Array 1 35140-34862 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLG01000005.1 Campylobacter sp. P160 ERR473917.12448_4_65.5, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================================== ====================== ================== 35139 53 92.5 22 .......C..................C..............A......A.... TATAGCATTCATAAAACATCGC 35064 53 96.2 22 ...................................T...C............. CATAGCAATCAGCAAACATATC 34989 53 98.1 22 ...........C......................................... TTTCGCAACCTCTAAACATCAT 34914 53 100.0 0 ..................................................... | ========== ====== ====== ====== ===================================================== ====================== ================== 4 53 96.7 22 ACTCATATTAGTTACACTGCTTACATTCCAGTTATCAAGTGGTTGATTGAAAT # Left flank : TTATTAAGCGGTTGATTGAAATCATAGCAACCATAAAACATCCCTCTCATATCAGTTACACTGCTTACATTCCAGTTATTAAGCGGTTGATTAAAATTTTCGCAACCAGCAAACATTCCGCCCATATTAACTACACTGCTTACATCCCAGCTCTCAAGTGGTTGATTGAAATTTTCGACACCAGCAAACATCCCGCGCATATCAGTTACACTGCTTACATCCCAGCTCTCTATACCGCTAAAATCTTTACGCTCAATCTTATAAAATAACTCACTCATATCAGTTATAGCGCTAGTATCTATATCACCTAAATTTACACTTTCTGCTATTACCAAACTTCTTAATTCATCTTTTGTTTTTGGATAGTATCGTGTTTTATTATTTACTATTTTTCTCTCTATAAAACATATCAACAAAAGTTCATCAATTAACTCTTGAGATAGTTTGTCTCTCCAGTTATTAAGTGGTTGATTGAAATTTTTGCAATCATAAAACATATA # Right flank : TTTCGCAACCTCTAAACATCCCGCTCATATCAGTTACACTGCTTACATCCCAATTCTCAATACCACTAAAATCTTTACGCCAACTCTCATAAAATAACCAACTCATATCAGTTATAGCGCTAGTATCTATATCACCTAAATTTAAACTTTCTTCTCTTACTAAACTTCTTAATTCATCTTTTGTTTTTGGATAGTGTCGTGTTTTATTATTTACTATTTTTCTCTCTACAAAACATGTCAGCAAAAGTTCATCAATTAACTCTTGAGATAGTTTGTCTCTCCAGCTATCAAGTGGTTGATTGAAATTTTCGCAATTTCTAAACATCTCATACATATCAGTTACACTGCTTACATCCCAGTTATTAAGTGATTGATTGAAATTTTCGCAATCTCTAAACATCTCACGCATATCAGTTACACTACTTACATCCCAGCTATTAAGTGGTTGGTTGAAATTTGTGCAATATTCAAACATCCCTCTCATATCAGTTACACTACTT # Questionable array : NO Score: 3.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.84, 5:0, 6:-1, 7:-0.90, 8:0.6, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : ACTCATATTAGTTACACTGCTTACATTCCAGTTATCAAGTGGTTGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:67.92%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-4.40,-4.60] Score: 0/0.37 # Array degeneracy analysis prediction: F [1-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [58.3-73.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,4.77 Confidence: HIGH] # Array family : NA // Array 1 3622-4010 **** Predicted by CRISPRDetect 2.4 *** >NZ_MJLG01000012.1 Campylobacter sp. P160 ERR473917.12448_4_65.12, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ==================================== ================== 3622 38 100.0 36 ...................................... AAGCTTCAGAACAAACACAAGAAGACAACAAACCAA 3696 38 100.0 35 ...................................... AGAGGAATAATTTTTGGAGATATTTGGAGGTAAAA 3769 38 100.0 18 ...................................... ATCATTTTCTTTTAACAG Deletion [3825] 3825 38 100.0 34 ...................................... CCCTAAAAACGCTAATTTTGCTAATTTATGGTTT 3897 38 97.4 35 T..................................... TAATTTTTCATTTTACTCATAACCAGCATTTTAAA 3970 38 81.6 0 .......G............TC..G..T..A......A | AA,T [3999,4006] ========== ====== ====== ====== ====================================== ==================================== ================== 6 38 96.5 32 AGTTGCAAATTATACCACAAATCAACTCGGTTTGAAAC # Left flank : CAGTTGAAGATACATATAACACAGAAGAAAAAGAAGCCATTGAACACAATGAAGTTGTAAATATGAGTAATGGCGAAATGATGGTATTTGAAAATGGAAAAGTTCATAGAGCGATCGCTTGCACAGAAACAAGTCTTTTAGAAGGCAAAACAACAACATATAAGCCAAAGGATTTAGAAAATCCTAAGATCCCTATCGTTCAATATGTTAGTAAAATTGAATTTTTTGAAATAGTTGAAGATTGTTTAAAAGATCAAGAACTAAAAAAATTAATCAATGAAAAAAATGAAATTTTGGAAATTGCAAGTTAAAAAAATAACTGGGGGTGCCATATGGCAGTTGCCCCAATATGAAAACACCTTGTGGTGATTTCAAACGCTATAGCTGGATTGTGGTATAATTTTTCCACAAATTCGCCATTTTTTGCGATTTTTTTCTAAGTGGAAAAATTTTTATAATTAACTAAGCACAAAATATCTAAAATAGGACATTTTACACTT # Right flank : AATCAATATTTTCTCTTTCTCTTTTTTTCGTGCGTCATTGTATCTCACTCTAAAAAATCGTCAAGAGCGTCGCTCATTTCATTCGCTTGTGGATTGCTCGTTTTACTTCGCAACTCTTGACTATTTTTTTCGCTCAATTTTTTCGCACTTAGAAAAAAGAAAAGAGAAAAATACTCATATCATCACAAAACACACCTTAAAATCCAAAAAAACACTCTAACCCATACCAACACCCCCCCCCCCTTTTTTTTTCACAAAACGCAAAATTTTGCTAATTTGTGGTTTTTTTGGGGATTAAATTGTAATACTTGGTATTATTTTTTTCATTTTACTCATAAACAGCCCAAAAAATCGAGCGGATTTGTGTCAAGAGTTGCGAAGTAAAACGAGCAATCCACGAGCAAAACGCACTTTTGCGACGCTCTTGACGCAAATAAAAGCGAGATTTTAAAATGCTGTTTTGAGTAAATGAAAAATTATGGTTGTATATTATTCAATTC # Questionable array : NO Score: 2.70 # Score Detail : 1:0, 2:0, 3:0, 4:0.97, 5:0, 6:0.25, 7:-0.32, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : AGTTGCAAATTATACCACAAATCAACTCGGTTTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.79%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.60,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [78.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0.37 Confidence: LOW] # Array family : NA //