Array 1 12244-13126 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPU010000062.1 Pseudoflavonifractor sp. MSJ-30 Wk-30_ctg0225, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 12244 28 100.0 33 ............................ TACAGTTGGGGCGGCTCTTCTCTGATTTACAAC 12305 28 100.0 33 ............................ TAGCGCTCTTTTTCATATTGGATCTCCTTCCGA 12366 28 100.0 33 ............................ TTTCGTCAAGAATTGCATAATAGACCGCCAAAA 12427 28 100.0 33 ............................ CTACCACTATAGCATCGGTCAAAACAGCTGGAC 12488 28 100.0 33 ............................ CGCAATAAATGTAATCGTCAATGCCGTGTTCAA 12549 28 100.0 33 ............................ CAAACTCGGGCATGTTATCGTCACAAGCCTTGA 12610 28 100.0 33 ............................ CTATTGCAACTACTGCCGATCATATGACAATGC 12671 28 100.0 33 ............................ CACGCCACCGTAGGTGTCCGCAATGGTCACAGC 12732 28 100.0 33 ............................ TAAGGCTAACTCCGGTTCTGCTGCGCTGAATGC 12793 28 100.0 33 ............................ CAAAATCCGTGAATTGAGCCTGAGAAGAATGAA 12854 28 100.0 33 ............................ CCCGGGAATCGGGCGGCTGCGGTATACCGGCGA 12915 28 100.0 33 ............................ CCAGTTTTGGGCAGACATCTTCTGCCAGATTCG 12976 28 96.4 33 .......................A.... CGATCCCGGCCTCCCAAACTGTGCTGCCTGGGC 13037 28 100.0 33 ............................ TGGCACCAACATGACCATCATGCAGACCGGCAA 13098 28 85.7 0 ..G..................AAA.... | A [13119] ========== ====== ====== ====== ============================ ================================= ================== 15 28 98.8 33 CTTTTCCCCGCACACGCGGGGGTGATCC # Left flank : CGGAGCATAGTGAGCTTCTGGAAATTGGCGCGGTGCGCATTATTGACCATAATATTTCCGAAAAATTCTCTGCCCTGATTCGCACAAAACAGCCGGTTCCAAGGGAAATTACGCTATTGACCGGTATTACCCAGCAAATGTCGGAGGAGGGAAGCGAATGCGCAAAAGCACTGGAGGCATTCTGGAGTTTCCTCGGAAGCAGCGCAGTCATAGGGCACAATCTAAGTTTTGACCTGGCATTTTTGAAAAAGGCCAGTGCAGAGACAGGGACCCCTGTCGGGAGAAATTCCTGCATTGATACACTGAGCCTGGCTCGCCGGAAAATTCGGGACATTACAGACTATAGATTAGAGACGCTGGCGGACTATTTTGACATAAAGCCGGAGCGGTTTCACCGAGCCTTGGAGGACTGTTGTACCACATTCCGGATTTATGAGAAACTCAATGAAATCTGAGACGCACGGGATCAAAAGTTCTGAATTTTCTAGGACTTTTTTAGT # Right flank : CCAGGTAATGACAATGGTGCCCATGCCACAAACACTACTGGCTTTTACGGGAAGACCAGCACTGGAAAAACCACAGTCTACGGATTGATCGCTCCGGAATGCGGCTGCATGAAGGATAGCTTTCCTGTTAAAGAATGAGAGAGGAGAATTCGATGCCATTTGAAATTGTCCGCAGCGACATCACGAAGATTCAGGCGGATGCCATTGTGAATCCCACAGACAGCCGCTTTTCCGGCTCCGGCGGGGCGGACTATGCCATTCACAAAGCGGCAGGCCCTCTTTTGAGACAAGCATGCGAAAAGGCCGGAACACTGCACCAGAGTGAAATTGCGGTGACGGATGGGTATGACCTGCCTTGCCGATATGTATTTCACACCATGGGGCCAATCTGGACCGGCGGAAGAAAAAATGAGGCGGCGCTGCTGCGGGCGTGCTATTTGAACGCCCTGCTGAAGGCCGGGGAAATGGGGCTTTCCTCCGTTGCCTTTCCGCTGATTTCC # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTTCCCCGCACACGCGGGGGTGATCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCACACGCGGGGGTGATCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.00,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 4104-46 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHLPU010000004.1 Pseudoflavonifractor sp. MSJ-30 Wk-30_ctg0072, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= ===================================== ================== 4103 33 100.0 35 ................................. ATGCGGTCTGCTGCTCATAGGTTAAGCTGTGAGCA 4035 33 100.0 35 ................................. CAAGCAGGGGTATAAGCTGTTGGAAAAGCCGACAG 3967 33 100.0 33 ................................. ACCACGTATGAGCAGTGGATGCCAGATTTCATT 3901 33 100.0 35 ................................. GTTCACACCGTTTTCCCAAGCCCTCCGGTTGTCAC 3833 33 100.0 37 ................................. TTTACTTCCATCTGAACCAGAGTGCTGACGATGACGG 3763 33 100.0 33 ................................. CCCTGCCCTGCCGAAAAAGCCCAGACATCTGCC 3697 33 100.0 33 ................................. TTGTTTACATTTACTATTATATAGATATTTTCG 3631 33 100.0 35 ................................. ATCGTTGATTGCATCATTGGCGGTAGCCCCTGCCA 3563 33 100.0 35 ................................. CGTTGCTGCTGAAGGCTCCGGGAACGTTTTCCCAG 3495 33 100.0 35 ................................. CGACAGAACCGTTGTCGAGATACGCATATGCAGCC 3427 33 100.0 33 ................................. AATAGCCTGGTACTTGGCAAAGGTGTAATCCCG 3361 33 100.0 34 ................................. GTTCCGTACCGCTTACAGATCGTCAGGTCAGTTA 3294 33 100.0 34 ................................. CGGTTGTCACGGGCGTTTAGGTTGTTATTTATGC 3227 33 100.0 34 ................................. GCAAAAGTGAGACCGCACCAAGTCCGGGTACTTG 3160 33 100.0 34 ................................. CCACTCTTTCCCAATGCCGGCCGCAGAGCAAAGA 3093 33 100.0 34 ................................. CATCCTCCTAAGGAAACGGCTCCCGTGGGCCGAG 3026 33 100.0 34 ................................. ACCACACGGATTGCAAGTTTCGATTTGGTATTCA 2959 33 100.0 34 ................................. TCTTACTTTCTAATCGCAGTCAAATTCTTCTTCA 2892 33 100.0 34 ................................. TGTATTGACGAAAACCTAATTACATTGGTGGTAT 2825 33 100.0 36 ................................. GCTGCTATCCAAACGGTATGTTACCATCTGCAAATT 2756 33 100.0 34 ................................. CAGAGAGGGCAGCTGTTAAGTGGCCGTACATTGT 2689 33 100.0 34 ................................. ATATCAACCTTAAAGCTCTTCCCGCACTGAATTC 2622 33 100.0 33 ................................. CGGCACCATGCTGGGTACGCTATCGATGCCAAT 2556 33 100.0 34 ................................. GGACGTTGGGGCTGTGTCGCTGGATGCCCTGCAG 2489 33 100.0 34 ................................. ACCGTGCCGGAGGTAGCCGCTCCCACACATGGCG 2422 33 100.0 35 ................................. TCACGCTTACACAGATATCTTCAAGAAGGTATTCC 2354 33 100.0 35 ................................. ATTGACATCAAGGAGTTCCCTGATCTGGGCGGCGA 2286 33 100.0 34 ................................. CGAAATGAACCAGACCCAGACCCAAACGCTTGTG 2219 33 100.0 34 ................................. GTATGCCCAGGCTACTAGTTTTTCATAATCCTTG 2152 33 100.0 34 ................................. TAAAAATCACAACCATTGACGGGAATGGGGCAGA 2085 33 100.0 34 ................................. AGAATCCGCATAAAGCTTTGGGTACTTTGCGGAA 2018 33 100.0 34 ................................. TGCATCCTTGCACAGCTTGGCAACCTGCTCCTTA 1951 33 100.0 34 ................................. TTGGGTTTGGTGGTATTGGAGGCTGCGCACTTAC 1884 33 100.0 36 ................................. ACGTCCGTGTGGCTGAACTGGCCGGAGATTACCCCG 1815 33 100.0 35 ................................. TGGAGATCTGATTACCTTCGGCGGAGACGCTATTT 1747 33 100.0 33 ................................. TATCCTTGGCTGGAAGGGTATGCACCAGCTTGC 1681 33 100.0 35 ................................. TTCGAGCCATTCAGGAACCGGTTTTCGTTGGTATT 1613 33 100.0 33 ................................. TGCAATTTTTACCCTGAATACCGAAACGCTTTT 1547 33 100.0 34 ................................. CACCATTTCGGCGGTCTCCCCCTGCATCCGGATA 1480 33 100.0 33 ................................. CGGCTGGGCTACGACCTGTCCGTTGCCAGACTG 1414 33 100.0 34 ................................. CACCAAGTTCTACCGGGAGCAGCGGGACATTATG 1347 33 100.0 34 ................................. ATAACTTCTCCTAAGCTCTTCATAGAGCCGTCGG 1280 33 100.0 34 ................................. AACAACGACGTGAGCATCAAAGCCAAGCTGCCTG 1213 33 100.0 33 ................................. TTCGTCGGTTTGATTATTGTAGATTACGATTGT 1147 33 100.0 33 ................................. ATTGAAGTTGACCAATGCGGCAACCCGTTTACC 1081 33 100.0 33 ................................. CAGCAGAGCCGGTCATCAGATCGGACTCGGCCG 1015 33 100.0 33 ................................. GTTATGGGTGCCGCCCTAGCAGCCTATTGGATA 949 33 100.0 33 ................................. CGTCTGTATATATCCGTATCCTCATGTGCCTAC 883 33 100.0 34 ................................. TGCCACTTCACTGAGTGCTTCTGGCTTTAATACC 816 33 100.0 34 ................................. TTTTTTGTTAATCTCACCACACAGCTTGATAATT 749 33 100.0 33 ................................. TCCATTTGTTCCTCCTTGTCAGTCTTGCGTTGC 683 33 100.0 34 ................................. AATGTACAAAGATGGTACGTTTATCGTTGACCAC 616 33 100.0 34 ................................. CCCGCCGGCTACTCCATGCGGGAAGTACTCTGCA 549 33 100.0 34 ................................. CGGCTTGGTGGATACATACCGCATCACCTACGCC 482 33 100.0 35 ................................. TGATTTGGGAGCAGCTGAACGGAAAAGGGAGCTGC 414 33 100.0 35 ................................. TTCCTCCATCGGCAACCAGCTTTCGGAGATCAACC 346 33 100.0 36 ................................. CATAACGCTGCTGACGGATTACGTTTCCTTTATGAC 277 33 100.0 33 ................................. AGTCTTCAACGAAGCTCCAATAGAAAACTTTAC 211 33 100.0 34 ................................. AATTCCGGCCACACAATCCGGCTGAACGGGAAGC 144 33 100.0 33 ................................. TACATAATTAATTTACAGGAGGAAACAAGTATG 78 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= ===================================== ================== 61 33 100.0 34 GTCGGCCCCCACACGGGGGCCGTGGATTGAAAT # Left flank : GACGGATATCCGCCCTTTTTATGGAAGTGAAGTATGCTTGTACTGATCAGCTATGATGTGAATACTGAGGATGCCGCGGGACGGCGCAGACTGCGAAGGATTGCGAAACAGTGTCTGAACTATGGCCAAAGGGTCCAGAACAGCGTCTTTGAATGCTCGCTGGACGCGGCGCAGCTCCGTGCGCTGGAAGCTAAGCTCGTGGCAGAAATTGACCAGGAAAAAGACAGCCTGCGGTTCTATAACCTTGGAAACCATTATACGGAAAAGGTCCGCCACTACGGCGTAAGACCAGGGTACGACCCTGCCGAACCACTGATTTTGTAACGTCTGTGCGAACCCAAAGCGCCCACACAAGTCCCGGTACCTTCGCACCGGGATTTGGGGCGAAAACCAATGCCTTATCCACCTCAGCCGGGGCTGGATAAGAGAAACTTCTTCAGAAATGAAGAAAAATTGCGCAAATACACAAAAATGCAGCCGCATTTTTGTCAACATTTGCT # Right flank : TTGTTGCCTGTGAGCGGGATTTCAAAAACCAGCAAGTCGGCCCCCA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGGCCCCCACACGGGGGCCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.20,-9.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [33.3-66.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.14 Confidence: HIGH] # Array family : NA //