Array 1 384-57 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMMF01000243.1 Roseibium sp. RKSG952 Contig_1999, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 383 28 100.0 32 ............................ TGTCCGGCAGCCCAAAGCGAAACCGGCATGAC 323 28 100.0 32 ............................ GTCAAACCACTGTGGAAACGAGCGGTCGGGCT 263 28 96.4 32 ...T........................ TTTGGAAAGATCGCCGGACGCAGATTTCAAAA 203 28 96.4 31 ....T....................... AGCGGGCCTCACGCACTGAATCCTTTTCAAT 144 28 96.4 32 ....T....................... ATCACGGGAAAATTGCTGATCTGACCAGTCTA 84 28 89.3 0 ....T......C.C.............. | ========== ====== ====== ====== ============================ ================================ ================== 6 28 96.4 32 GTTCGCCGCCGGATAGGCGGCTCTGAAG # Left flank : CTCTCAACGTTTTCAGTTGTATCACTGTGAATTTTGAG # Right flank : GTCGTCGCAGCCGTTGAAGGTATCGATGTTAACGTCTTCCCCGCCCTGAAGGACGGG # Questionable array : NO Score: 2.77 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCGCCGCCGGATAGGCGGCTCTGAAG # Alternate repeat : GTTCTCCGCCGGATAGGCGGCTCTGAAG # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [3-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [38.3-40.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 431-163 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMMF01000250.1 Roseibium sp. RKSG952 Contig_666, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 430 28 100.0 32 ............................ TCGAACTCCTGATAGGGATCAGAGGCATAATC 370 28 100.0 32 ............................ CCGAAGCTGCGCCACGAGTACGTTGCTCAGGC 310 28 100.0 32 ............................ TTTACGCAATCTTAGTTGAGCGTGGTGTTGCA 250 28 100.0 32 ............................ AATCGCCGGCGTCTTCTTCGCGGGTAAAAACG 190 28 82.1 0 ..........A........A...CC..C | ========== ====== ====== ====== ============================ ================================ ================== 5 28 96.4 32 CCTCCCCGCCGGATAGGCGGCTGAGAGA # Left flank : | # Right flank : CCCGATCTTGGTGACGAACGCGACGTCCTGTCAAATGTTCGATTTGTGTTACTTCCGACCGAACGCCACCGGCATCGAAGTGCTTGGCAGCGCTTTGAGAAAAACATTATTTATCAGAGACATAAAACCTGAACACCAAATCGGCGCAGTCATGAGGTTCAGA # Questionable array : NO Score: 2.88 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCTCCCCGCCGGATAGGCGGCTGAGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-9.20,-9.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [48.3-0.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,1.15 Confidence: MEDIUM] # Array family : NA // Array 1 209-3 **** Predicted by CRISPRDetect 2.4 *** >NZ_SMMF01000023.1 Roseibium sp. RKSG952 Contig_668, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ================================== ================== 208 26 100.0 34 .......................... TCAACCGCGTCGTCTGTCTGATCAATGCGCTGCC 148 26 96.2 34 .................A........ AGTCAACGAGTGTCAGGGTTTCCAGCGCAAACCC 88 26 100.0 34 .......................... ATTGCAGCGAGCGCAAATGACGCCTGCCAGATCC 28 26 100.0 0 .......................... | ========== ====== ====== ====== ========================== ================================== ================== 4 26 99.0 34 TCCCCGCCGGATAGGCGGCTGAGAGA # Left flank : | # Right flank : ATC # Questionable array : NO Score: 2.81 # Score Detail : 1:0, 2:0, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TCCCCGCCGGATAGGCGGCTGAGAGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [3,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.40,-6.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [1.7-0.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.41,0.74 Confidence: LOW] # Array family : NA //