Array 1 55893-59020 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRID01000017.1 Roseburia intestinalis strain AM22-21LB AM22-21LB.Scaf17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 55893 36 86.1 29 T..C..T..T...A...................... CGCTAGGATGTGATCTTGATACCGTGATT G,C [55897,55906] 55960 36 100.0 30 .................................... TACGCTGTTTTTCATGTCATAGCCCAGTTC 56026 36 100.0 30 .................................... TTAAGAAATTCCACTGCTTCCTGCTGTAAA 56092 36 100.0 30 .................................... TTAAGAAATTCCACTGCTTCCTGCTGTAAA 56158 36 100.0 30 .................................... AAATTATGTAAGACATTTTGACGTAACTGG 56224 36 100.0 30 .................................... GCATGGATAAAATAAAATTCAGCGGCAGAT 56290 36 100.0 30 .................................... CAGTTATCAACGATTCCATAAACAGCAGCT 56356 36 100.0 30 .................................... TATTTTTAATATTACAAGAGAGAATATAAT 56422 36 100.0 30 .................................... TCTAAAACCTTTGTACTGTTTTAACTCTCT 56488 36 100.0 30 .................................... CCCTTGCATATCTTATATTGCGGATCCGCT 56554 36 100.0 30 .................................... ACTTAACAGCTTTGTAAGCAGTTAACTTGC 56620 36 100.0 30 .................................... ATATTTGTTCGACTTATCCAAACAGCAACC 56686 36 100.0 30 .................................... TTGCTATGATATATGTATTTCTTTTTCATT 56752 36 100.0 29 .................................... TAATGCCTATATAGAGCCTTTCCGCACAA 56817 36 100.0 29 .................................... CTTTAAGTGCTCCTCCAGAGCACGAAGCA 56882 36 100.0 29 .................................... TGTGGAGCATATTGCAGAAGATCCTGCAG 56947 36 100.0 30 .................................... CCTGCCGTGCTATCTCTGGTACGTTCTGCC 57013 36 100.0 30 .................................... ATCGGTAAATGTCAATACAGGGATAATTTC 57079 36 100.0 30 .................................... GCACCGCATAACCAGTAGCATTGCACAGCT 57145 36 100.0 30 .................................... TTTTGTGTCTAATTTGACTACATATTCGTA 57211 36 100.0 29 .................................... TTAAAGTAATAACAGCTGATCCTTTCCCA 57276 36 100.0 30 .................................... TCCCATAAGCCAATCCAAAACTCTCGGAAC 57342 36 100.0 30 .................................... CGGACAAATTAAGCAGTTTGAGTTTGAACG 57408 36 100.0 30 .................................... TCAATGTGTAAACAGGCTTTTCGTGGTGGC 57474 36 100.0 30 .................................... CAAGCGGACAGCAGATCATTAAGCTGACCA 57540 36 100.0 30 .................................... AAAGGAGGAAAAAAACAATGGCAAACGAAT 57606 36 100.0 29 .................................... TGCTATGTCACAGGTTACAACCGCACCTA 57671 36 100.0 30 .................................... AAAAAAGTTCCTCACCGTGAGGACACGCCA 57737 36 100.0 29 .................................... TCCAATCCTTCATGTTTTCCCTTTCTAGT 57802 36 100.0 30 .................................... ATATCATTGATGATCGTGTAATCACTCTCG 57868 36 100.0 30 .................................... TGATGGATGCACTGCCTGCATCTCCATAGA 57934 36 100.0 30 .................................... TGTACCGCCACGCTCTACACGCTCTGTAGC 58000 36 100.0 29 .................................... AAGAGGGTAAACAGACGGGAAATAGTGCA 58065 36 100.0 30 .................................... CTGGATGATTTGTCGTATTTGTTCCCATAT 58131 36 100.0 30 .................................... TGTACTGGCAGAATCAGGAAACACCCAATC 58197 36 100.0 30 .................................... CAAGGCATTGCAAAAACAACGGGTGCTACT 58263 36 100.0 30 .................................... AAACTTGAAGCTCACGAGCACGAAGCAGCT 58329 36 100.0 29 .................................... TCCGATGAAATCGGGCATGAGGGTGGAAC 58394 36 100.0 30 .................................... TTTATAATGTTGCCCGGCTGCATATCCAGT 58460 36 100.0 30 .................................... CGGGGTTAGTATTACCCCCGACTTCTGTCG 58526 36 100.0 30 .................................... CTAATCTGTCCTGTCATAGCTGTTAAAACG 58592 36 100.0 30 .................................... AAACGCCATACTTTCATTCGGTGTCACCCC 58658 36 100.0 29 .................................... CCAAACCGCTTTTTCATAGTGCTAAACCG 58723 36 100.0 29 .................................... CAACACTGTTTCCTGTAATGCCATTCTTT 58788 36 100.0 30 .................................... TGTTCTCAAACGTGCTTTTACACATTTGCG 58854 36 100.0 30 .................................... ATAAACAAACCAAAATTTGGCTTGCCCTCT 58920 36 100.0 29 .................................... ATCTATTAATTTTTGGGTGCAGACTTTTA 58985 36 100.0 0 .................................... | ========== ====== ====== ====== ==================================== ============================== ================== 48 36 99.7 30 GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT # Left flank : ATAAAACTGCTACAGTACGAATCTTCGCATTTTTTTTGTACATTCTGCCACCCCTTTGGCCTTCCAAAGTCATATTTTAAATTTCTGTGACCATTTTCCCATGTCCTTTATTGTAACACTCTTCATTTATGAGTTCTACCCCTAAAAAGTATCGTTTTCATTCTGTTTTTCTTTTTTCGCCGTAGATCCGCACTCACATTTCTATTTCGGTATCCAAAATTTCTGTTAAATTTTTCTGTTAAATTTTTTCAAAAAATTGTTGACAAATTACTTTTCCCATAGTATGATATCAAATGTGTCTGGCAGACAGATACAAAACAATTTACATATGCGCGAGTGGCTCAGTTGGTGGAGCACGACCTTGCCAAGGTCGGGGCCGCGGGTTCGAGTCCCGTCTCGCGCTCTTCTGTTGAGAAACAGGAAACTTTGATTTACAAGGTTTCCTGTTTTTTGTTGTAGTGTGAAAGTTGATTACAGTTTTTCCGTAATTTCAATATACT # Right flank : TAGGGAGCACAAATCCCCACGAACTACAGGGATTCGTGGGGATTTCATCTAAAAAAAATCTTTAATTTGGAAGTTAAATTCTATCGAAAATCTTCTTTTTTCAAAAAACATCCATTAATTCTATCGATTCAGGGGTATCCTCAAATGTTTTTGTTCCCAACATGACTTCCATAGACTCATACTGCTTTTCTGTTAAAACCAGCGCACGTACAGATCCTTTTATAGGCAGATTTTGTTTTAAACGCTGTTTATGCATTGCAACTGCATCCATACCATTGCATATCCTGGAATATACAGACCACTGCACCATATTGTAGCCATCTTTCAATAAAAACTTACGAAATTTTGCGGCATCCTTTTTCTCTTTTGCAGTTACTACTGGCAGATCAAAAAACACTAACATTCTCATAAACCTATTCATAGCTATGTACCTGTAATTGCATCAGTTCCGGCAACTCCAAATCTAATCTTTTTCCCTGCAGAGCACTACTGTAACTTGC # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTGTAATTCCCTGTTATCACTTGGTATGGTATAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-1.40,-2.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-56.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.77,0.78 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 142007-141114 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRID01000006.1 Roseburia intestinalis strain AM22-21LB AM22-21LB.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================== ========================================== ================== 142006 34 100.0 39 .................................. TATTACTTCCGAATCGTTCGCAAAAAAGATTTGAATAGG 141933 34 100.0 42 .................................. TAACTCATATTATAGCCCCTCCTAAGGCTTAAATAGGGTAGA 141857 34 100.0 40 .................................. TACCAGTTTATCAAAGACCGTAACGAAATTGTAGAACTTA 141783 34 100.0 35 .................................. TACGCTCAGTTTTATCTTCTCCAACTGCGTACTTA 141714 34 100.0 38 .................................. TGCATATTCATATCTTCGTTCATTTTTCTCCTTTCTGA 141642 34 100.0 37 .................................. TACTTCATGTTTTGACGCATTATCTAATACTACTGCA 141571 34 100.0 37 .................................. TTAATCGGTAAACGCTGCTATGTGGCTTGCAAGCAGA C [141552] 141499 34 100.0 34 .................................. TTGTACTTTGGATTACCTTTGATATTTTATACTA C [141480] 141430 34 100.0 37 .................................. CCATTCTTCCGGCGTGCCGATTGCGCGGTACTGCTAC C [141410] 141358 34 91.2 36 ..........A...T.....G............. CGTAAAGCCTTTATTCAATTATCAATGTACTTGAGA T [141339] 141287 34 88.2 34 .........TA.......CG.............. CCAGATGGGTTTGATTTTTCTTGCATCTTCCTGA A [141262] 141218 34 91.2 37 ...................AG..........A.. CTTGAAAACCTGCCCCGGATAAATCAAATTAGGGTTT 141147 33 76.5 0 .C.......TA........CTA.......