... ATTAATAGGCGGCTGGGTCTGCGCATAAACGGC 183220 36 100.0 38 .................................... CAAATTCCTCAACATCCGTCTTGGTTGAGGAATTTGTC 183146 36 100.0 35 .................................... GGTAATCCAACTTAACGACCACAGCCGCGCTGTAA 183075 36 100.0 39 .................................... AAAAACGTTCTGTGATTGCCCTTGCAAGTTGCTTTGTCC 183000 36 100.0 41 .................................... ATTCTGAGATGCGTTTTCTTAAAGTGTGCATAATTGATTCG 182923 36 100.0 36 .................................... GAATTGCTCTGGCTTGAGTTATACTAAAGCCTTCTT 182851 36 100.0 37 .................................... ACAAGTCCGTAGTCACGCCATGGATAAAAGCACCATA 182778 36 100.0 36 .................................... TCTTTGAATATGTACCAAATAATGTCATATACATCA 182706 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================================ ================== 15 36 100.0 38 CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Left flank : TAGGGTATAGTGTTATTGTTATTTTCCTAATTTATAGCGGTATGCACTTAGATGAGATACAGTCATTAAATTGCAAACCCTGTAGGAGCGGGGTTTCCCCGCCCTTGATTGTGTTTCATCCAACCGATAACCGCTATATTTAAATATGCGAATTAAGTTAAATATTCAAGATGTATGTTTCATTTTAGTCAGGTACAAATGATAATTTAACATTACTCGTGCGAATGACCAATCAGATATTATCTCAAAGTAAATTTGGTATCAAAGTCTTTTTGTATCTAGGTTTCAGGCTATTTGAGGCGATTTTGTATCATGACTATCTACACACCTCGGCAAATCGCTGAAACCCCTATTCTTTCGTTGAGGTGTGTCGAATGCTTACTGTGTAAGGGTTTGAGCTATGTGTTTGACTAATTTTTTAGATGGTTTTACAATCTTTTTTAGAGGTGTGTCGATTTGCGGTCTGAAACTCTTACTGGGTAAGGGCTGCTAGACGAACT # Right flank : TTGTTTGACAATTATAGGAGTTACGCATTGACAAAAAACATCAAATATATATAGACGTGAAAAACACATTTATCGTAGGGGTTTAGCAGTGCTAAACCCCTACCCCACGGTTGATTTATCGGCAAAAATAGAATTAATTGCAGCCTGAAATAAGGTATTTTAGTGAACGCATATCACGATTGATTTGTACAGTGCGTAAGTCCTAAATTAGTAAGTAAAATTGTAATTGGAAAATCAAAAATGATTCGTTTAGTTTTTGTTTTTGCTGTTATTTATTTATCTTTTTCTTGTTCAGCATTACTAGAAGAAGAAAAAACTCAAGAAGTGCGAATATACTGCACTAAAGACAATTTTTCCACAGTTAGCATTACCTGGAAGAGTAATCACGTAAAGCACAATCGTTTTGTGAACAACAATTGTCACCTAAAAACTCCCGTCTATGTTGGGAGATTCTTATTTTTTAATAGCTTAAAATCTACCCAAGAAGAAGTTGTTACAGT # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCACCGATTGGGTTAATTCGGAATAATTGGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.40,-3.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [71.7-51.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.37 Confidence: LOW] # Array family : NA //