Array 1 22462-22132 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHP01000005.1 Gilliamella apicola strain Nev6-6 Gilliamella_apicola_Nev6-6_contig102, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== =================================== ================== 22461 26 100.0 35 .......................... CCGCATTCTGTCAGAATAGGAATGAATTAAATTAT 22400 26 100.0 35 .......................... CCGAGCTGAAGGTCAACGGCTCAAATATTGCTAAT 22339 26 100.0 35 .......................... CCGCTTTACGAACTCGAACCTGTTCGGCAGTTGCG 22278 26 100.0 35 .......................... CCGCCGTAAAAAAGGCTGATAACGAAACATACATC 22217 26 100.0 35 .......................... CCGTATATTTACGTTAATTTGATTTAGCTAACGCC 22156 25 92.3 0 .............G...........- | ========== ====== ====== ====== ========================== =================================== ================== 6 26 98.7 35 GTGTTCCCTGTATACACAGGGATAAA # Left flank : AAAAACACACGCATTTTAAAGCGCATAGGAACCGAATACCCCTCTAAGTCAGCAGGTATTGACGGCGCACCAATGGATTTTAATTACCGTCAGTATTTAACAGAAGATGAAGCGCAGATTGTTGATAATGCTGTTTTAAGGCTCAAAGCGGATAATATTGAATATTGGGCGGTATTAACCTCTTTTTATCTACGTGACATTTCATGCAGTAAGCAAGCAAAAATATTAGGTAAGCAAACAACAGAAATGACAAAAATATTATTAGCAGCAGAATGTTTTATACGGGGGCACATTATTGAATTATTCCCAAAAGTGGCGTAGATAACCATGATTATAAAAAGAGGTATTTTGGATTGTTAATTAAAATTTATTTAAAACAAAATGTTATGTCTGATATAATCTAATTGGTCGTTGAATAAGCGGTTTAGCAAAAGCGCTTAAAAATTGGTAGAAAATTTTAGTTAATTATTTTATTTATAAAACAAATAGTTATAATTAGA # Right flank : CTGTATTAATGACAAATTTTTGACGTGGTCCGATCTAAAACGTTTTGTTATAGATAAATCTGTCAATGAAATTAATCATAAAAATGATCTCAATATTTCATATGAACCAAAAAATTGGACGTTCATTTACAGATATTGAATTTTTCATTGAAGTTGACCCAGATGCGAATTTTTTGGAGAATAAATTATGAGCAGAATTTTACTTGGGAAAAATAAAAGAAATGGGGAAAAATTTTATGAAGTTAAAAGTTTCAAGTATTTTATCAAATCATAATGAATCACTAATGAATATTTTAGGTGAAGATAATTTTGATATATTAAAAAATCAATTAGAGGTTAAGTAAATGAGTTTTAGTTTTATTAAAAATAAAATATTTACTAAATATAAATATTATGATTTATTCTATACCAATTCTGATTGGTTTACATTTTTTGAATTAAATCATTTTGAAGAAAAATTTATAATTGATGATTTAAATTTTTCTAATGTCACATTAATA # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATACACAGGGATAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GTGTTCCCCGTATACACGGGGATAAA with 93% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [71.7-88.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 10077-10284 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHP01000054.1 Gilliamella apicola strain Nev6-6 Gilliamella_apicola_Nev6-6_contig54, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 10077 28 100.0 32 ............................ CGCGGTACACCGCAGGCGGTAAATTCGTTTTT 10137 28 100.0 32 ............................ AACCTAAAAAAATACCTCGGTGAACTCAATAA 10197 28 100.0 32 ............................ TGTTAACATTACGCCCGTTTTTGCTGTTAACA 10257 28 92.9 0 ........................A.T. | ========== ====== ====== ====== ============================ ================================ ================== 4 28 98.2 32 GTTTACCGCCGTGTAGGCGGTTTAGAAA # Left flank : ATTTTATTAGCCAAATTGGACGATTATGTGGATTATGTTGGTGAAACCAGTCTAATCGACTCTCAACAGAAACCGGCTCCGTGTCGGCAGTAACTTGCCTGCCGGCAATTGTTGAATTATAAACATCAACAATAAAAGGCAAATCGGTTAATGTGGCATCTTGATAAGTAATCATAGCTTTTGTTATAAGTGATTAAAGTAATTTTATTGTAGTTTTATTATTTGTTTTAGGCAATAAAAGATATTTTTTCAACAAAGAAGATAAAAGCCAATCGTTTGTTATTTTATCAAATAATATTAGGATAATATTGTTTAATAATACTGGATGCTGACCAAATGGGTTGTTATCATCCTACCAAAACCCTTGCCAACCCTTTTTTTTAACAATAAATTAAAGTAAATAAAAACAAATAGTTAAAATGATGCCTAATAAAAGGGTTTTTGAGGATAAAAATCTTATTTGCCTTTTATTAAACAACGTTTATAGTATATTCGATTCT # Right flank : ATTTTTCTTTATTGTTATATAGACCATGCCTGCCTGCTAATATATAACCATATTTCGCTAATTAAAAAATTAAATAAAATCAATGGTTTTTCTGAACGATTTTTATGTGTAAAATGGACTAATTTTTATATTTATTTTTGTTAGTTAACTCATATTATTTTTAAGTCAATTCATCTTCTCTTTAAATTAGAAAACATAAAATATTGTAATGTTAAATAAATATGTTAATGTGCTTTATGTTGCTTTTTATCTATAAAAGCAATATTTTTTTGTTAAAAATTTTATACAGAAAGTTAAAATAGTCAGTAGAAAGTTATTACGTATTTTTGAAAAAAGCTTTTAATTAAATTTGATGATAGAGGTGAAATTTTTATTAGTATGATTTTATACCATTAAAACAACATAAAGTCGATTTTATACAATATGTTATGCTGTTTTAATGGGACATATTTAATATAATGCGTAAAAATAGCAATTTTGAGTGGCTTAATTACCTATAT # Questionable array : NO Score: 5.77 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTACCGCCGTGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-9.70,-9.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [76.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 83091-81409 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHP01000053.1 Gilliamella apicola strain Nev6-6 Gilliamella_apicola_Nev6-6_contig53, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 83090 29 100.0 33 ............................. TCTGTTTGGCGAGTACTGGCAACCATTTATCGA 83028 29 100.0 32 ............................. CCACTAATGTGGCTTTGATATTTAATGGAAAA 82967 29 100.0 32 ............................. TCTTACACCGAAATTAGACCCCAGCATTTTAA 82906 29 100.0 32 ............................. TAAATCAATATATAGCAAATAAGGAGAAAAAA 82845 29 100.0 32 ............................. GACATCAATTGTTAACCGCCCCATGTCTGAAT 82784 29 100.0 32 ............................. TAATCACCTTTACTGTTGGCTTGGATGGGTAT 82723 29 100.0 32 ............................. CTCAATAACTAAAGGCAATTCATTGCACTTAT 82662 29 100.0 32 ............................. CAATTTCGTCTTGGAACCTAGTAATACGAGAA 82601 29 100.0 32 ............................. AATTGGTGGCAAATTTGATTTTGAAGAAAAAT 82540 29 100.0 32 ............................. GTATTATTTTGACTGTTGAGCAATGCCAGTTG 82479 29 100.0 32 ............................. TCGAATGGACGGCTGGGACTCAATCACAAGCA 82418 29 96.6 32 ............................C ACAAAACACCCAAAATTCAGGGGCTTGGTTAA 82357 29 100.0 32 ............................. TTTTTTCTGATGTTTTTTGAGGGTAATGCCAC 82296 29 100.0 33 ............................. GAATATCGGCTACACAACTAGAATCGTATCGCC 82234 29 100.0 32 ............................. TCTTGCGCTAATCGCTGGTGTTGTATCAAACT 82173 29 100.0 32 ............................. CAATCCAAGCCTCTGGATAAAAAAATACTGAT 82112 29 100.0 32 ............................. TAGGTACAAAAAAGGGCGTATACTTGCTCGCC 82051 29 100.0 32 ............................. AGGCGGACGAGATAAAAGCGCGCGTTAAAGAG 81990 29 100.0 33 ............................. TGCTGACTGCTTGTTTTGCCGCCGACAGCTTGA 81928 29 100.0 32 ............................. ATCAATCAATTTGTTAAAATATTTGCTCGAAA 81867 29 100.0 32 ............................. AATATCGGCTACACAACTAGAATCGTATCGCC C [81839] 81805 29 100.0 32 ............................. CCCTGATAGTTTGAGGAATCCCAAAATAGCTT 81744 29 100.0 32 ............................. TATTTATAAAAATACCAATAAGAAATGTAGAT 81683 29 93.1 32 ............G...........A.... AACGCTATCAAACAGCACGAGAGCGACTTAAT 81622 29 93.1 33 ............G...........A.... ATTTCGATGTTATCCCCGTTCATGATGGCGAAA 81560 29 93.1 33 ............G...........A.... ATTTCGATGTTATCCCCGTTCATGATGGCGAAA 81498 29 93.1 32 ............G...........A.... AGCACAAAAAAATGACGACGAGAACGAAATAA 81437 29 89.7 0 ............G...........A...A | ========== ====== ====== ====== ============================= ================================= ================== 28 29 98.5 32 GTGTTCCCTGTATGTACAGGGATATACCG # Left flank : CTTATTGAAGAAGTTTTGTCAGCCGGTGGCATTGAACCGCCACCGCATCCAGACAATGTTCAACCCCCCGCTATTCCCGAACCTCAATCTCTTGCCGATAGCGGTTTTAGGCGTCGCTAATAATGAGTATGTGTGTTGTTGTAACTGAAAATGTTCCAGCTCGATTACGAGGCCGTTTAGCCATTTGGTTACTTGAAATTAGGGCTGGGGTTTATATTGGTGATATATCAAGACCGATAAGAGAAATGATATGGCAACAAATTATTAAATTTGCAGAAGACGGTAATGTTGTCCTTGCTTGGGCAACTAATACTGAATCAGGATTTGATTTTCAAACCTATGGTACAAATAGAAGAGTTCCGGTAGATCTTGATGGGCTACGCTTAGTATCATTTTTACCTATTAAAAATCAATAAGTTAATTTTCTTTAAAAATTAGAAAAATTTGGTAGGATTTAATAGCAGATATAAGTTTAAATAAAACAAATATCTATATTTAGA # Right flank : ATAGAAATTTCATTGATATTTTTATCAAATTTGATATAATTATTAAAAATAACAAAACAGATTGATTAAATGTTTACGATAAAAACGCATGATGATGCTAAATCTGAAATTCTAGATTTACCCGCAGAATTAATAGGTCGAACAATTAAATTGATTGAAAAACTAGAACAATTTGGACAAATGCAAATGCCACATAGTAAATCGTTGGGGGGTGGGTTGTTTGAATTGAGAGCGTTAGAGCGTAATAATATAGCTAGAACTATTTATGTTTATCAAAAAGAGCAAACGATTTTTATTTTACATGCGTTTGTTAAAAAAACACAAAAAACACCAGTTGGCGCAATGCAAATAGCGAGAATCCGACTGAAGGAGATGATTGAAAATGAATAAAAAACACAGCACAACATTTAATGAAATCAAAGATATAGCGCTAGCAGATCCTGTAGCGCGTGCGGCATATGATGATGCAGAGGACGAGTGGAAATTACGTGAATTATTGT # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCTGTATGTACAGGGATATACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:51.72%AT] # Reference repeat match prediction: R [matched GAGTTCCCTGTAGGTACAGGGATATACCG with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-8.20,-8.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [4-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [86.7-81.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 51216-50887 **** Predicted by CRISPRDetect 2.4 *** >NZ_LZHP01000065.1 Gilliamella apicola strain Nev6-6 Gilliamella_apicola_Nev6-6_contig64, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 51215 28 100.0 32 ............................ TGAGTATCCAATTGTTTTAGCTAAAGATTTGA 51155 28 100.0 32 ............................ TCAAACAGGAGAGGATGTAGTTGTTAAACTGC 51095 28 100.0 32 ............................ TGAAAAAGAAAATATATACATGCCGTATTCAA 51035 28 100.0 33 ............................ CGAACGGGGAGGATGTTAATAAAGGGTGGCATC 50974 28 100.0 32 ............................ ACACAGGAGTAATAACACCAAATTGTGGTGTA 50914 28 96.4 0 ..................A......... | ========== ====== ====== ====== ============================ ================================= ================== 6 28 99.4 32 GTTTAACGCCGAGTAGGCGGTTTAGAAA # Left flank : ACAGAAAACATCATACCAACTATTCGTTTTTTCATAGTATCTTTAATTAAATTTAATGAGGTTAAATATAGTTCAATTGTATCATGATTACTTAGAATAAAAAAAATAAAAAATTTTTCGTTATTTAAATGGCATTATCTTTGCAAATTTATTAGAATAAGCCTCCTATGACCTCATAGTTAAATGGATATAACGAGCCCCTCCTAAGGGCTAGTTGCAGGTTCGATTCCTGCTGGGGTCAAAACCCGCCAAACAGACACAGCTTTACATTGATATCCGCAATAAACTTTGATGCTCACTATAAATCAATTAAGTCAATTTTGTTGTACAGTAAAATTTACGCCTTATCAAATCATCTAAAGCTTTATAACCCTTTTTTTGAGCTGTAAAATAAAACAAATAAAAACATTGTGTTAGTGATTTTCTGCAAAAAAGGGTTTTTGGAGACAAAAATCCTATTTGCCTTTTGGCAAACAAAGTTTATAGTATGTTTGTTTCTA # Right flank : ATTGCGGGGGCTCGCACCTCCCAAAATTTATAGCTTAACGCCGTATAGGTGTTTATTTTATATAAAAATAATATCTTAATGATTTATTTTAAAAATTTAATAAAGCAGTAAGCTGATATTTTACAACACTCGAAGATAATTATTGCTATTTATTCAGCGTTGAATAGTGTTGACGCTCTAGGTTTGTAATTAGCAAATTTTATACTCAAACGCACATCCACCTAAAAGTTTTTACATTGTGATTTATCGAGTTTTGATAGCGTTACATTTTTAATTACAAAATAACGCTAGCATTAATGTTGAAGATAAAGAAATAGCTAATATTACTATAACAGTAGAGCTTTGTGCGTATTTTAATTATGTGGCAATGATCGTTCCTCAGAATAGCTCGTTCATTTTACAATTTTGTCTTAGATTGATGTAGGTTTACCACGAGTTGTCCAATTAAAAATTTGGTAGCCAGATACTATTTATTATTTTTAGTGATAATTAATTTATCA # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTAACGCCGAGTAGGCGGTTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.80,-7.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.05 Confidence: HIGH] # Array family : NA //