-.A.. | A [141134] ========== ====== ====== ====== ================================== ========================================== ================== 13 34 95.9 37 ATTGAGATAAGAGACCCCGTAGAGGGGACGAGAA # Left flank : GTTTTCGGGTTCAGAAATCGGCATTTGAGGCGATGATTACGGAAAATTTATATCGACGTCTGTTACATGATATTCCAGAGCTGATTGACCGTAGATCGGACAGCGTAAGAGTTTACAAAATAAGAGGATACGGAGAGGTTAATCTTTTTGGGGCAAGTCCTGAAATTAAAAATGAAGAAGTGATTATTATAGGGTAATATGACAAAAGATATATTATAAATACACTGGGCAGAAATTATGTTGTGCATAAACATACCAAAGACCTGTAGCTTAAACTGGCACCGCATGTCTGTAAATGTACAAAGTATCAGGGAAAGCTGTATCATATGGGGATGGGGAGGATTGAATTTGAGGAAATATAATGATTTTGCTCCGATAGGCTTAAAATCAGGCTTTGAGAATGTTATACACCAGTTTGATATTGAGATTTCTCTCATTTGCGGGTTTGCCCCGCAAATGGGGGATAAAAGCCTTGTGTTTTGGGAGGTGTAGGGGACAGG # Right flank : TGAGAATAAATTTTTACTAAATAACCATGCAGGAAAATTAAATCATTATTACGAAAGATGGAGATTATTATGAATCAGACGATATTGTTTACACCAGTGGGAGGAACCGACCCGATTTCATTAAATAATTATCATGATGGATCAATACTGCATATTTGCAGATTCTATAAACCGGATAAAGTCATTTTGTACATGTCAAAAGAGATGTTGGATTTTCAGGAGAAAGATGACAGGTATCGTTATTGTCTGGACCGTCTGGCAAAGATGCAGGATCGTCCCATGGTTTATGAGATCATAGAACGCCGGGAGCTTACCAGAGTACATGAATTTGATTATTTTTACGAGGATTTCAGGAAGGTGATCAGCCATATATATGAGACGATGGATGATTCAGATACACTGCTTTTAAATGTGTCATCCGGTACGCCTGCAATGAAAAGTGGATTGCTGGTATTGCAGACATTAGGGGAGTTTCCTGCAAAAGTAATTCAGGTGGCGAC # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAGATAAGAGACCCCGTAGAGGGGACGAGAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [58.3-43.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 2 144295-143753 **** Predicted by CRISPRDetect 2.4 *** >NZ_QRID01000006.1 Roseburia intestinalis strain AM22-21LB AM22-21LB.Scaf6, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================= ================== 144294 36 100.0 34 .................................... ATATTTAATCTTTTTGCATGCGTATTACTGGTTA 144224 36 100.0 35 .................................... CATAATAAGAATCAAGAAGATTATTTTCATGAAAA 144153 36 100.0 38 .................................... TTTAATAGAGATGGATTTGTAACAGAGAATATCATGGA 144079 36 100.0 39 .................................... GTCACCTCATTCCAACGCAAAGGATTGTTTATCTGGTGT 144004 36 100.0 35 .................................... AATACCCCAGTTGTTATAAGACCAAATTTAAGACT 143933 36 100.0 34 .................................... AAAACCCATATAACCGTCTGGGACTAAATAACCT 143863 36 100.0 39 .................................... CCCGTCGGGGAATGATCGGAGATTCTCACGTCGAAGCTG 143788 36 91.7 0 .....A...TA......................... | ========== ====== ====== ====== ==================================== ======================================= ================== 8 36 99.0 36 ATTGAGATAAGAGAACCCCGTGGAGGGGACGAGAAC # Left flank : TTGACACGACAATCTGCCCGTATCAGATGGAAGATATCATAGAAGCACTGAATATTTTCCAGAATATCTGTAACCAGTATTTTTATGCAAGATTCCACTGGGAGGCAAAGGAAAAAAATACAGTATGGTTAGGTGGAGGATGTGGTTTTCTTTCAAAGACGGTTTTATATCCATTGCTTGGCAGTAATGCAGTAAAAGTTGTGGATAATGTGTTTAAAAATACACTTGGAAAAAATTATGTTGTGCATAAACATACCAAAGACCTGCAGCTTAAACTGGCACCGCATGTCTGTAAGTGTACAAAGTATCAGGGAAAGCTGTATCATATGGGGATGGGGAGGATTGAATTTGAGGAAATATAACAATTTTGCGCCGATAGGCTTAAAATCAGGCTTTGTGATCGGTATGATCCAGTTTGATATTGAGATTTCTCTCATTTGCGGGTTTGCCCCGCAAATGGGGGATGAAAGCCCTGTGTTTTAGGAGGTGTAAGGGACAGT # Right flank : CTTTAGCTGTTTTTGTTATATACTTACACAAGTATAATTGAAAAAATTTCCACTAAGGGGACAAATAAAAAACAAGGGAGGAAACACATGAGTTATCTTTATGTCAGTGAACAGGGTGCGAGTATCGGGATAGAAGCAAACCGTTTTCAGGTAAAGTACAAAGATGGAATGATAAAAAGTATTCCAGCGGAGACGTTAGAGATGATCGAAGTATTTGGCAGTGTCCAGATTACGACACGCTGCCTGACGGAATGTTTAAAACGGGGAGTGAATATCCTGTTTTATTCCACAAGCGGGGCGTATTATGGAAGGCTGATCTCAACTTCCCATGTGAATGTGCAAAGACAGCGTATTCAGGCGGAAATCGGACACAATGAAACATTTAAACTGGAAATGTCAAAAAGAATCATTGATGCAAAGATCCGCAATCAGATTGTTGTTTTGCGCAGATATGCGCGAGGCAGAGATGAAGATATTCATAGAATGATCATTGAGATGCA # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATTGAGATAAGAGAACCCCGTGGAGGGGACGAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,13] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-6.30,-7.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA //