Array 1 62041-62276 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLX01000003.1 Porphyromonas gingivalis strain WW2096 NODE_3_length_154428_cov_14.6093_ID_23194, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ====================================== ============================ ================== 62041 38 100.0 28 ...................................... ATCGCAAGTACGAGGAGTTGCTCCGATA 62107 38 100.0 28 ...................................... TCGACCCAAAAAATCCTCAATTTAATCC 62173 38 100.0 28 ...................................... GAGATGTTGACTAAGCTTACTCTTTATA 62239 38 97.4 0 G..................................... | ========== ====== ====== ====== ====================================== ============================ ================== 4 38 99.3 28 TGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACT # Left flank : ATATCGTTTTCATTTTGTATATAAATCATTTTTAATTTATATATAAATCGATTGCGATAAATATATAGATTGTAAGCCCGATTTGATATAAATCGGACACCTCAAAAGGCCTTTAGGGGAGGTAAATAAAGAGGCACCCACCGAGTTCGTGCAGGAACTTGATGGGTGCCTCATCTATTTCGAAGGGGTACGAAACGGCTCTCAGGCTCTACCGCTCATACAGCAGGCTTGTATCAGCCATACGCAATGCCGGCATATAACCACACAGGCCGAACGAAACCGGCCGAATAAGAATGCAGGGAAGAGAGGAATCGGAGCACATATCTATCATTCATTTAGTCGTTTACAAAGTCATTCCATAGAAAGGGAAAGCACTCCCGGTACAAATTCACCGAAGAGGGGAGCAGCTTGTCCGCCTGCAAATGTAGCGAAAAAGCCCAACGAGGAAGAATCCCCACACTACTGCACATTCCAACGCCCAAGCCACCAATCAAGAATCA # Right flank : TACCCCCATCGAATTTGAAACCGATTGAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAGAAGTCATCATTCCACAGAAAGTGAGTGACGGTAAGGCTTTGGAGCCACTGCAAGCCGGCGAAAAACAGTCTGTCATCATCATTTTAGTGGGATTTTAGGATTGAAAAAATGACTCTCTACGGTCGGGTTTATGCTATTTTCTCTCAAAAAATCATTCCTGTGCTCCTGCCGGTTCGCACTCAAAAGTTCAACGTTCGCTTCTTCAGTGCGATGGCTTCTCTAACGGTTTGGGTAAGCTCCTGATAAATGCTGATCATCCGTTCGGCCGTTTCGGGCTTGTTCATCACAATCCTCTCATCCGAGTTCTGCCTCTCCGAAAGCAAAAGACCGTAAACGATACTCCTATACTCAAAGATACGGGAAATAATCTCTTTAGACAAGAAAATACCGTTCCCATTCTTATAAA # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TGTTGTGTGTACCCTTCGAATAGAGGGTAGATCCAACT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:55.26%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-10.40,-7.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [50.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.78,0 Confidence: HIGH] # Array family : NA // Array 1 1134-2803 **** Predicted by CRISPRDetect 2.4 *** >NZ_NSLX01000041.1 Porphyromonas gingivalis strain WW2096 NODE_41_length_18034_cov_15.0615_ID_23270, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 1134 30 96.7 36 A............................. ACTGTCCGAGCAGCTCGCGCAGCAAAACATTTCCAC 1200 30 100.0 35 .............................. GCGCAAATGGTTTGGCTCCGAATCAGCCAAGCAAG 1265 30 100.0 36 .............................. TGATATATGGCAGGACAAAATAAATACAGCCTTGTG 1331 30 100.0 37 .............................. TACCGCTCTCTCATCTCTTCGTCGGACAAGTTGGACG 1398 30 100.0 36 .............................. AAGCTCGCAAAGAGAACGAAGATATGATAGAAAGCC 1464 30 100.0 38 .............................. CCGCACCGTGCCTTCATCCGCTTTCGTGATATTGTCTA 1532 30 100.0 36 .............................. ATTGCCTGTAGCAGCCTCGCGAAATGCGCGCAACAA 1598 30 100.0 34 .............................. AATTTGCGAGTAAAAGCAGAAGTGGAAATAATAG 1662 30 100.0 35 .............................. CGGACCGAAAACGAACCGGGGCACGATGCCCAGGT 1727 30 100.0 36 .............................. TGAACCTCCTAAAGACCAGCCCGACGGAAAAGCCGA 1793 30 100.0 36 .............................. CAGGGAGTAGTTCCCTGCACGAGTTAGGTTATTCAT 1859 30 100.0 36 .............................. ACGCCAGCGCGGATGACCTGCGATACATCCGCCTGA 1925 30 100.0 36 .............................. TTTTCTGAGTCTTACAACCATATCACCCGCTCTCAT 1991 30 100.0 36 .............................. GGGCGCGCATATCGCTTACTACGATGTCGAGACCGC 2057 30 100.0 35 .............................. ACGTGCTCGACCTTCCACGCTCAGAGGATGAGCGT 2122 30 100.0 35 .............................. CGCCCAGCCTCCTCAAAGGACAGCTTATAAAGGCT 2187 30 100.0 36 .............................. CTTCATCTGCGTGCGTTTCGCTTCCACCCAGGCGTT 2253 30 100.0 36 .............................. AATCTTTGCCATCGAATCATCCACGTATCCCATCTC 2319 30 100.0 36 .............................. TCGGACCGAAAACGAACCGGGGCACGATGCCCAGGT 2385 30 100.0 36 .............................. TCTGCAGGTAAATGGCATGAGCCCTGTCAATCTGAA 2451 30 100.0 36 .............................. TCCTGCTGCAGCAGGAGCCGACTTCCACGATGAGCG 2517 30 100.0 34 .............................. TTAGACTATATGCCATCTCCGCCTCCGGAAATGG 2581 30 100.0 32 .............................. CGGTTGTCCACGAACTCCAGCCCGGCAAACCG 2643 30 100.0 36 .............................. GCCCGTGCCGCTGCCGCTCAGCGACTGCTCAACACG 2709 30 100.0 35 .............................. TCAGAAGCTGCTCCACAGAATCGAAAGAGCTATCG 2774 30 100.0 0 .............................. | ========== ====== ====== ====== ============================== ====================================== ================== 26 30 99.9 36 GTTTTAATTCCTGTATGGTGCAATTGAAAT # Left flank : CTACCCTGCTTTGCAGCTCCACAAAGCGATTATAAGAGACAAGATGTGGGAACTCGGATCGACAAGAATGGGTAATGTATTGAAGATAAAAAGCTTTCAAATCTCGGTATCTTGACAGATGAAACAGGATCAGGATGGTCATGACCTCACTGTCCGACATCTTAAACTTTCTATTCCTGCGTTTTTTGTCTGCCTCTTCGAGGGTCTTTTTCTTGATTGTTTCATCAAAAAGCTTGGAGAAATCATCTATGATGCAAAAAACATCAACTATATTTGTCTTCATAAAGTAGCGTTTTGTTTGTTCGTATCTTATTGATTGTCAACTGCTAAGATACAAATAATTCGCTACTTTTTCAAGCATAATGCCCACGTTCTTTGGGCGTTTACCACTAATCAGAAAACAAATTCATTGGTGTTTTCTTACGTCGAACTGACGTTAAAAAACAAGCCAAATAACCCCGAAACTAGTTGTCAGTTTTTGGAAGTAGTATAATGGATAC # Right flank : TCCGTTACAAATATAGGCTTTTCTGTTTGAATGTGAGGAGTTTACGAAAAGGTGAAACCCAAAATTCAGACATTCATAGTTGTCGATGTCTGATTCTATGAAAAACCAAGGGGTGTGACGACTGATATATTTTATTGATTATCAATCATTTCAAAGATCGCCGGAGGTTAATCATGGCAAAAGGCTTGATGAATTTGCTCGAGCCGACGCTTCAAAAGATAGATAGCGGGAGCTGTATCGTGCTGTATTATAGAAATATATCCGTTGCAGAACGCTCTTTGCCAATTATTTCTTTTTCCAACCAACGTTCTTGTCTGGAAGAAAATATGATCAGACTATCTTCTTCTTTTTCCATAATTCCGGCTGCTCTGCTCTTCAGCTCTAAGAGCTTGACTTCCGATATTTCCCCCTCGAACACAGAGTTCTGAATCCAATTCAGATATTTTCTGCACAGTTTTAACATTTTGCCAACACGCTTTTCACCGATATCGTACACTAAA # Questionable array : NO Score: 9.26 # Score Detail : 1:0, 2:3, 3:3, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAATTCCTGTATGGTGCAATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [-0.40,-0.20] Score: 0/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.41 Confidence: HIGH] # Array family : NA //