Array 1 1635-80 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGD01000018.1 Streptomyces sp. NRRL S-1868 contig18.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 1634 29 100.0 32 ............................. TCGGGGGCGTGCTCTTTCCGGTGGCAGCCGGA 1573 29 100.0 32 ............................. GGCGACAACCGCGTCGTGCGGCTCCAGGCGCT 1512 29 100.0 32 ............................. TCCCCGTGCAACCGGGCTTGCGCAAGCTGACG 1451 29 96.6 32 ............................A TGAGGGCCGAAGCCGAGAGGCAGCTGAACCCG 1390 29 100.0 32 ............................. CGTTCGCGGGGGTGCGGAGGCTGATCGGCTCC 1329 29 100.0 32 ............................. AACGCGAGGCGATGGCGGCCCGGACGCAGGAT 1268 29 100.0 32 ............................. CTCGGTGCTGCCCTGCACCACTTGGACTCCCT 1207 29 100.0 32 ............................. GGGGCCCGCCGCCGGTGCCGCGGCCAGCTCCG 1146 29 100.0 32 ............................. GCTACCGGTTCAACAGGCCGCACGGGCTCACA 1085 29 100.0 32 ............................. GGCGTCTTCCACGGCCCACTGCCCGGCATGTT 1024 29 100.0 32 ............................. GCCCTGTCGGTAGGACTGGAGGATCGTGAACG 963 29 100.0 32 ............................. GAGACCCTGAGCCAGGAGGAGGCCACCCGCCG 902 29 100.0 31 ............................. TCTTGGGGGAGCTTGAGGAGCGCCAGGTACT 842 29 100.0 32 ............................. CACGTGCAGCGGCCGGACCTCTTCGCGGGCGG 781 29 100.0 32 ............................. GCCTAATCCGCGAGGAAGGGGCTGTCCGGTGA 720 29 100.0 32 ............................. CGTCGAAGTCCCGGTCCTGCTGATCAGGTCAG 659 29 100.0 32 ............................. TTCATGGTTTCCCTTCGGCGCTGAGCAGTTCG 598 29 100.0 32 ............................. GCTCTTGCCGTTCGCTCCCTTGCCCCAAAGCA 537 29 96.6 32 .....................A....... CGGTGACAGACCTTCACGTCGTCTGGCCATTA 476 29 96.6 32 .....................A....... TGCGGACTCCTCGCCCCAGCCCAGTCCGAAGT 415 29 96.6 32 .....................A....... TTGCCGGTGTTGAGGTTGGCGACCCCGGTGAT 354 29 100.0 32 ............................. GCGGCCGTGGCGGCCATGTCCCGGCCCTCGTC 293 29 96.6 33 .........................C... GGCTGCGTCCAGCGGGGCGCGTGGAACGTCGGC 231 29 93.1 32 ............G........T....... AACCCGCGCCGCTGACCGGCGGTGAGAGCCAT 170 29 86.2 32 ............CAC......T....... GATGGCGTCCTTCCACGTGAATCCGGCGCCGG 109 29 89.7 0 ...........AC............C... | T [86] ========== ====== ====== ====== ============================= ================================= ================== 26 29 98.2 32 GTGGTCCCCGCGTGTGCGGGGGTGGTCCC # Left flank : CGCGGACGAGCCGATCTGGTGACCGTCATCGTCCTGGCCAACTGCCCCGCCGGACTGCGTGGTTTCCTCACCCGGTGGCTCCTGGAGATCTCTCCCGGCGTCTTCCTCGGCTCCCCGTCCGCCCGCATCCGCGACATCCTCTGGGACGAGGTCCGCACCTACTCCGGCCGAGGCAGGGCGCTCCTCGCCCACAGCACCGACACCGAGCAAGGCTTCACCTTCCGCACCCACGACCACACCTGGCACCCCACCGACCACGAGGGCCTCACCCTCCTCCACCGCCCCGCAGCACCCCAGGAACCCGGCCCGGCACCGACCACTCCGGCAGCGCCGAGCCGACCTCCCCAACAGGGGTGGAGCAAGGCGGCGAAACGACGGAGATCCAGAGGACGGCGATGAAGCAGCTCGGTGGTGTATGCACCGACACCCCTGAAAGGCCGGAACTTGGCAAAGTGAGTAAAATCCCTTCCCCGCTGAGATGAAACCCCTGGTCGGCTCCT # Right flank : CTTCACGTCGCCCGGCCTGATCGTGAAGCACTGGTGGCCCCCGCACGTGCGGGTCGAGCCGGAACTCCCCCCCCCCGGCC # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGTGTGCGGGGGTGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,0] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCGTGCGGGGTTGGTCCC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-12.30,-13.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [28.3-46.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,5.55 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 13378-12436 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGD01000018.1 Streptomyces sp. NRRL S-1868 contig18.1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 13377 29 96.6 32 ...C......................... CCGAGGGTGGCGTCTCCGGGGAGGGGCTCTGG 13316 29 96.6 32 ...C......................... GACCAGTCGAGCGGCACCAACTACGGGAAGAA 13255 29 96.6 32 ...C......................... TGGGCCCAGCGGCAGAGAGCTACGTCGGCGAG 13194 29 96.6 32 ...C......................... CCGTTCACGGCCGTGCGGCGGCCGGTGATCGA 13133 29 100.0 32 ............................. TCCAGCTGGCGGTTGCGGTCGCGCGTCGTCAT 13072 29 100.0 32 ............................. GGGAGGCGAACTGACATGCCCGAGCGCACGCT 13011 29 100.0 32 ............................. ATGTCGTTGGTGGCCTGCTGGCGGCGGTCGCG 12950 29 100.0 32 ............................. GGCGGCAGTGTGATCATCGCGGCTTCCTTGTG 12889 29 100.0 32 ............................. GCGACCCAATTCCCGGTGCTGTTCCGGGAGAT 12828 29 100.0 32 ............................. GTCGTGCTGACCTGCGGCAAGACGCTCCTGGA 12767 29 93.1 32 ...C..........C.............. CCGGCTCGGGCGCGATGCAGGACTGCGAGGTG 12706 29 93.1 31 ...C.....................C... CCGTCTACGCCGGGTGGCAAATCACCGGACG 12646 29 93.1 32 ...C.....................C... CACGACCGCCGCCGCACTCGGACATGCCGCTG 12585 27 89.7 32 .............--.............T CGGCGTCTCGCGGCCGCACGACTGGCTGGTCT 12526 29 93.1 32 ..............C..........C... TTCGGGCATTCCCGCACGGCGGAAATTTTCGA 12465 29 86.2 0 ..............C......G..AA... | G [12461] ========== ====== ====== ====== ============================= ================================ ================== 16 29 95.9 32 GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Left flank : TCACTCTCGGCGAATCTGCGCTGGCAGAGCGTCTTCGTCTACACCGTGCCGCCCGCGGCGAAGCAACAGGCGCTCACCGACGTCACGGCAGCCGTGGACGCGGGCGCCCTGCGCGTGGGCGAGGACGCCGGCCTGCCCTTGCACCGCTTCCCCCTGGAACGCACCACCGACGCCCACACAACACTCGAACAGGGCGTCACAGGAAAGATCCTGCTCGACATCGTCTGACGCCCGACCCTCCCCTGCACACGTCTCCCAAGCGCTACCGTCAACTCCCGCCCGGCCTCTGTCACTTGCCACCGCGCATCCCTGGAGGAAAATGGCCCAGCACCGCCTACGAGCCGGTCCGGCAGCGGTGCAACGAGGCGGCGCACGACGGAAATCGGGAGTGCAATGATGAGCCACGCTGGGCGTGTTCGCCCGACATCACCGAAAAGCCCGAGCTTGGCAAAGTGGGTAAAATCCGTGCACCGCTGAGAAGAAACCCCTGGTCGGCTCCT # Right flank : TATTCTCTTCACGGCGCTGTCAGCGCAATATCGATCTCGACTGACGCGGGAATACCCTTGCACGCCACGTACGCCTGCGGCGTAATTCAGTCTCCCCCCGCGTACGAGGGGCAGGGACACAGCCAGACACTGCGGCGAACATCCTGGCGCAAGAACGGTGAAACCAAGGACGTGTAGAGGTAGATAAACAAAGGACGTGTTTCCAGAACTCACCCTGGAATCAGAGGGTTTCCAAAAACAGCCCCCTCCGGGTCCACGTCCCAGTACGCTCATCTCCCGGCTCATCCCGAGCCACGAGACGCGAGGCCGCAAACATGGCGGAGGCCGGACTCTCTCCCCAGCTCGTCGGGGCAACGACGTGCTGGGAGTCCGGCCTCCCGTCTCCGTGAGTACCGACACCCAAGAGACTCGAAGGAGAGTCTACTAGTGAGTTCGTTATCAGCCCCTCTCCAGCCGGATACGACCCCGCTCTGGACGCTGATCAGCGCCATGATCAGCGC # Questionable array : NO Score: 5.64 # Score Detail : 1:0, 2:3, 3:0, 4:0.80, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.58, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGGTCCCCGCGCATGCGGGGTTGGTCCC # Alternate repeat : GTGCTCCCCGCGCATGCGGGGTTGGTCCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [6,1] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTGGTCCCCGCGCATGCGGGGTTGGTCCC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.30] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [46.7-43.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.74,4.91 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 44151-44486 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGD01000060.1 Streptomyces sp. NRRL S-1868 contig60.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 44151 29 100.0 32 ............................. GAGTATGGCTGGCCCGGGCGTTCACTCGTCGG 44212 29 100.0 32 ............................. GACCGCTTCACCTGTAGCCCCTCCGCCGTCAG 44273 29 93.1 32 G.....T...................... ACGGTCGACCTGACCAACGCGGGCTTCCTGCG 44334 29 96.6 32 G............................ CAGGCGTCCGGGTCGGTGCGGCACGGCTCGCG 44395 29 100.0 32 ............................. GGGACGTTGCCTACGGCCATGTCGAAGGTGCC 44456 29 82.8 0 G....................C...A.AT | CG [44468] ========== ====== ====== ====== ============================= ================================ ================== 6 29 95.4 32 ATGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GATCGCTGAGCACAGCTTCCGCACGGCAGTGATCGGTTCCGTTCTCGCGATGATGGAGGGCGCCGACCCGGGCAGGGTCGCGCTGCTGTGCACCTTCCACGACACGCAGGAGACCCGGGTCGGTGACATTCCGTGGATCGGGCGGCGGTACCTCACGGCGGCGAAGAACGAGGACGTCACCCGTGACCAGGTCGCCGACGCACACCCGAAGGTCGCCGCCGGCATTCAGGCCGTAGTCGACGAGTACGAGAACGGCGACTCGATCGAGGTACTCGTCGCTCACGATGCCGACAAGCTCGAATGCATGATCCAGGGTCTTGAGTACCTGGAGCAGGGCTACCGGAACGCTCGCGAGTGGGTCGACAGCACGCGAGCGAAGCTCAAGACGCCGTCGGCGATTGCCCTTGCTGATGCCGCACAGAACATGTCCTCGGTGGAATGGCAGCGCACCTACCTGCGGTAGGTGACGCGAAGGCGCCGAAAGCTGCTGGTCAAGAAGT # Right flank : TGACGAAAGTGCCCCCGCCCGGCCATGTGTGGCCGGGCGAGGGCATTGTCAGCGTGTGAAGTCGAGTAGTGCCAGGGCGAAGGCGTCGACGCTGGTCGGCGCAGCCAGGGACGGGAGGAGTCAGCGGGCCCGCTCCAGTGTGCGGAGCCGGGACTCGTGATCGGCGAGACCGTCGCCCCGCTCGACCGCATCGAGCCGCGCGTCCTGCCGGTCGAGGCCCTGCTCGGGCTCGGTGAGCCGCTGCCCGGTCCGATCGGTGCGCTGCACCAGCAGCGCCGGGGAACCGGCCGGCGGATGCGCTCCAGCTCGACGGCGACCGCGGACGGGTCGGACGGGGGTGGGGCGGTGCTCACGGGGCGGTCTCGGTCTCCTCGTCGACGAGGCGCCGAGGCCGAACCGGTCGAGCAGCCGCTCGACGGGCGGGAGGGCCATGACGCGGGCGAGTCCGCCCGCCACGGCCAAGCCCCCGGCCACCCACGGCAGGGACTCGGGTACGCCGG # Questionable array : NO Score: 6.03 # Score Detail : 1:0, 2:3, 3:0, 4:0.77, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ATGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-9.70,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 48186-48580 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGD01000060.1 Streptomyces sp. NRRL S-1868 contig60.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 48186 29 100.0 32 ............................. ACCTCACGACCACGCCCGTCACCATCGAGGGC 48247 29 100.0 32 ............................. GTCAGGGTGGCGTAGGCGGTCGTCCCGTCTGC 48308 29 96.6 32 ............................T CGCGTCCGGATGACTGACGCTATCGTCGTCAA 48369 29 96.6 32 .....................G....... TCGGTAGTGATCTCATCGACAGTCTTCGCGCT 48430 29 93.1 32 .....................G......G TTCGGTCAGCGCTCGCTGGACCGTCCCGATCG 48491 29 93.1 32 .....................G......G CGCCCGCCCTCCCAGAACGAGATCGTGGCCCG 48552 29 82.8 0 .............C.......C...A.AT | ========== ====== ====== ====== ============================= ================================ ================== 7 29 94.6 32 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : GCTGTATCAGGGAGGCAGGAGGCTTCACGCCTTGATGTGGGAGGCGGCCCTCCGTGCTCTGATCTGCCCGCCGTCCGTTCTCGTCGCTCAGCTGGATCGTCTTACCGGTCTGATCGGGATGGATACCGTCGAGTTGGGAGTCATCCCGTTCGGCGCCTCGCTGAAGATCCCTGCCGCCAACGGGTTCTGGATATTCGACGAACGGCTTGTGATCGCGGAGGACTGGCATGCCGAGTTGTGGCTCGACGACGCCGACAGCATGGCCACCTACTCGCGCGTCTGGCGCACTCTGCGGGAATCCGCCGTGTACGGCGCCAGCCCACCGCACCCACCGCTCCGCCTGCTCCACCGCTGCCTCCCCTTGGCCGTTGACAGGACCGTAGATAGGACTGGCTGTCGGGCGTCGTGAGTTGTCCACAGGCGGGCAGATAAGTCGTACCGGCAGCGGCGAGGTGATGCTGAATGCGTCGTTCCGCGGGTAGCGTCGCTGGTCAGCCAGT # Right flank : TGACGAAAACGCCACCGCCCGGCCAGGTGCGCCCGGGCAGGGGCATTCAGCCGACTAAGCCGAGTAGTGCCAAGGCGAAGGCGCTCCCAGCGAGGGCACGAGGCAGGGCGCGGTATGCGGATGCTCGCCGCGCCGGGGGGGGAGGGGAGACGGCGCCGACCCGCACCCACAAGGCCGTCTCCCGCCGCCCCCCTCGGCTGAGCGGAGCGCCGGGCAGGGGCGCGTCCCGCCTGAGCGGCATGCCCGGCAAGAGCCCCCTCCCAGGCACACCCAGCAAGAGCCTCATCCCAGGCAGGCGGCATAACCGGCAGGAGCCTCACCCCAGGTGGGCGGCATGCCCCGCAGGGGGTGCGTTGGTGGTGGTTCGCGGCGCCTTTTACGGTCGGAGTGTGGCGTGTCGGCGGCCCGTGCGCGGAGCGTCGGCGCGTGGTTCCGGACCGCGCCCGGCGGGGCCGTGCGGTGGCCCGGAGCCGGTCCGTACCCCCGAGGAACGCCCGGAG # Questionable array : NO Score: 5.55 # Score Detail : 1:0, 2:3, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.56, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : GTGCTCCCCGCACGCGCGGGGGTGGTCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-30.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 55378-56434 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGD01000069.1 Streptomyces sp. NRRL S-1868 contig69.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 55378 28 100.0 33 ............................ GTGGGTGCCCACCAGCGCCGAGTACATGCGCGA 55439 28 100.0 33 ............................ GCACCGCCCCCGGGGAACCCTGGGCGCCCGCGC 55500 28 100.0 33 ............................ CCCCACCGCAAGCGCTATGAGGGTGGCGCGGCC 55561 28 100.0 33 ............................ GGTGTCGTGGATCAGGGCCGGACCGTCGTTCCC 55622 28 100.0 33 ............................ CGCGCGGAGCGCGGCATTGTGCTGGACCGGCCG 55683 28 100.0 33 ............................ GCCGGGGGAGGGGGGTTCGTGATCTAGGTCCGG 55744 28 100.0 33 ............................ GTGCCAGAGGTGTAGCGCCATCGCGGGATGCTG 55805 28 100.0 33 ............................ GGGAGTGTCCGAGGGGGTCAAGTCCCCCACGGG 55866 28 100.0 33 ............................ CAGGTAGGACCAGGAGTCGCGGGCGGCGGCGCG 55927 28 100.0 33 ............................ CTCGTCCTTGCGGCAGATCCGGGCGAGGCGAGC 55988 28 100.0 33 ............................ CCGCCCCGCCCACTCGGCACACCGCCGACACCA 56049 28 96.4 33 ...C........................ CGCACTCGTTTCCGCCGCCGCCGCTGTAGGTGC 56110 28 96.4 33 ...C........................ GCGGAGGCCGCCCGGATCGTGGAGTCCGCCCGC 56171 28 96.4 33 ...C........................ CTCGGCAGGCAGCAGACCCCTGTCGATCGCCGC 56232 28 96.4 33 ...C........................ CCCGCCCGCCCACGCCGCCCGTTCGGAGTGGCT 56293 28 96.4 25 ...C........................ GGGCAGGTGCCGGTCGAGACCGTCG Deletion [56350] 56346 28 89.3 33 TCC......................... GAGGGGCCGTGCGGCGTCGCGGTCCGGAGCGGT 56407 28 89.3 0 ...C.........A...........C.. | ========== ====== ====== ====== ============================ ================================= ================== 18 28 97.8 33 GTGTTCCCCGCACGCGCGGGGATGGTCC # Left flank : GTCGGTGGCGCCCCCGGCAGGACTCGAACCTGCGGCCAAGGGTCACCGGCCTGTGCAGGACAGTGGGAACGCGGAAGTCTCGCCTTCCAAGGCCATCCGGACTGGCATGCCGAGTTGTGGCTCGACGACGCTGACAGCATCGCCATCTACTCGCGTGTATGGCGCCGACGCGCACAACGTGATCAATGCGGCATGGCGGGAGCTGAACGCCCGCTGAAGGGTCTTCGGCTGGCGGGACGGCGGCGCGCTGCCCGAAGGCAGGAGCCCTCAACAGCCCGACCACGCCCACCACCACCCGCACGAATGCCACCAGCACGGCCCACCGCCCCCACCGCTCTGCCTGCTCCACTGCTGCCTCTCCTTGGTCGTTGGCAGGACCGTAGGCAGGACTGGCTGTCGGGCGTCGTGAGTTGTCCACAGGCGGGCAGGTAAGTCGTACCGGCAGCGGCGAGGTGATGCTGAATGCTGCATTCCGCGAGTAGCGTCGCAGGTCAGCAAGT # Right flank : CCTCCGTCCGCCGGGCCCCGGTGACAGCCGGACAGCGCCCGGCCGTCCTTCGGTCGCCGAGGGAGGGCGCCGGCGCTTTTCCATGCCCGCAAACCGGCCTCCGACCAGCAAAAAGCCCTCCCGGAGGAGGGCGGTCGGTGGCGCCCCCGGCAGGACTCGAACCTGCGGCCAAGGACCACGGCGGGGTCAAGGATAGGGGGACGGGTGGCTCGTCCTGTTCGCTTCACGTCCGCGACGCCTTGTGGAGGTTCAGTGAAGCGGTCCCGATAATCGCAGGCGGGTGCGATTTCTGCAGCGCTTTTGGCGCTGTGAGTGGCGGGTGTTGCGCAGTCGTTATGGGTGCGGTCCGCATGGAGAAGGGCCAATCGGGGCGAACAGGGCGAACGACGCCAACGCGCGTCGAAAGCATCCATTTTTCCCGGGATCTACCGTGAATACGCTTCAAAACCGGAGCAAAATTGGGCATTCTGCACCTGTGGCGATCTTGGACGTACGGCCTG # Questionable array : NO Score: 6.13 # Score Detail : 1:0, 2:3, 3:0, 4:0.89, 5:0, 6:0.25, 7:-0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCACGCGCGGGGATGGTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,3] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGGTCCCCGCACACGCGGGGATGGTCC with 96% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.70,-0.40] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-20.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 119087-119484 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGD01000008.1 Streptomyces sp. NRRL S-1868 contig8.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= =================================== ================== 119087 29 100.0 32 ............................. GGCCCTGTGACCGTGCGCTCGCTGCCGCCCTC 119148 29 100.0 32 ............................. CGCGTATGCGGCGCTACGACACACCGCCGCTG 119209 29 100.0 32 ............................. GCCACGATCACCAAGCCCGTCGCGGGGATGGT 119270 29 100.0 32 ............................. CGGTGCCGCCCTCGCCCGGTTTGTTCAGCACC 119331 29 100.0 32 ............................. CCGACCGGTTTCCCTGAAGGGCAGCAAACACT 119392 29 100.0 35 ............................. TGGCCCTCGGCCTTTTTGGCGAAGCGGAGACCGTG 119456 29 89.7 0 .............A........C..C... | ========== ====== ====== ====== ============================= =================================== ================== 7 29 98.5 33 GTGCTCCCCGCACGCGCGGGGATGGTCCC # Left flank : TGACCTGGCGATGCGCCCTCGCTCGGCCACGCGGCCGACGCGGCGCCACGGGGACGCTGCCCGGGACCTGTTGGAGGCGGAGAGGCGCGCGCCGGAGGAGGCGGCCCGCCCTTCCGTGGTGCGACTGGTCGGCCGGTTGCTGGAGCTGGTGCCGTCACCGGGGCCGGAGTTGCGCGGCCTCGCACAACGCTGTGGACTCCCCGCATGACGCGGCCCGCCCTCTACCTGATCGTCTGCGCGGCAGGCCCGGCCCAGGACCTCGACGACGGCGTCCGCGCCGCGCAAGCCGCGGGGTGGGACACCTGCCTCGTCCTCTCGCCGACCGCCGCGACCTGGTGGGGCCCACTGGTACAGGGGCGAGCACCCGACTCATGTCCCCGCCGGGTCCGTTTCCTGGCATGCTGATGCCGTGCTGAGGGGAGGGTGCGTCCGGAATATCGGAGTCGCAGGAAGTGATGGAAATCCGCACTCCGGCCCCAGAAAGCCCCAGGTCAGCAAGT # Right flank : CCCCGACCGCCGGGGCTGGAGCAAGACCTGCCGCGCTCGCCGGGCGCGTGGGTCCCCCTGGGAGCGCAGGTGAAGGCTCCCAGGGAAGGGCTCCCGCCCCCGACTCCCTTGCCCCGCACGGCACTTGAAACGCTCTCACTTGAGCGGCAGCGGACTCTGCTGATAGGTGTGGAGGGGGTCGCGGAGGGCGCCAGGGTCCTTTGGGGTAACTGTTTTCGTGAATTTCTTCACATGAGAAAGTGCCCGCTGGAGGGGTTCTCCGCCCCGGAATCCAAGGTTCCAGGGGGAGTTCGGGGGGTCGATTGCCCCGTCGGGTGGAGCGGCGCGAGGGAGAGGTGCGGTCGGCTCCGCAGTGGTTCAGTCGGGGGGTCCGGGATCCCTGCTGCTCAAGGGGTGCGTCAACGGCTCGTGGGGCCGAGTGGTTCCCCCGGCGCGCTGTGGGGTCGATCACGGGGCGGCGGAGTGTAGCAGAGGGTGGGGGCATCCTTGTGAAGGCCCTC # Questionable array : NO Score: 6.19 # Score Detail : 1:0, 2:3, 3:0, 4:0.93, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGCTCCCCGCACGCGCGGGGATGGTCCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGCTCCCCGCCCGCGCGGGGATGGTCCC with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [40.0-18.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 1 19615-20377 **** Predicted by CRISPRDetect 2.4 *** >NZ_JOGD01000099.1 Streptomyces sp. NRRL S-1868 contig99.1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ================================ ================== 19615 30 96.7 32 .............................T AACCCGATCGTGCACAAAAGGCAGCTCGGCGA 19677 30 96.7 31 ............T................. CCGGGATGCTGACCATGGTGGAGGCCCTGCG 19738 30 93.3 31 ............T................T TCCCCCAGGACGGGGCCGTGTCGGTGGACTG 19799 30 96.7 31 ............T................. CGCGCGGACGCCTCTGCCTACAGCCATCTGG 19860 30 100.0 31 .............................. GTCCGGATCACCATCGAAGCCGCCGACCCCG 19921 30 100.0 31 .............................. CGCCCGCACCGTCGCAACACCTCGCCAACCG 19982 30 100.0 31 .............................. GGGCCCGCAACTCCCGCTCGTACAGCGGGCG 20043 30 96.7 30 ............................A. TGGGGGCCGCCGTGTCCGTTGTCGGAGTCC 20103 30 96.7 31 .............................G GGGAAACGCGGGCCCCGGCGAATGGGTCGGA 20164 30 96.7 31 ............T................. GCCTGACCGCCAGCGGGACTGGCCCCACGCT 20225 30 90.0 31 .............AC.A............. AGGCCCGCGTCGAGGCGACCGGGTCGCGTGA 20286 30 90.0 31 .............AC..............T CACCCTCATCGACCCGGACTACGCCCCCCGC G [20303] 20348 30 83.3 0 ...........A.AC..........G...A | ========== ====== ====== ====== ============================== ================================ ================== 13 30 95.1 31 CTGCTCCCCGCGCGTGCGGGGATGGACCCC # Left flank : CCGCTGCACCACCTGCGCCCACCTCTACTGGCCCGGCGCCCACCACCCCCACCTCACCACCACCATCGCCTCGGCCCACCAGACCCTGACCCACCGGGCCCTGACCCACCAGACCAACTCGCCCTGAAGCCCGGCTCCGTGGGCAGCCCCCACAGGCTGTCGCCTGCGCCCTGCCGTACGCCGTTGCCGGTTCTTGAGCGGGGCGGCCGTGAGTGCAGGGGGCACCGCAGAACAGCCTGTTGTTCCCTGCGTGCACGGGTATGCCTCGGCCGGACCCGACGTGGTGCGGGTTGGGGCCGCCGCTGGGCGGGCGAACATGCGTTGGTGCCTTGTGGGAGGCTGAATACGCCCGGAGGGGCGGGCGGTAACTGCGCCGAGCCTGCTCACACGGACTGTGTCGATGGTTGTTGCCTTTCATGTCCGAGTTGGAGGAAATGCCCGAACTCTCGAAAGCTGCTCAGAACGGCCGTCGCGCCGGGTAAAACCGCAGGTCGCCGAGC # Right flank : AGGTCGGCAGAGGGGACTCGGGTGTGCTCGTGAACTGCTCTCTGCGCGTGCAGCTTCGGGCTCTCCTCGCTCGGGAGGGGGCGACGTATTCTCAGCTGCGCTCCTCGCGATGCCGACCCACGTGACGGCCCCGTCCCGGTCAAGTCGGTTGCGGATCAGGACGTTCAACGCACGAGGCGTTCAGTGTGGGCCCGGGAACTGGAGGTTGTGGGCGGTCCTCTCCCGCGGAGAACACGGCAGCGCGGCGTCCGGGGCGGCGATGTCGTACTTGAGCCATTGCGGGGCGAACCAGAGCGCGGCGTACTCGCGTGCGTGGGTGATACAGGCTTCCAGTACCTTGCCGGGCCCGGAGTTGCCCTGCGGGTAGGCGACGGCCATCGCGTCACCCACGCGACACGTCGAGCGAAGCACATCGAACACGAGAGTGCGCCACCGTGGCCGTGGGTGTTCTCGTTCACCGAAGCCAAGGTCGCGGCGACCCGGGTGGTCGTGCGGCGCAC # Questionable array : NO Score: 5.38 # Score Detail : 1:0, 2:3, 3:0, 4:0.75, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.37, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGCTCCCCGCGCGTGCGGGGATGGACCCC # Alternate repeat : CTGCTCCCCGCGTGTGCGGGGATGGACCC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [2,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGCTCCCCGCGCGTGCGGGGATGGACCCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-12.70,-12.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-12] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [35.0-33.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //