Array 1 38838-38604 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPNH01000008.1 Lactobacillus panisapium strain 2-3 scaffold8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 38837 36 100.0 30 .................................... CATTATTATTATTATCATTAGTGTCAACTG 38771 36 100.0 30 .................................... TGAAAATCAGCGTAACCTTCCATATCCATG 38705 36 100.0 30 .................................... AACAATGAAAGTAGGTGCAGAATGGCTGGC 38639 36 86.1 0 .........A................C.G.G....T | ========== ====== ====== ====== ==================================== ============================== ================== 4 36 96.5 30 GTTTTAGATGGTTGTTAGATCAGTGATGACTAGAAC # Left flank : ATGGTTGTTAGATCAGTGATGACTAGAACGAAGTATCAATATTTAGCAACACTAGAGT # Right flank : AAAAGCATCTATTAATAAAGTTGGCTTTAGCTTGCCTTTATTGTCGAGCCAGAGCTGTTGGCTTTTTATGGCAATTTTAGACGCACAATTTTAAAAAGTAGCGAGTCCACGCCCCTTTATTTGGTAGTAATTTCAGAGATTGTTTGCCCCAGAGTTTTACGCCACCTGCTGCTTATGTGAATTAACTAATTTTGCTCAACAAAAAAAGCACATCGTTTGTGATGTGCTTTTTAGTGCATTTACATATAACTAGCTGTGAGCTGTTTTTACCCATGAATCATTCCCTTTTAATTGGCGGATTATGGCGCGATAGGGGATAAAGGCTAGCACCCAGCGATAAAAGGCAAAGCTAAAGATTATTCTAAAAATCTTTAAGTGATTTTTAGGTGGCTCTAAATTCGATTCGTGCCACTGCTTTTCAATCATTAACGTATTGACCAGGTTTTCTGTGAATAATAATGTGAAAATAATTGCTAAACCAATTAATGGTCGATAGAAAG # Questionable array : NO Score: 5.68 # Score Detail : 1:0, 2:3, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAGATCAGTGATGACTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:63.89%AT] # Reference repeat match prediction: R [matched GTTTTAGATGATTGTTAGATCAATGATGATTAGAAC with 92% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-0.80,-4.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [61.7-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.28 Confidence: HIGH] # Array family : II-A [Matched known repeat from this family], // Array 1 29279-29710 **** Predicted by CRISPRDetect 2.4 *** >NZ_NPNH01000005.1 Lactobacillus panisapium strain 2-3 scaffold5, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 29279 36 100.0 30 .................................... TATGATAACACCGTCAATTATCCATTTAAC 29345 36 100.0 30 .................................... ACATGATTTATATAATGGATGCATATCTTT 29411 36 100.0 30 .................................... TCGCTTAATATTTAATATTAAACTCTGAAA 29477 36 100.0 30 .................................... TGTTCAAATCTGTTAAATCATAATCATCTA 29543 36 100.0 30 .................................... CGCTGAATTAAAAAACAAGCAAAAAGATGT 29609 36 94.4 30 .................G..A............... AGAGTAGTTGGCTATCATGGCTCTGACTAT 29675 36 91.7 0 .................G.........A.......T | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 98.0 30 GTTTTAGATGGTTGTTAAATCAGTGATGACTAGAAC # Left flank : AATTCTTTTTGCATAACTGGCAGTAAAAATTGTTTAAGCGGTTAAATTTGGTAAATAAAACTGATTGCGTAGCAATTGCTGCATGGAACTACTTCATATTTTTATTTGAAAAAGCTTTTGACATGGTAGGAACAGGGTATTAATAGCCTGGATAAAGTCGCACAGAATAAGATATTATGCGTTTTTAGCAGCATTATTTGATGGCAGATTTACCGCTAGCAATTAGCTTTGATGAAGACTAGAAAAAGCTATTCAAAGGGCTGATTTGTATCTAGCTGAGAATATATTGAGTGAATCATATGCTATAATTGAAACAGTTCTATAGATTCATCAAAACTGTAACTTGAAAACAGTTATTTTGATAAGCAGGAATTAGTACTAATTGAATTCACATCTTCGGATTTTTTGGTTGTTCCCGGGGATACCTATTTTTATAACGTTATTGAAGGTTTAGTCGACTGGTATTAACTGCTACATTAAAATTTGATGATAAAACATCT # Right flank : TAAAATAGCCGTAATAAAAATTGAATTAAGTTAACTTCAGCATCAAGCTTAAGCAGCTAGCTTTTTATACTAATTATGGACGTAAATTTTAGAAAGTAGCGAATTCACAGTCTTTAGTAGTAATTCAATGGGGTGTTTAACCCAATACTTTCCATTACTTGCTTAATTATTTAGTTAATTTTGCTAGTTTTATCCAAAACAAAAGCCCTATTAAATAACGGTTTATTTAATAAGGCTTTTTAATTTTAAAATACTTGCTTGTTAATCAAGTTCCTAGCCAAAAGGTGTTAGCTTGTCAGATGATTTTAATCTAGTTGATTTCGATATCACCGCTTTTACTAATTATTTTGAGTAAAGGAGCCCCGTGATACATTTTCTTATAATGCTTTCGCTGCTCACGCCCTTTAACTTCGATATCACTGTCGGAAGTAGTTGATAAATCATAACTGATATTAGTCATCTGATATGATTCAAAATCACCGTCGTTTAATTTAAAAGTG # Questionable array : NO Score: 3.16 # Score Detail : 1:0, 2:0, 3:0, 4:0.90, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGATGGTTGTTAAATCAGTGATGACTAGAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-3.90,-1.20] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [71.7-68.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA //