Array 1 744168-745636 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWI01000001.1 Vibrio cholerae strain VcCHNf9 Scaffold1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 744168 28 100.0 32 ............................ TGTGAGTGTTTCTGCTCTCGATAGCACCCCTT 744228 28 100.0 32 ............................ ACTCGGCGATCGCCGTCTCGCTAATCCTTGTG 744288 28 100.0 32 ............................ TACCCCGAATGGGTTCTTGAAGTAGAGTCGCG 744348 28 100.0 32 ............................ AGTCTCCTGTAATTTGCGTGAAACTTCCGCTT 744408 28 100.0 32 ............................ TTTTCTCTACATTCTGCCTATTTTCGATGGTA 744468 28 100.0 32 ............................ ATAAGGGAACAATTTACGTACTCATCCCCCCA 744528 28 100.0 32 ............................ TAGCAGAATTGCGCCAGAACCCCCGAACACGT 744588 28 100.0 32 ............................ TGTATCTTACATCACTCGTGGTGAGCAAGAAG 744648 28 100.0 32 ............................ TATTGACTATTGCATATACCGAAGATTTAGGC 744708 28 100.0 32 ............................ TCATTGCCGCGCTGGCGTTGTATCTTTCCATT 744768 28 100.0 32 ............................ TTTAATGTGATTGCTCATCACTCTTCCTCATC 744828 28 100.0 32 ............................ AGTACGGATACTCAGGGACGTTTGAAGAGTTT 744888 28 100.0 32 ............................ TCGAAGTAGATTTTCCGCGCCGCCTTTTCTAT 744948 28 100.0 32 ............................ CACAACAATCATTTCTGCTGCTTCAAGATCAT 745008 28 100.0 32 ............................ GTCTTTACGCAGCTTTCGCATAAAACGGTTTA 745068 28 100.0 32 ............................ TTGAACGTTTTTGGGGTAGCCACGTTTCAGAT 745128 28 100.0 32 ............................ TTAGTCCATCAACCGCATTCTTAACTTTGGCC 745188 28 100.0 32 ............................ ATAAAAGCTGAGCAAGCAGGCAGTGCGCGCAC 745248 28 100.0 33 ............................ TCCCACTCAAAATCTTGTTCAGAATTCCATTTC 745309 28 100.0 32 ............................ TTTATCAAGCGCATTCTGTAAATACGCTTTGT 745369 28 100.0 32 ............................ GTCACGGAGCTGGAACAATGAGCGAATGGGAT 745429 28 100.0 32 ............................ GTCACGGAGCTGGAACAATGAGCGAATGGGAT 745489 28 100.0 32 ............................ TTCAAACCTCAGCTGCCGACATATTGCGCTGC 745549 28 100.0 32 ............................ TTCACGGGCTTGTTTATCGACCATCGAAATAT 745609 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 25 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : GAGCGCATTGCATGATTTGCAGGGGTTAAATTGGTTAGGACCTTTGGCAGGATATTGCAAGATTACTACGGTTACTCATGTGCCAGACCAAGTGGAATATCGCATCATTTCAGTTAAACGCAGCAATTTAAGCAAAGCAAAATTAGCGCGTTTAATTGCTAGAGGTAGCATAGATAAAGATGGTGAGAAACGTTACAAAGTAAAAATGCTTCGCCAAGGGTTTGATAATCCATACCTTGATCTGTCTAGCAGTTCAACAGGGCAGGTGTACCGAAAATTCTTTGAGTTTAGTGATATTCAAGCTGAGCCAGTTGATGGTGAGTTTGATAGTTATGGTCTAAGCAAAACAGCAACTGTACCTTGGTTTTAACCCTTTATTTTTGCTCTTTAAAAATGTGCTTTTAAAACAAATGGTTGCAACGGGTTGTTTTTAACAAGGTAAAAAGATGATTTTTATCCTAACAGCCTGTTGCAGCTTATTTTTATCGGTTTATTCTATT # Right flank : AAGAAATAAATATCCGACGGAAAAACAAAATCTCGATGGCCGCTTATCGGTTTCATTACTTCCAATAGCGCCAGCATCTGCTCAGTGAGAGGGATGCGGTGTTCTCTTCTTTTTTTCATTCTCTCTGTGGGAATAGCCCCAACTTTCTCATCCCAATCAATGTCGTCCAACGCGCACTAGATGGCCTAGGCATACTGGTGTGTTACCACTTATTTAGGCTTTCAGTAAGTGCAAATATCCAGCACCAGCCACACTGTAACTTCCATAACTAGATTTTTCGATATGCTCACTCCACCAGCTCATAAGCTTTCGACGAGAGTCTAAATAGTCGGTACGGTTGTATGCTTTGCGTATTTGGTTTTTGTCAGTATGAGCCAATGCGGCTTCAATGACATCAGGTTCAAAGCCCTGTTCATTAAGAGTGGTACTTGCCAAAGCACGAAGGCCGTGCGCGGTCGTTCTATCCTTAAATCCCATTCTGCTAAGTGCTTTATTAGCGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,5] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [71.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.24,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 16417-14467 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWI01000019.1 Vibrio cholerae strain VcCHNf9 Scaffold19, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 16416 28 100.0 32 ............................ TCAAGCACTTCAAAGCCGTGAACTTGGTGAAT 16356 28 100.0 32 ............................ GCATTAAGCGAACGGATAGATGTTGCTTTTAG 16296 28 100.0 32 ............................ TTGATGCAGCATAGTTTGCAGCCGCTTGAAAT 16236 28 100.0 32 ............................ CTCCAAAGAGAGCGTTCTACTCCTTGATGCAG 16176 28 100.0 32 ............................ TGCCATTGTGTCTATATGGCTCAGCATGTTGC 16116 28 100.0 32 ............................ ACGTGCATATTGCCTAAACTGCCCAGCTCTAT 16056 28 100.0 32 ............................ TCCTTTGCCTTTAACACCGGATGCCAGCGCTA 15996 28 100.0 32 ............................ TTTCATGATTTGGCTTAGCGTGGCAGGAGATA 15936 28 100.0 32 ............................ TCACCATCTGCAGGTTTTGCTAACTTACTTTC 15876 28 100.0 32 ............................ TGCGATTGATTTGTTGAAGGTTACACGTTCAA 15816 28 100.0 32 ............................ GATACAGGTCTGTAAATCGTCTTCTACATGAC 15756 28 100.0 32 ............................ ATTTCAGGCATTTCGCGACGAGCATTAGACGT 15696 28 100.0 32 ............................ AGTATTAGACTGCCATCAGGAAAGTGAAACTT 15636 28 100.0 32 ............................ TTCAATTTTCGCCTTCAGCTCTTTGCGCTGCT 15576 28 100.0 32 ............................ ACAAGCAGAACGGTTTCTTTGGTGCGCAAAAA 15516 28 100.0 32 ............................ CGGTTTTCAGTTCGCAGCAACATTCAGCATTC 15456 28 100.0 32 ............................ ACCACACGTCGGCGCGTTCAAATGATTTAATC 15396 28 100.0 32 ............................ AGTACGCGCCGCTTTACCTGTGACACGCAAAA 15336 28 100.0 32 ............................ ATGTAAAGCTGGTTGATTGATTCACATCGAGA 15276 28 100.0 32 ............................ TGAACGCCTAGGCCGCGCTCATTAATTCCCGA 15216 28 100.0 32 ............................ TAGCTCTGATAGCAGTTTGTCGGCTCGAATTA 15156 28 100.0 32 ............................ TATCACAAGAAAATTCAAGCCCACAAACAAAA 15096 28 100.0 33 ............................ TTTGAAGAGGCGACAACGATCACCTTGCAGCTT 15035 28 100.0 32 ............................ TTTAACCATGTCGGTGTTAAAAATCATTGGAA 14975 28 100.0 32 ............................ TTACGGCAATGGCCGTGTTAATAAAATCGTGT 14915 28 100.0 32 ............................ GTGATTTTCTCACCGGATACGGTCACAGATAA 14855 28 100.0 32 ............................ AGACTGGCGCTTGGCTTTATTGTCCGTTTCAA 14795 28 100.0 32 ............................ ACTTGCATCAGTTCTGACAGCAGAATGAGTAC 14735 28 100.0 32 ............................ TCCGACTGCACCGCAACCAGGTCAGACGGCGC 14675 28 100.0 32 ............................ GCTATCCGTTTTCGATTCTCAATCATTCGATC 14615 28 100.0 32 ............................ TGACCGAAGATCACAACGGGGTAAACGTCTGC 14555 28 100.0 32 ............................ TTTAATGGCTTGGGTTGGAACGGTCTCTTCTT 14495 28 92.9 0 ......................G.A... | T [14475] ========== ====== ====== ====== ============================ ================================= ================== 33 28 99.8 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AAGCTTATTGAATGATCTACAAGGTTTATGCTGGTTAGGACCTCTCGTCGGTTATTGCCAAATCAGTGAAGTGTTAAGCGTTCCTGAGCAAGTTCAATACCGGGTGATCTCAGCTAAGCGGCGCAATTTAAGCAGTGCAAAGCTGCGGCGCTTAATTGCACGAGGGAGTATCAATAAAGAAGGTGAGCAGCGCTATAAAAAGAAGATGCTGAGCCAGAGTATTAAAGCTCCTTATCTTGACTTACAGAGTGGCTCTACAGGGCAAAAGTATCGTAAATTCTTTGAGTTTGGTGAAATTCAGGACGTGCCTGTACTTGGAAATTTTGATACCTATGGACTAAGTCTTAAGGCAACAGTACCTTGGTTTTAACCCTATTTTTTCGCTCTTTAAAAATATGCCTAAAATACAATGAGTTACAATAGGTGTTTTTTAACAAGGTAAAAATACAATTTTTACCTTAACTGACTGTTGTAACTTACTTTTATAGATTTATTCTATA # Right flank : TCTTTATATATATTATGGTTGGGGTTATTTAAATGACAGTTTGCGTTGAGATTTCCCGCTTACTGGCTGTATATCCAAAAATGTGTTAGCGTTTCCCACACTAACACCAGTCTATTAATTAAGCCGCTGCCCTTCGGGGTGGCGGTTTTTTTATGCCTGAAATTTGGAGCCGCACATGCAAGACAAGAAGTTATTGGGCGATGAACTCTCACCAAAATCGACCATTAATGCCTCTACGGATATGAGTCAGTCTGCCTTTTTACCGAAAGGCTTTCAGTTTGAAGCCCCTAAAGCGCCGCAACGTAACTACGATGTGACGTTAGGGGATACCGCTAAAGCCGTCGGTAGTGGCGCTCTGCGCTCACTGGCTGGCCTTGGTGAACTTTCGGAGAACTTCCTTGGTGTGGGTGAGAGCTTTCGAGATTTGATGTCGTCTGGCTCGGATTCTCTGCAAGAGAGTATGACTCAAGATGGCCGTGACGCCCTGAACTCCCGTATCT # Questionable array : NO Score: 6.25 # Score Detail : 1:0, 2:3, 3:0, 4:0.99, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [66.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 4503-3635 **** Predicted by CRISPRDetect 2.4 *** >NZ_QXWI01000028.1 Vibrio cholerae strain VcCHNf9 Scaffold28, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4502 28 100.0 32 ............................ ACCACTTACCGCCGTTCATTGTTTTAACGCGC 4442 28 100.0 32 ............................ AACTGGCCGTAGCTGGATCACCTTTGAAGGCT 4382 28 100.0 32 ............................ ATCTTCTTCGGCCTCATCAATGCTGATTGAAG 4322 28 100.0 32 ............................ TCTAAAGAAGTGAGATCGGCAGCATTAAACCT 4262 28 100.0 32 ............................ TTTTTGTAAAAACTCGATTCAACGCTTGAAGA 4202 28 100.0 32 ............................ TCTTCGGTGTTGTCTTCAATTGCAGCGATCAG 4142 28 100.0 32 ............................ TACCGCCCGACCTCAAGGCCTTCACTATCTGT 4082 28 100.0 32 ............................ GCTATACAGTGACATTGAGGTGTGGTCGCCAG 4022 28 100.0 32 ............................ TAACGTTATGTTACCTAGGAAAATCTCGTTTC 3962 28 100.0 32 ............................ GAACCGGAAGACTCGACGGAGAAGGCGACAAG 3902 28 100.0 32 ............................ ATTGTCAAACTCAAGAAAGACTTCTTGAGGCT 3842 28 100.0 32 ............................ TTGAATGCGTCTTGAATCCCTTGTGGGTTCAG 3782 28 100.0 32 ............................ TTTTCCCGCATAGTTCTGCTGAGACGAGCAAC 3722 28 100.0 32 ............................ TAAAATCTTATCTGTGATTTCTTCTGCTGTTT 3662 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================ ================== 15 28 100.0 32 GTTCACTGCCGCACAGGCAGCTTAGAAA # Left flank : AACCTTTTCGAGAACACGTTATAGATCCAATAGAACAAGAAAAACAAGGAATAGCATACATTCCTGATGCTGACATTGAGCGTAAGCTAACTCCATTAGCACAACTTTCCCCATTATATAATCCGATCATACATCACTTGCAGGAAAAATACGGCCCTAGCTTTCTTATTCCAGTGGACTTCGACTCACCTGAATTATCAATTCGAACCGAGTGTGACGAAGATGAATAAGCCTAACAAACGCTTCAAGAGGGACAGCCAACGCATGGCATTTTTACTATGCATTGGTTTTTGTGGTTACGGTGTTATGCAGTAAGTTTGTAGTGGCGTTGTCTGCCCCTTAAGCGGGCGTTAACTGGCAATGAAATTACCCATCTTTTTTCGTTGAGTTTTAAGTTATTGATTTATATTGATAATAAATCCAGTAAAAAACAAAAGGTTATTTTGGGGAATTTGATGTAATTACTATTATTAACAATAGGTTACTGCTAAAGTTTCATA # Right flank : TATTTATAACTTTGGCATTTGGGATCGGCCAGTTAACAAACGCCTCAAAGGGACTGTCAACGCGTAGCGTTTCCAGTCCCAATGAACCGCGGTGGTTATGGTTGTTGTATTTAAGTTTAGTGTTAATGCGTTGCCAGCCCCTTAGGCGGGCGTTATATTTAATTGGAGTATGTAATGAAACCGACATTTTGGAAATTGTCACAAGGGACTGAATTTTTCACTTATGAAGATATGCTTCAGTCAATTGAAGATCGCTTAGTATATGTTCACAAGGATACAGCAGCTCAAGGACAGTCATCTGTAACTCAAGGGCAGACATTTGTTGAAGCTAAAATTGGTGATTACTTCTATTTAACACATGGTAATAACGGAGTGTATGTATTAGGACAATTTACAGGTCCGATAAATTACTTCTCGAATTGGGGAGATGGATGGTCCGATCGACCATTTCGCGTAATTGCTCGCTCAAAAACGCAGGAATGTTACACAGGAATTCAAAA # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGCACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGCACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [58.3-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //