Array 1 130097-121194 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP061742.1 Rathayibacter toxicus strain FH79 chromosome, complete genome Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 130096 29 100.0 32 ............................. GTTCCCTCCTGGCCCTCCGGCTAGGCCGTGGT 130035 29 96.6 33 ............................T GAAATTCGTGGTCGTAGAAAAGTCAAGTCCTCA 129973 29 96.6 35 ............................A ATGTACGAGTCGTCCGCCAAGGTTAAACCATGGGA 129909 29 96.6 32 ............................T GTCCCGCGCGGACTGGCGTGGAGCGAAATGGA 129848 29 96.6 33 ............................T GATTTCGTGTTTGGGTGTGTAGAAGTCGGTTGG 129786 29 96.6 33 ............................T GTCTGAGCTAGATAGCCATGAGTAGTGGCATGC 129724 29 96.6 32 ............................T CGGTAGCCAGACCTCGACGCTGTGGCTGGACA 129663 29 96.6 33 ............................A TTGTCAAGACGATTATTCGACTTGTCGTCATCA 129601 29 100.0 32 ............................. AATCGTTGAACACGCCGAACAACTCATTGAAG 129540 29 100.0 32 ............................. CCGCCCATTATCGCCACGAATGGCATCTAAAG 129479 29 100.0 32 ............................. ACTGGATGGCCTTGTTAAGGGCGGCATTTTAG 129418 29 96.6 33 ............................G ATAGTGTTATCTTTCGGTTCAACAATAGCAAAA 129356 29 96.6 32 ............................T GCTGCACGGCGCGGACAATCTGATCCTTTTGA 129295 29 100.0 32 ............................. TATTCTTCATACGTCGCACGAGATGAAGACTT 129234 29 96.6 32 ............................T CTGTGACGTCAGTTTTCTGGGGTTGGGGTCGA 129173 29 96.6 32 ............................A TCTGGTGAGAATCGCTACTGTAGACAGTGCGC 129112 29 96.6 32 ............................T GGCAGCCCTATCGAGCTTTCTGAGGACCTCGA 129051 29 96.6 32 ............................T CAACTTTTTGGAGGCGTATCATCCGTGGGATA 128990 29 100.0 32 ............................. AGCTAAAGTGAAATAACCGTTATCAGCGTTAC 128929 29 96.6 32 ............................G TCATCCAGCTGTGTATCTGTCCACTGCCGCCA 128868 29 100.0 33 ............................. TTAAAAGGGTTTTGCTTCCTTTTATTGATTTTG 128806 29 96.6 32 ............................A TCGGTATCGGCGCTTTCGTGAGCCTGCAAGGC 128745 29 96.6 33 ............................T TCTTCAGCGAAGAGAGGTTCACCTTCGCATGAG 128683 29 96.6 32 ............................A AGTATGCTCCTCCGTCAAATCGGCCTCAGCGC 128622 29 100.0 32 ............................. CTCGACGGTCTTGCCGACGGCATTACGAGTAT 128561 29 100.0 32 ............................. ACAATAGCCACACTCACCGGCTCGGCCAATGC 128500 29 100.0 32 ............................. AAAACCGAGTGCATCAACGGTCACCCGTTCGA 128439 29 96.6 32 ............................T TAGCCCTTCTTTCTAAGATACGGAGTGTCGAC 128378 29 96.6 32 ............................G GCGGCTTTCGGAACCGAGATCGATTTCAGTGA 128317 29 96.6 32 ............................T GTTAAACGTGATCCAGGCCCCGCAGATGATAA 128256 29 96.6 32 ............................T GCGAGTCGAGGCACCGGCTCACCTGTCGACCC 128195 29 96.6 33 ............................G GATTCGACGGCTTCATCCGACAGAACGTCAGGA 128133 29 96.6 32 ............................A ATTTAATCCCGCGGGCGCGGATACTTTTACTA 128072 29 100.0 32 ............................. AAGAACGTCATCCCCGGCTTTAGCGTCAACCG 128011 29 96.6 32 ............................T TCGCCTCGGCTGGCCATGTATGAGGTGAGTAG 127950 29 100.0 32 ............................. GATCGGCCCCGCTTTTTTAGGCCAACCTTTTT 127889 29 96.6 32 ............................T ACCCGCCCCGAGGAAGAGGTTAAGCGGTCTGA 127828 29 96.6 33 ............................G TCGACAATGTCGGCGTTGGTGGTCATGGTGGTC 127766 29 100.0 32 ............................. CCCTTCCCGTCACGCTGCACCCTCGTGTTTTC 127705 29 100.0 32 ............................. TCTGCGGTAGTCATCTCACCAAACGTATCCAA 127644 29 96.6 32 ............................T TGCACATCGCCCGTCGCGCCGAGGTTACCGGA 127583 29 96.6 32 ............................T ACTGATGTGGTCGCGATTGAGCTGAAGATCGA 127522 29 100.0 33 ............................. GAAGCACAACTCCGCCAGCAAGACACTTATGTT 127460 29 100.0 32 ............................. TTTTCCGGCAATCTCCGCGATATTGGTCTGGA 127399 29 100.0 32 ............................. GACAAGGCGGTCCACCGGAATAACTTGTTTAG 127338 29 96.6 32 ............................T TCCAGCGCCTTCTGAAGCTTTTTGCTGGCGAG 127277 29 96.6 32 ............................G ACGGGATGTAGTAGTAGTCCCGTCCCCCTACC 127216 29 96.6 32 ............................G CCCATCTAGAATGGGATATAAAGGGTCTCGTT 127155 29 96.6 33 ............................G AGGATGGTGGCCCGCAGGATGCTCGCGATTCTG 127093 29 96.6 32 ............................G GAATACCGACATAACCTGCGCATAAGAAGATG 127032 29 96.6 33 ............................T CCGTCAGGCGAAGCGTCGCCCGCTGTCGTCTTA 126970 29 96.6 32 ............................T AGCCGCGAGAACCTCGGCCGGTGCGCCCGCAC 126909 29 96.6 32 ............................T ACGCAGCACCCTATCCTTCAAAATCACCATTT 126848 29 100.0 32 ............................. AATACACCCGAATACAAAACAGTTAAACCGGC 126787 29 96.6 32 ............................T AGCCGTGCGTATTGGCCGGGGGTGGTTCGCCG 126726 29 96.6 32 ............................T AAATATCGAGACCCGCGAACTTATCCTTCGAC 126665 29 96.6 32 ............................G AGTGTCGGCCACTTCGCCGGGGAATTTTGGGA 126604 29 96.6 32 ............................T TCACGCGGAGAATAATCTGACTAACACTTTCG 126543 29 96.6 32 ............................T AGCGTCACCAGAATCGCGACCATCCTGCGGGC 126482 29 96.6 33 ............................A CCAGGGCCTAGCCGGAGGGCCAGGAGGAAACGG 126420 29 96.6 32 ............................T ATTTTGGGAAAAACTTTCAAAACTTTTGTAAA 126359 29 96.6 32 ............................G CCCCCTTGGCCATCCCTTTTAATCAGCTTGCG 126298 29 100.0 33 ............................. TTTAGCGGCAATCTGCGCGATATTGGTCTGGAA 126236 29 100.0 33 ............................. GTTACGCTCATCAGCCATACCACCGAGCTCAGC 126174 29 100.0 32 ............................. TTAAAGGTGCCGTTACGCCCAATAAGGACGTG 126113 29 100.0 32 ............................. ATACGCCTAAAAGACAGAACCCGACCGAAATT 126052 29 96.6 32 ............................T TGTATTAGCCTCATCATAAGGATGACCCATTT 125991 29 100.0 33 ............................. AATCGGCCCCCGTGGATACTGGGGCTTATCGTG 125929 29 96.6 32 ............................G GCGACAGGGGCGCGCGCGACATCCCCGAATTT 125868 29 100.0 32 ............................. TTAAATCGGTTCTTGTTGACATGAGTTCTCAA 125807 29 96.6 32 ............................G CTCGTGGATGTGGTGTATGATATCGATTTTTT 125746 29 96.6 32 ............................T AGGGGTAGCGACAAAGGTTATTCAGTCGCTCG 125685 29 100.0 32 ............................. GATTGTTCGACGGAACATCATCCCAGTGGCAA 125624 29 96.6 32 ............................T GCGGGCGACTGATGAAATAGTCATGCAAAGAA 125563 29 96.6 32 ............................G GAACACAACGCGGGGAGGCATCCTAAAGGTAG 125502 29 100.0 32 ............................. AGTCTCGTCACAACCCGCCGCAATCACCGACG 125441 29 100.0 32 ............................. GCTGCGGTCGTTGCGGCGCGGCATTATCCCGA 125380 29 100.0 32 ............................. GGATTTTTCGCGGTACGTGTACAGTCGTCGGT 125319 29 100.0 32 ............................. ATCAGCCAACTATCAGAAACCCCCCCAAACGG 125258 29 96.6 32 ............................G TAGTGCCGCGAGAAGCGGTGACCCGGGCGGGA 125197 29 96.6 33 ............................G TAAAGCCCGAACAAGACTCGGGATCACCCCGAA 125135 29 100.0 32 ............................. CCGCTGACGACGGGTAGCTGGCCTTCTATCCT 125074 29 96.6 32 ............................T GCCGCGCCGCAACGACCGCGGCGTTAGGTTCT 125013 29 96.6 32 ............................T ACCTGCTCAAGATAGCAGACCAGGTGGCCGCA 124952 29 96.6 32 ............................T ATTGTAGATGTTCTTACAAAAATCCTGAAAAA 124891 29 96.6 32 ............................A TTCGTGGGTTCGCGCCCGTTTCGGGCTGCCCG 124830 29 96.6 32 ............................G TCTTCGATAAGATCTTCCGCATACTCGACGAT 124769 29 100.0 32 ............................. TCCACGGCCACTAAAACCTTCGATTTTTCTAC 124708 29 100.0 32 ............................. CGCAAGCGCTTCCACCATCAGATCGGCTACCT 124647 29 96.6 32 ............................G TGCGCTTAGCGTGGATTTGCGGGAAGCATTCC 124586 29 96.6 32 ............................T TTTGGCGAGAAGGCTCCAGACGATTTGGCCGG 124525 29 96.6 32 ............................T TTGGTCCGCTATTCTCCTCACTGATGTGACAC 124464 29 100.0 32 ............................. ACTAGGTGAAGTACCGATTCGAGACACCAGCA 124403 29 100.0 33 ............................. AAGGTGAGGGCTCGATTTTTCTACGACAACGAA 124341 29 100.0 33 ............................. GACCGAGTATCCCATTAGAGACCAGTGCCAGTG 124279 29 100.0 32 ............................. ATCGACAGGTGCCTTTATGGAACCTTCCCCTA 124218 29 96.6 33 ............................A CGCTTTAGTGGTGGTGGATCCTAAGAACGCATC 124156 29 100.0 32 ............................. CTCGCGACTGCCCGCTATTATCAGTGCGGCCG 124095 29 100.0 32 ............................. CTGCGGATCTTCCCTGCGTGCCCTGTCAAAAA 124034 29 96.6 32 ............................T TCGCCGGGTGGTGAAGTCTTTGAAGGCATTAG 123973 29 100.0 32 ............................. GGTTAGCCAGATTATTCTCCGAGTGAATTCGC 123912 29 100.0 32 ............................. ACGCACTTCGTGTGCACCGCATAGTGGCCTGG 123851 29 96.6 32 ..G.......................... CCTTAATATAGGCCCCGTCGGTCGGTCGGTGC 123790 29 96.6 32 ............................T AGTTGGCTTACGTAAAATGGTAGAACAGAGAC 123729 29 100.0 32 ............................. TCTAGGGGCAATCAGCTTCCCGGGCGTATTTT 123668 29 96.6 32 ............................T CGGTTCTTGTTGAGATGTCTTCTCAACAGTGG 123607 29 96.6 32 ............................T GCCGGGCTTGTTGAGCATAGGGACCAGAAAGA 123546 29 100.0 32 ............................. AAAACCTCGGCGCGCCAGGAAACGGCATCTCC 123485 29 96.6 32 ............................A CCGCTTCGCAGTACAAGACAAATTCACAGACT 123424 29 100.0 32 ............................. GAATCTAACGTTACCAGGATCTCAAAGACCGC 123363 29 100.0 32 ............................. AGTTCGGGGTCTATCTCAGGCTTTGCGCACTC 123302 29 96.6 32 ............................G CAAAACACCAATTTTAGGCGTCACATATGTCT 123241 29 100.0 32 ............................. GGCTTGATGTCCTTTTCTTCCTGAAGGATTTT 123180 29 96.6 32 C............................ CCTGCGGCCCGGCCGGTTCCCATCCTTTATAG 123119 29 96.6 32 ............................T CCTTTCGAACCTCGCTCGTGAGGCGAAGAATA 123058 29 96.6 32 ............................G TTAAAGCTTTTTGCACAATGTCATCCCGGCGA 122997 29 96.6 32 ............................T AGGGAGCCTAGCGTATTGTGTAGTACCATAAA 122936 29 96.6 33 ............................A AAGGGCGACCGGATTATGGTTTTAGATAGCAAC 122874 29 96.6 32 ............................T CCTGCCGCGGGGGTTGCGCCGACTACAGTGCA 122813 29 96.6 32 ............................G TCCAATCCGCGTCCCCAGCTTTATCCCTATAG 122752 29 96.6 33 ............................T CGGAGATGAAAGCGTGCGTCTCTCGGATGGCTG 122690 29 96.6 32 ............................G TTCACCGAGTGGTTCGGGATAATGCCTCGCCG 122629 29 96.6 32 ............................T CTTTCGTGGAGGTTGCCGACGCTTCCGTTGAG 122568 29 96.6 32 ............................T TGTCACACATTCCGGGGGCGCGGTTCCAGATT 122507 29 96.6 32 ............................G TAATCTGGCCGCCGCCTACGGAAGCGCTCCAG 122446 29 100.0 33 ............................. ATTTTCCGCGCCACCAAATGGGTTACGTATTTA 122384 29 96.6 32 ............................G CCTTAGCTTTTGCCAGGGCTGCGTATGCGTCC 122323 29 96.6 33 ............................G GGGCATGCCACTATTCTTGACTATCCAGCTCAG 122261 29 96.6 32 ............................T CGTTTCCCGGCCCCCGTATATAAAGATATTTT 122200 29 100.0 33 ............................. GTGAGCATAACTGAAGCGCAGGCGTTCTCGTCG 122138 29 100.0 32 ............................. ATTGGCTGCGACAACAATCGAGTCAATCTCAG 122077 29 96.6 32 T............................ AACAAACGCGGCAGTAGCGACAGCAGACAAAC 122016 29 96.6 32 ............................T AGCCGTCAGGGCTCTTAGCGACACCCAACAAA 121955 29 96.6 32 ............................T ATTTCGGCGTTTCTTCAAACACTTATGGCACT 121894 29 96.6 32 ............................T ATCTCATACGACCTCACAATACTCGTATGGGA 121833 29 100.0 32 ............................. AATCTTGTCAACATCATACGAGGCCGCAAAGG 121772 29 100.0 32 ............................. CTTCCCACTAACCTCACCCGCGATAGTGCCGG 121711 29 96.6 32 ............................G GTGATCCATCACTATCAGAAGACAGCTGTGCG 121650 29 100.0 32 ............................. TAAGTTCGGGGTGGGAGCCTATAAGAACTTCC 121589 29 100.0 33 ............................. TGGTAATCTGGCGCGGGCTATAGGGAGGTCCGC 121527 29 96.6 32 .C........................... GCTCGACCGCGCTTCTTTAGACCCACCTTTTT 121466 29 96.6 32 .............G............... ATCGAGAGCCGCGAACGCGTCCTTCGACAAAA 121405 29 100.0 32 ............................. TACGTCGCTAACCGGCGACAACTTCCTTACGG 121344 29 96.6 32 ............................T CTTGCCGAAGAGTGGGTGTTGTCTAGCTTGGC 121283 29 93.1 32 .............G..............G CTCCGCAAGCAGGTCGCCGCCGACGACAAGGA 121222 29 72.4 0 ..CG.....A...G.........CAC..T | ========== ====== ====== ====== ============================= =================================== ================== 146 29 97.6 32 GTATTCCCCGCGCAAGCGGGGATGGTCCC # Left flank : GGGACGGTGCGGAGCGGACCGTGGCTTCGGGACGAAGCTATGGGGAAATCGACGACGAGGAGCCCCCGGAGGACCTCCTATGATTGTGCTTGTCCTCACCGCTTGCCCTTCTGGACTTCGGGGCCATCTTTCGCGGTGGCTTCTCGAGATTAGCCCTGGAGTATTCGTTGGTCACATCTCCGCACGGGTGCGCGACTTACTCTGGGAGCGGGTTCTGGAGCTGGCGAAGGACGGGCGCGCCATCCTCATTCACTCGACGAAGGGCGAGCAACGCCTGGCTTTTAAGGTTCACCGGCATGACTGGCAACCGACCGACTTCGACGGAGTGCAGCTCATGCTCCGGCCAGCGAAGCCCTCTGAGCAGCCCACCCCAGCCTTACGGAAAGGGTGGAGCAACGCCAGCCGGTACCGGGCCGCAGCACGCCAAAAACGCGATGGCTAAACGATCCAAACTACGTCAGAATGGGGGTCCGTCGACGAAAAATCCCTGGTCAGGAAGA # Right flank : CAGTTCGGCCACTGCCGATAACATCGCACACCTCGGGCACCGAACTAGGGCGAGCGGCACCTCTCAAGCGATGTTGCCGGTCGTCGCGGGGGTGTCCACCGCGATCACCCTCGATATGAGCGCGATCGTGTCTTCACATACCTGCGCGACGGCCATCGACGGATCCGTTCGCCTGCGTCGCATATCACCCTCCTAACTTGGGAGGCAACGTCATTGGCGCACTCGTCGAAGCTGAAACCTTTGTGACACATGGCGCTGTTGGCGTCAGCGCTGCCGTAAACACGCTAATCGCCCGCGGATTCCACTCCTCAGACCGCCCTCATCGGCGCGGGCTCGGCGCGCCTTGTCATCGTGATCGTTCTCGGCGCGACAACTGTAAAAGCAATTGTTCCTCGCAGCCGGCGGAGGCATGATTTCCTTCACGAGCGTAGTTGTTGCGGCGCCCGTGGTGCTGCCAATTGTCCTTTGGTCAGTCATTGCAATTTTGCGAAGCAGCGTCA # Questionable array : NO Score: 5.60 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.46, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTCCCCGCGCAAGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTATTCCCCGCGCAAGCGGGGATGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [13-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [36.7-50.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //