Array 1 9246-10311 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEEZ01000036.1 Corynebacterium yudongzhengii strain 2189 Scaffold36, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 9246 29 100.0 32 ............................. GACGAACCGCGGCGCAATCAACACACGGACCG 9307 29 100.0 32 ............................. GAATAGGAGAAAAAATGACTTCACCTACACGC 9368 29 100.0 32 ............................. ATAGCGGCGGGTTGCTTTGTGCTCGGCGGTGA 9429 29 100.0 32 ............................. TATGGCATTTCCTACTACGAGGGGGGCGGAAC 9490 29 100.0 32 ............................. TTTGAGGCAGGCCCTGTGGATGACCTGCGTGT 9551 29 100.0 32 ............................. GACACCCGCGCCATAGTGCCGCCTTTGCCTTC 9612 29 100.0 32 ............................. AGCTCCAGCACCCCGCCCGTGGGAGACACAAA 9673 29 96.6 32 .....T....................... GTCGATTAGTGATTCGTTTAATGCGGCGGCGG 9734 29 100.0 32 ............................. ATCACGCCCCGGGGTGTAGCCCGGCATGACAC 9795 29 100.0 32 ............................. AACGTGTCATTCACTGAGGAAGACCGCGAGAT 9856 29 100.0 32 ............................. GTAGGGGGCGGTAACGGGAACACCCGTAGCGA 9917 29 100.0 32 ............................. CGCGGGGGCGGACAGCTCAGCAAGGGCGCGAT 9978 29 100.0 32 ............................. ATACAAACGAGGTGTAAAACGCTCTAAAGGGC 10039 29 100.0 32 ............................. CAGGGTGTCGTTGAGTGCTTCTCGGAAAGTTT 10100 29 100.0 32 ............................. AGACCTCTCCTCCAAGGTGATGTCAGTGGTAC 10161 29 100.0 32 ............................. CCTGCGGAGGTTACAGAGGGTTTACAATCTCC 10222 29 100.0 32 ............................. TGGATCTTGATGATGTGGTGGAGCTGGTGCGC 10283 29 86.2 0 .......................CAAG.. | ========== ====== ====== ====== ============================= ================================ ================== 18 29 99.0 32 CTCTTCTCCGCGCACGCGGAGGTATTTCC # Left flank : CCCTTCGTGACGAAATATATCGGCGAGACATTCTCAAGGGAATGCTGGCTACGCTGATGGAGATCCTGGAGCCTCATCTGCCCGAGCGAGACGACGACCGGCTCATTGCTGGGCGCGGCGACGAGGTCGATGGGCACACCCAGTACGGCAAGAAATAGGAGTGCATCATGTTTCTCGTGATTACGGCGACGAGGATTCCGGATCATCTCCACGGGTATGTGAGCCGTTTCCTCACTGAGGTGGACACGGGGGTGTTCGTGGGGAACGTGTCGCGGCGTGTGCGTGACAATCTGTGGAAGCGATGTACTCAGGCAATGCAGGACGGCCGGCTGACAATGATCAACAACGACCCCACCCGGGAACAGGGCTTCGCAGTCAACACGTTGGGCCCAAACCGGCGCAAAATTGTGGACTTCGATGGGCTGCTCTTGCCGGTGAGCTTATCGGCCGTAAAACATGAAAACGATCGTATCGTCGATTAAACTCGCTGGTGCCGCACT # Right flank : CCTGGTAGTGGTGTAACTGGTTTTTGATCCTTCGTTGGTGCTCAGGCGGGTAGTTGCATCAGTGGGTCGGTGTTTACCTCCGTCTGCGAGCTGGTGTCGGTGGTCAGGGCGAGTCGGCATCGGCTCAGGACTTCGAGGCCGAGGCAGCGACGTCCTTCGGCCCATTCGTCGGTCTGCTCGGCCAGGACGGCGCCGATGAGGC # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTCTTCTCCGCGCACGCGGAGGTATTTCC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.90,-10.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-48.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 127159-127411 **** Predicted by CRISPRDetect 2.4 *** >NZ_QEEZ01000005.1 Corynebacterium yudongzhengii strain 2189 Scaffold5, whole genome shotgun sequence Array_Orientation: Unconfirmed Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================== ============================================= ================== 127159 31 100.0 42 ............................... GGTGGGTGGGTAGGTGGTTGGGCCTACCTCGTGGGGCCCCTC 127232 31 100.0 45 ............................... GGTTGGCTCAGGTCGCGGTCTCCGCGTCTTTCCCGCCCGCCCCTC 127308 31 100.0 42 ............................... CCGAGATGATCGCCACCACGATCACCAACTGGGCCGACCCTC 127381 31 100.0 0 ............................... | ========== ====== ====== ====== =============================== ============================================= ================== 4 31 100.0 43 AATGAAAGGCCAGCCTCGAAAGGCTGGCGAT # Left flank : GGCGCAGCGAGCCGCGCCGGATCGTCGGCACCGTCAACACCGCGGAGTTTTTGGTCTCGCTGGCGGCGACGATCGGCTTCGTCATCGGACTCTGGGAAGACCTGGTCGCGAACTTGGCGGCGGTGCTGGCCCTGCTGGCCGGCGGCGTGATCGCCGCCCCGATCGCGGCGTGGCTGGTCACGCGGCTGAACCCGATCGCTTTGGGATCTGTCGTCGGCACCTTCTTGGTCGTGACCAACGCCCCGACCGTCCTGGAAGCACTCGGTGCTTCCGAGCCGATGCTGTGGTTCGTGCGCATCGCCGCAGTCGTGTTCGGCCTGACCCTGGCGTGGGTCGGCGTGCGCCGCGGGCGCCGCAACAAGCGCAAGCTCGAAGCCGAAAAGGCCGAGGCGGCGGAGAAGGCCACGAGCGGGGCGTAGGTTGTGGGGTTTGGGGACCGTTTAGGTTGCCTTGGAGCTCGGTTAGCTTGTGGGGCGTGTGGGTGGATCAAAAGCGGATCT # Right flank : TCAGTGTGGGGTTCATGGACGGGGTGCAGCTGGTCGAAACCCTCAATGAAAGCTAGCGCGTTATCTGTGGCCCCGGTCTGATTTGTGTGGGGCGGAGTGTGTGAGGGGCTTCAACTTACCGTCGCCGAAAGCCCCTTTTGGGTCTCAAAACCTCATGGATCGTCGGTAGTTGCTTAAATCCCCTCAACAAACCGCCAGACAACCCAGCATTCCCCGCTCGGTATCAGTACCCACCCGATTTATCATGAATGTGATCTGAACAACATAATCGGGCTTAGTGCGGACTAATCTCGTGGCTCAATATGTCCCTATTTTCACACTCAAGGAGCCCACGATGAGTGACAACACAAGTGACAATAAAGCCCTTCTCGTTTCTGGTTTGCGCACCCCGGTCGGCCGCTATGGCGGCGTGCTGTCCAGCGTGCGCCCAGACGACCTGGCGGCCGCGACGATCAAGGCGGTCATCGACGAAACGGGTATTGATCCCGCAGTCGTCGACG # Questionable array : NO Score: 2.86 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AATGAAAGGCCAGCCTCGAAAGGCTGGCGAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [10,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-8.30,-9.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [45.0-41.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: NA [0.37,0.37 Confidence: NA] # Array family : NA //