Array 1 218868-217068 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN868944.1 Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 218867 29 100.0 32 ............................. GCAATTTCCGATATGCGACTTGGGACACCAAT 218806 29 100.0 32 ............................. TACCGAACGGCTCAAAGTATGTTCCAATTGAC 218745 29 100.0 32 ............................. GTTGAAACCAGCATTCCTTATGCTGTGCTGCC 218684 29 100.0 32 ............................. TGCATCATCTGATTCGTACGATACGGCAGGGT 218623 29 100.0 32 ............................. GGCTGACAAACGAGCAGGTTGAATTTGTCCTG 218562 29 100.0 32 ............................. CATGGTCTGTACCGCCTGCATTTCTGCATTGT 218501 29 100.0 32 ............................. GGCCGCACCGCTGGCGATCACGATTAATCAGC 218440 29 100.0 32 ............................. CGCCTCGCAAAACTGGTCGGGGTTTTTCCCCA 218379 29 100.0 32 ............................. TTCGTGTTCTAACAGCAGATCGCTGATACGGC 218318 29 100.0 32 ............................. CCAGTAATGAAACGCTGGCAACATTGACGAGC 218257 29 100.0 32 ............................. CGCAGACGGCGCAATTGGATTCGGTGATCGGG 218196 29 100.0 32 ............................. TGCTCGAGCCGACATTGATCCCGCAAAAATAC 218135 29 100.0 32 ............................. GGATGCCGATAGCGGTCAGTAATGAAAATGGC 218074 29 100.0 32 ............................. AAGATCCTGTCTCTTTTGTGCGGAGCGCCGAC 218013 29 100.0 32 ............................. TTCGTTTGATCTCCACTCACAACGGTATTGAA 217952 29 100.0 33 ............................. GACAATTAGTTCCGACAGACGCCGGTATTAAAT 217890 29 96.6 32 ............T................ CCCACGCGCGGCCGCACTGGCCTCGCGGATAA 217829 29 100.0 32 ............................. TCCGGGCCGCCGCTACCACCACTCAGCGGCGT 217768 29 100.0 32 ............................. CCTAATGGTGATGGGGCGTTTAATCTTATCTC 217707 29 100.0 32 ............................. TGGTTTAATAGTATCGGGCAGCATTTTACCGA 217646 29 100.0 32 ............................. ATCTCAATTAGTCCGTTTCCGGTTGAATCAAT 217585 29 96.6 32 ...C......................... GGGTGTACCACGGCATGATGACGGCCAGCCAT 217524 29 100.0 32 ............................. ATTGACAACAGTCTGCTTACCCGAGCTGCTCC 217463 29 100.0 32 ............................. TCCTGTCGGCGGTACGGTGGACATCCCGCAGG 217402 29 96.6 32 .........A................... CCAGTCAGCCACTGTTCTTTGCCGTACCTTTC 217341 29 100.0 32 ............................. GGGTTATAACCGGGATACCATCCGCTCCAACC 217280 29 100.0 32 ............................. CGCCACGTTTTTTGCATTTTATTGGCATCATC 217219 29 100.0 32 ............................. GGCAACTGGGCGATCATCTGGGCGCTGTTTAT 217158 29 100.0 32 ............................. GTGCTCCAGTGGGCTGCTAAGGGGCTTGGTGG 217097 29 100.0 0 ............................. | A [217070] ========== ====== ====== ====== ============================= ================================= ================== 30 29 99.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : CTTATTGAAGATGTTCTCGCGGCAGGGGAAATTCAACCGCCGTTACCTCCTGAAGATTCACAACCCATAGCGATCCCTCTTCCTGTTGCGTTGGGAGATTCCGGTCATCGGAGTACCTAACGATGAGTATGCTGGTTGTCGTTACCGAAAATGTTCCTCCTCGTCTGCGGGGGAGGCTGGCCGTCTGGTTACTGGAAATTCGAGCTGGTGTGTATGTTGGTGATGTTTCCGCAAAGATCCGCGAGATGATATGGCAACAGGTTTCCGTTCTGGCAGATGAGGGAAATGTTGTTATGGCGTGGGCGACAAATACAGAATCAGGTTTTGAGTTTCAGACTTTTGGTGTAAATCGACGTATTCCGGTAGATCTTGATGGACTGCGATTGGTGTCGTTTCTACCTGTTGAAAATCAATAAGTTAGAGATCTTTAAAAATTAGGAAAAGTTGGTGGGTTTTTTGTGCGCTAAAAAAGTATTTAAATTCAATTGGGTAGATTTAGA # Right flank : TTTCCCCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTGCCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACCGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATACCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCAGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATCACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCGT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [48.3-70.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 238472-235413 **** Predicted by CRISPRDetect 2.4 *** >NZ_LN868944.1 Salmonella enterica subsp. enterica serovar Senftenberg strain NCTC10384 plasmid 2, complete sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 238471 29 100.0 32 ............................. CACATTTCCTCAGTGTGCTTCAGAGGGTGGTA 238410 29 100.0 32 ............................. CCGATATCAAAAAAGCGTTTAAACGCCTTACC 238349 29 96.6 32 ............................T TCCTGCGCTTTGGCCAGTTTGGAACCCGCCGC 238288 29 100.0 32 ............................. GCACAATTTGTGCTTTTGCAATTCACTTTGAA 238227 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 238166 29 100.0 32 ............................. TGATCACAGAACTGACCGGGTACACCATACCT 238105 29 100.0 32 ............................. TAACGCCGTTCTGCATACGCTCTACCGCGCGC 238044 29 100.0 32 ............................. GGGAATGTATGGATTTAGAAGAAGAGCTGGCA 237983 29 100.0 32 ............................. GGGTATTACGGCGACACAGCGCTTGTTGTCTA 237922 29 100.0 32 ............................. TTAACAAATGTTTTTAAAACGCTTATAACAAA 237861 29 100.0 32 ............................. GGGGCGGCAATGGTGGTCAGGGTGATGGCGGC 237800 29 100.0 32 ............................. TTTAAAAATTTATCTCGATAAATCCAACGATG 237739 29 100.0 32 ............................. AATGATCGTATTTTTCGCTACGTCGCACAAAT 237678 29 100.0 32 ............................. CCCGTTATTTGTAGTTAACGGGCACGTAGTGG 237617 29 100.0 32 ............................. ATCGGGCAGCTCAACGCGGCTATGAAAATCAC 237556 29 100.0 32 ............................. TTGATCGCCGTGGCGGTGAGATTAGAAACGCG 237495 29 100.0 32 ............................. CTGCCAAACTTCTGACAATCCCGGACAGCATC 237434 29 100.0 32 ............................. CGAGTCTGGAAATTGAGGACACCGAAACCGGC 237373 29 100.0 32 ............................. TGCTGGTGGGCGGTACGCCGTGCCAGGCGTTC 237312 29 96.6 32 ............................T TATCCTTACCCTCAACGGCGCAGGCCGATCTC 237251 29 100.0 32 ............................. CGATCTGGTGAGCGCATCGGTTCGGGAGAGTG 237190 29 100.0 32 ............................. GATTGTTCAGATTGGGAATTTGACCAACGCCC 237129 29 69.0 11 ................TAAT..CGT.T.C GTGAACCAGTT TT [237108] Deletion [237090] 237087 29 100.0 32 ............................. GGGAATATCGTTAAAGTGGTTTACCACAATAT 237026 29 100.0 32 ............................. GCGCTCAGGGCCGCCTTGCTGCGGGCACTCAT 236965 29 100.0 32 ............................. GACGTGATCAAACAATTTGGCCGCCCGGAACA 236904 29 100.0 32 ............................. CGATCAAGCGAATGCGTCGGCTGGAGCATCGC 236843 29 100.0 32 ............................. GTTTTCGCGGCCGCGAGATTGTTCTTGCCGAC 236782 29 100.0 32 ............................. TACCGTTTTTACTCCCCCGCATTTGGTTACAC 236721 29 100.0 32 ............................. CAGGAGCAAGCACAAACATAGAGCAAATTAAA 236660 29 100.0 32 ............................. CCAGTGCATTCGAACTCATGGAACGGTGCTAA 236599 29 100.0 32 ............................. GCGCACCGCTTTAGAGTGCCAGGCATAGGCAA 236538 29 100.0 32 ............................. ACACAATACGTATCAGTAAAGACACAAATTGT 236477 29 100.0 32 ............................. CGCATTACCGGGAAAACCTGGGAAGAGACGAT 236416 29 100.0 32 ............................. TCTTGTTTGTTTCTGATTCTTTTTCTGAATGA 236355 29 100.0 32 ............................. AGTCAGAAGAGGACTCATTAGTATCACTCTCA 236294 29 100.0 32 ............................. AATAAACAGCGTCGTAAATGGATCGAGGAAAT 236233 29 100.0 32 ............................. CATCTCTCTATATGCAGCGCCAGCCAGCGCAA 236172 29 100.0 32 ............................. CTTTCCTTGCGTCAATTTTGAGGGAGATTGAT 236111 29 100.0 32 ............................. ATCCCGCGCTCTATTAAAATCTTTGATTGCGT 236050 29 100.0 32 ............................. GTAATGTGCGCCGCGCCGGTGATATCTACTTT 235989 29 96.6 32 .....T....................... CCATTGCTGACAGGCAGTGATTTCAATGTGTC 235928 29 100.0 32 ............................. GTCATGAATGGCCTCATAAAAACGATGTTGGT 235867 29 100.0 32 ............................. TGTTCGCGCTAAATAATGCAGTAGGCCGCGCT 235806 29 100.0 32 ............................. CCAGAAATTTAAATGGCTATTCCTGGCTGTAG 235745 29 100.0 32 ............................. GCGCAATTGCAGTTTGACGCGGTGCTGTCATT 235684 29 100.0 32 ............................. TCGTTTGTGGCGTCAGTAATACTATTATCGGT 235623 29 96.6 32 .............T............... TTTTTAAATCCGGACAGACCCTGTAACGGATC 235562 29 100.0 32 ............................. ATCCGACTGTATGCCCAGCAGAACGAGGGCGC 235501 29 96.6 32 .............T............... CACGAGTGGCAAATTGATTTCGACGAAAAACC 235440 28 82.8 0 ...............A.AA.....G-... | ========== ====== ====== ====== ============================= ================================ ================== 51 29 98.7 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGCTGAGCGATGATAAACCGCGCGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTGGAATGTGGTGCTGATAAAAAGTAGTTTATAAACAATGATATACGTTTAGT # Right flank : TTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTATACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGGGCTGGAGCGGATAAATCGTTGAAGGCCAGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAACAGTCGAATCATCTGCCATCCCGATATTGCGCGTGAACGTTATGCGGCAATGACTTTTCTCGGTATTACCCGAAAAATAAAAAAATTGTCGCGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGGC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:-0.02, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,5] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.00,-13.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [8-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.65 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //