Array 1 980733-982225 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050731.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST101 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 980733 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 980794 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 980855 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 980916 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 980977 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 981038 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 981099 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 981160 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 981221 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 981282 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 981343 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 981404 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 981465 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 981526 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 981587 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 981648 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 981710 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 981771 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 981832 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 981893 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 981954 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 982015 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 982076 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 982137 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 982198 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 998357-1000254 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP050731.1 Salmonella enterica subsp. enterica serovar Typhimurium strain ST101 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 998357 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 998418 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 998479 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 998540 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 998601 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 998662 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 998723 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 998785 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 998846 29 100.0 26 ............................. CGTCACTACCGAGACCGAGACCGAGA 998901 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 998962 29 96.6 32 ..........................A.. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 999023 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 999084 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 999145 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 999206 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 999267 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 999328 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 999389 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 999450 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 999511 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 999573 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 999676 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 999737 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 999798 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 999859 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 999920 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 999981 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 1000042 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 1000103 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 1000164 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 1000225 29 96.6 0 A............................ | A [1000251] ========== ====== ====== ====== ============================= ========================================================================== ================== 31 29 99.5 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.09, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //