Array 1 167-1 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDZ01000161.1 Tetragenococcus halophilus subsp. halophilus strain 11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 166 32 100.0 35 ................................ ATTTCTTAGTAAGTAAATGAACATTTGGCTGACTT 99 32 100.0 35 ................................ ATTTGTGGTATAATATTTGACAATCATTTGTCTTA 32 32 100.0 0 ................................ | ========== ====== ====== ====== ================================ =================================== ================== 3 32 100.0 36 GTCGCTCTCTTCGTGAGAGCGTGGATTGAAAT # Left flank : GTATAATATTTGACAATCATTTGTCTT # Right flank : T # Questionable array : NO Score: 8.67 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCGTGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.56%AT] # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [0.0-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 23102-17550 **** Predicted by CRISPRDetect 2.4 *** >NZ_BDDZ01000066.1 Tetragenococcus halophilus subsp. halophilus strain 11, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ====================================== ================== 23101 32 100.0 37 ................................ TCTTTGGTGAGCGTTTTGGGCAAGCCCTAATTGGTAA 23032 32 100.0 36 ................................ AATTTCAGGTTTTCCAAAATCTTCGACTTGAAAACC 22964 32 100.0 35 ................................ ATCATATCACGCATTTCATTATTTTCATTATTCAT 22897 32 100.0 37 ................................ ACTGTTGTTTGGATCATAAGACCAAAGCACGATGCTG 22828 32 100.0 35 ................................ TTTTTTTGTTCTGATTAATCCAAAGATTTGCATCA 22761 32 100.0 35 ................................ AAAATAAACAAGAATTGTTTGACTTTTTACAACAA 22694 32 100.0 35 ................................ GCTGTTGATCAGATCCATTATCGTTGCTGTTTTGC 22627 32 100.0 37 ................................ TTTTGCCCTCTTTATTTTTATATTTAACAGCTCGTAA 22558 32 100.0 34 ................................ ATAATCTTTTCTTTTATCTGACATTAAATTTTAC 22492 32 100.0 38 ................................ TGCCATTTCCTCAACAAAGTGATCGATGATCTGATAAT 22422 32 100.0 34 ................................ CCTTTTCGTCACGTGGATACATCAAAGTTTCACC 22356 32 100.0 36 ................................ AGATAACCATTTTTCTGTTTTGGTTAGAATGATTTC 22288 32 100.0 34 ................................ AAGATAACTATATGGAAGATACAAAGAAAGCACT 22222 32 100.0 35 ................................ CACTTTTGGTACATCTTTTAATAACTGTTCGACTA 22155 32 100.0 36 ................................ TTCCTTTCTCTTGCCATATTTTACCCTTAAATTTCC 22087 32 100.0 34 ................................ CCACTTTGATAGACGAAAAAGAAAGTGGAATCCA 22021 32 100.0 35 ................................ AGCATAATAGACATATTTTTTATGATTTAAGACAT 21954 32 100.0 36 ................................ ATCTACAACCTTTTCAGTAGCTTTAGCTTGATCACT 21886 32 100.0 36 ................................ ATGAAATGATATACACCAAAGGGTTTCCCTGCTTTA 21818 32 100.0 37 ................................ TTTAGCTAACCAGTCAAACCGATTCCCTAAATCAACA 21749 32 100.0 35 ................................ TCTTAAATAATAATTAACTGTATTTTCCCATTCCT 21682 32 100.0 35 ................................ ATCAAGATTATGATCTTGAAAACCTCCAAAATCAA 21615 32 100.0 36 ................................ GTTATTCCAGTCGATTATACTCTCATATCGCTTAAA 21547 32 100.0 34 ................................ TCATTGAAGATAATACTTGCTAGCCTACGCGACG 21481 32 100.0 35 ................................ ATAGTTATAATATTGGTTGTTCTGTCAGTCGACCA 21414 32 100.0 37 ................................ TATGCTTAGGTTAAACTTATAGGCTAAGCGGTTTAAC 21345 32 100.0 36 ................................ TTGTAAGAGACGAATACAAAAAAGCCAACCTAGACA 21277 32 100.0 36 ................................ TACAATATCTTTTGTAGGTTTTGGACGGTTAAGACT 21209 32 100.0 37 ................................ TAAAAAAGAATTTATGAAATTACAGTGGGAAGAAGGC 21140 32 100.0 35 ................................ ATAAAGATATGCAAAGGTTTTGCCATACCATTTGT 21073 32 100.0 35 ................................ TCCCGGGATATCAAGTAGTGTAAACGTTACGGACG 21006 32 100.0 35 ................................ ATCTTTATCATATTTCACATAATCAAAACTAGTTT 20939 32 100.0 35 ................................ AACTCTATCTATATCACTTTCTTTACTTTCGTATA 20872 32 100.0 36 ................................ GATAAAAAACATTTTTTTATCGGTCCCGCGGAAACC 20804 32 100.0 35 ................................ TCTGTGGAAAATCGTCACTGTATCAGCAGGAGCTG 20737 32 100.0 34 ................................ CGCTAGATGAAGATGAAAAAAAGCAGGAAATTAT 20671 32 100.0 34 ................................ ACTATCTTTACCCCCTTCTATGCGTTCTTGTATA 20605 32 100.0 34 ................................ AGGAAATAAGGTATTATATAGCGGGACAGATGAG 20539 32 100.0 35 ................................ ATGCAAGAATTACTCAAAGCTATCGACTACTGTAA 20472 32 100.0 35 ................................ ATTTCTTAGTAAGTAAATGAACATTTGGCTGACTT 20405 32 100.0 35 ................................ ATTTGTGGTATAATATTTGACAATCATTTGTCTTA 20338 32 100.0 37 ................................ CTTTATGATTTGCAGTAACGATTATGATTATGTCCTC 20269 32 100.0 35 ................................ GTCCATATGGTAAAGCCCTATGTAAAAAACTATTA 20202 32 100.0 36 ................................ ATCAGTAAAAACTAAGGAACTATACGAGCTAGCCGT 20134 32 100.0 35 ................................ TTTTGAGTATTCAGATGTGATAGATGACCTAGAAA 20067 32 100.0 34 ................................ TTTTATAAAAGGTGTTGACACTATACCAAGTATT 20001 32 100.0 34 ................................ ATGGAGGAGTTACTTGCTTGCCTTTATTATCTGG 19935 32 100.0 36 ................................ TATATACACAGACTATTTGGATATGGTACGGAGAAT 19867 32 100.0 35 ................................ ACTATACCTGTGCCTTTAACCTCGACCGAGATAGT 19800 32 100.0 34 ................................ AAAAGCCTGCTCAAAGAAGAAAATCCTTTTAAAG 19734 32 100.0 35 ................................ TATTCAAGAACCAGCTTATTATGTAAAACCTCTAC 19667 32 100.0 35 ................................ TTACTAAAGTCTGCAAAGGATTGGAAAGCCTTTAC 19600 32 100.0 36 ................................ GTTAAAATCTTTGATCGTAAAAACTGATTATAAAAA 19532 32 100.0 36 ................................ GCCTTTTGCTAAAGTCGATAAATTTTTTGACCCTGA 19464 32 100.0 36 ................................ AGTATTATTGGAGAACTTCTTATAGTCCTCCATATC 19396 32 96.9 36 ...........T.................... ATTTGAATTTGTGTCCATTTAATCATGTTACTTACT 19328 32 100.0 35 ................................ TTCTTGTGCTTTATCTATTTTTTGGTTCAAAATTT 19261 32 100.0 36 ................................ TTATTTGAAAACAATTTTTCTAAAGATTTTATTTTA 19193 32 100.0 35 ................................ AGTTAAATCGATAGGTAATTACCATATCCAAACGG 19126 32 100.0 36 ................................ AGTACATCCTTTCTATAATGGCGTTTATAAAGATAC 19058 32 100.0 35 ................................ TTCGAACATATCGATGTCGATCAGCACCACTTTGT 18991 32 100.0 36 ................................ AGTATCATTATCGGTAATTTCTTCTGCCACGTCCGA 18923 32 100.0 36 ................................ TGAACGTATAAGCTCCGCTTCGGTTTTGTTGTGTGC 18855 32 100.0 34 ................................ TTTTAGAAAAAGTGTTGACAATATAGAAAGTAAA 18789 32 100.0 35 ................................ TTTTCCATCAGATATAGACGCAGTAGCTTTAATAT 18722 32 100.0 34 ................................ CGCATAACAAATCTAAGGAATTTTTAGCTATGAC 18656 32 100.0 35 ................................ AGCGATTGCACCTTTGGATACGACTTTAGAAGGTC 18589 32 100.0 35 ................................ CCCAGACGACTGACAATGAAGAATATGTTCTTATC 18522 32 100.0 37 ................................ AATAGTTTTCATGGCGTCGTTTAGAGGCGCGCCGTAA 18453 32 100.0 37 ................................ CCTCTGTGTGCGATGTAGTGAACAGAAGCGCCAGAAC 18384 32 100.0 36 ................................ AAGACAAAAGAAGAAGCAAAAGAATACGTTAAGAGA 18316 32 100.0 34 ................................ AAAATAACTCCGATAAATATAACGAAACAAACTT 18250 32 100.0 36 ................................ CCTGCTTTAATGGCTTGTTGAACAAAAGTATCGCAA 18182 32 100.0 36 ................................ TATTGACCCAAGAGAACACTATTTAAATATAAAAAT 18114 32 100.0 34 ................................ TGGTGGTTCTGGCGGTTCTGGTGGATCAGATGAC 18048 32 100.0 35 ................................ TTAGTTGTCCTCTCCATGTTTGCCATTCCATATCT 17981 32 100.0 36 ................................ ATTTTGTATATAAAAAATAGGCTACTCTAAGAGCAA 17913 32 100.0 35 ................................ TCTTTTCAAACATATGGATTTAAAAGGGATAAAAT 17846 32 100.0 34 ................................ GGTTTTACCGTAAAGTACAGGAGTAAGAAAGAAA 17780 32 100.0 35 ................................ TTTTCTTGAGCAAGAAATGCGTAAACTTGAAGACG 17713 32 93.8 36 ......T............T............ GTTTAAAGCTTATGCTAGCCCGCCAAAAGTAGAAGA 17645 32 93.8 33 ......T............T............ TTTGGGTATCAAGGGAAACAAAATCTTATAAAG 17580 31 84.4 0 .........C-........T.A..T....... | ========== ====== ====== ====== ================================ ====================================== ================== 83 32 99.6 35 GTCGCTCTCTTCGTGAGAGCGTGGATTGAAAT # Left flank : CCAAAGCAATCCGAAATGATTTGCCAAGTTATCCGCCTTTTATGGCGTAGGGGAGAACACTTATGATGGTTTTAGTTACTTATGATGTGAATACAGAAACAAAACAAGGAAGAAAACGTTTGAAACATGTTGCTAATTTATGTGTTGATTATGGCCAAAGAGTTCAAAACTCTGTTTTTGAATGTTCAGTAGTACCAGCAGAGTTTGTGGAATTGAAAGGAAAATTGGCCAACGTAATCGATCCGGAATTGGACAGTATTCGATTTTATTTACTAGGAAAAAATTGGCAAAATAGAGTGGAACAAATGGGAAATAATGATAGCTATGACCCTGATGAAGATGTTTTATTGTTGTAATGTTCATCGCGAATCGAGGTTACTCATAAATTATTCAGTCGGTTCGCACAAAATTAGCGCTATTTAGTAGAAACTAGTTGTTTTATTCCATTTAATAAATCATTTTCTGAATTTAAATTAGTGTGAAACCGCGTTTTTCCTGCG # Right flank : AGTATAATAAAGATTTTGGAGTGTTAGATAAATAAAAAATTGTAGGAAGTAATAAACGAACTTTTTGCACCATTTTATCATTCCTAGTATAATAACTATGTTTTGGACGAAAATTTTAAATTAACCAGAATACATAGAAGATAGGAGCAATTCATAATGACTAAGAATTTTTGGGCAGAATTACCGAAGCCCTTTTTTATTTTAGCGCCGATGGAAGATGTGACAGATGTCGCTTTTCGTCATGTGATAAAAGAAGCTGGTGCGCCGGATGTTTATTTTACTGAATTTACCAACTCGGATAGCTATTGTCACCCGGATGGTAGGCAAAGTGTCCAAGGTCGCCTGACTTTTACAGAAGATGAAAAACCGATTGTAGCACATATTTGGGGAGATAAACCTGAATATTTCCGTGAGATGAGTCTTGGTTTAACAGAAATGGGCTTTAGCGGCGTTGATATTAACATGGGGTGTCCGGTTCGTAATGTGGTAAGACGCGGGAA # Questionable array : NO Score: 9.24 # Score Detail : 1:0, 2:3, 3:3, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCTCTTCGTGAGAGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: F [10,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCACTCTTCGTGAGTGCGTGGGTTGAAAT with 91% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.90,-4.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //