Array 1 682-53 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPRV010000025.1 Pasteurella multocida strain MOR19 contig_25, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 681 28 100.0 32 ............................ TTATGAACGATGCCCGCAGGATCATATTTACT 621 28 100.0 32 ............................ ATTCGTGACAAAAGACGAATATAAGAAAAGAA 561 28 100.0 33 ............................ GTCGTTGAAACGGCACCATGGGCGTTTGCATTT 500 28 100.0 32 ............................ GAAACACTAGAAGATTTAACGGTCATTGAAAA 440 28 100.0 32 ............................ ATTCGATTTCCAGTGCCGAAAATCCATGCCCT 380 28 100.0 32 ............................ ATAATGACGTGTTCAACTAACGGCTGACAATC 320 28 100.0 32 ............................ CACAACATGTGCTGAAAGTGCGTGAGATTTGA 260 28 100.0 32 ............................ TACCCGATGTTAGAGGCAATCAAAGTGGAGCT 200 28 100.0 32 ............................ AAAGTCTCATTTAACACCGCGCGACGCTGGAA 140 28 100.0 32 ............................ AAGCCCACCTTGCGCTTGAACAGATGAATTAA 80 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 11 28 100.0 32 GTTCACCATCGTGTAGATGGCTTAGAAA # Left flank : CAATTACACCAACAATTATTGCGATCTGGCTTATCAGATTATGCTTTAATTAGCGAAGTGAGTAAAACGCCGTTGTCTACCGAGTGCCGCAGTTATAGTCGAGTACATCGTAAAGGGCAAAGTGCCATCCGCCGTACCGAAAAACGCTTGAAAAGTCAGGGAAGATGGGATGAGTCCATCCGTGCAGACATGCAACAACGTCAGCAAAATGTGGCATTTTTCCCACATTGTCATTTAAAAAGTGCGAGCACTGGTCAACGTTTTATTTTGGCAGTGAAAGAGAACAGAATGCCACAATCTTGTGTTGGTGTCTTTAATGCTTATGGATTAAGCAATAGCGCAACTGTGCCTCACTTTTAATCGCATTGTTAACCCTTTTTTCTTATTTGGAATGTTTCCGAATAAGATCAAAGGGTTATTGTTCTACCCTAAAAAAGGGTTTTCTTTTCAGATGTTCTTTAACAAATTGAAATATCCGAAGATATAACAAAATTCATTTA # Right flank : ATTTAAGCTACGTTTATCCGCAAGATTCACTACGTTCACCATCGTGTAGATGG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACCATCGTGTAGATGGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: R [matched GTTCACCATCGTGTAGATGGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.70,-6.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [50.0-78.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.14 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 19610-21017 **** Predicted by CRISPRDetect 2.4 *** >NZ_JADPRV010000015.1 Pasteurella multocida strain MOR19 contig_15, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 19610 28 100.0 32 ............................ ATGCTAGCGTATGCCACAGGGTCAGATTTAGA 19670 28 100.0 33 ............................ TCTCGGGGCGTGGTGTGTATGTGTTCTTTAATT 19731 28 100.0 32 ............................ TAATCTGTGCTTTTCTTCTGTGTATTTCTTCA 19791 28 100.0 32 ............................ GAACATTGTGATCAGCGAATTTAGAAACGCAT 19851 28 100.0 32 ............................ TTGGACTTGTGTCAGTAACTGTAACCGCTCAA 19911 28 100.0 32 ............................ GTTGCAATTCAACGTGGTGAGCAAGAAATCAA 19971 28 100.0 32 ............................ GTTGGCCGCTACAAAATTGTCACTTTCAATAC 20031 28 100.0 32 ............................ GCTGTATAAGCGGTTAAAAAAGTTATATTTTT 20091 28 100.0 32 ............................ ATTATTTCTTTCAGGTGTTGGGGGGATTGAAT 20151 28 100.0 32 ............................ TTTTGAATGCTCATCACGCATTTGTTGCAACC 20211 28 100.0 32 ............................ GCTTGAAAGTGTTGGCTTGAAACTTTCGGGGC 20271 28 100.0 32 ............................ TTGATCGTTTGCGCGAAATACCAATTTTTTTA 20331 28 100.0 32 ............................ AACAGCTCTTACACCAGCGCAAAAATTTGCGA 20391 28 100.0 32 ............................ GAATGAGGCACCTGAATCTGGCAGTTCTAAAC 20451 28 100.0 32 ............................ TCCCACCTATCCGCATCCTCAGGCCACTCACC 20511 28 100.0 32 ............................ TAGCAATGGCAACAGCCTTTTTTATTATAGTT 20571 28 100.0 32 ............................ TCGCCTTTTGTCGCAAACCATTTGCGCACCCG 20631 28 100.0 32 ............................ GCAATTTTGGGTATTCGTTTTGATTCTGAATA 20691 28 100.0 32 ............................ AAAAGCATTCTGTTTACGCGTAAAAGGATCAA 20751 28 96.4 32 ............G............... AGCTTTAAGCTCTGCAAATGCCGAACTCATAC 20811 28 96.4 32 ............G............... GATTATTTTAAGCAACGGAGCGGAATTACACT 20871 28 92.9 32 ............G....T.......... GTCATCTTCCAATTCTTCTGTTTTCTGCTCTT 20931 28 96.4 32 ............G............... TAAAGCGATCTTGGCTCGATTATCAGATTGGT 20991 27 85.7 0 ....................-..TC..T | ========== ====== ====== ====== ============================ ================================= ================== 24 28 98.7 32 GTTAACTGCCGTATAGGCAGCTTAGAAA # Left flank : CATACAGCGCAGATACCTATTTGCACCGTATTGGACGTACTGCACGCGCAGGTAAAAAAGGCGTAGCGGTGTCTTTTGTGGAAGCCCATGATTATAAATTGTTGGGTAAAATCAAACGTTACACCCAAGAATTACTGAAAGCACGTATTATCGAAGGTTTAGCTCCTCGCACCAAAGCACCGAAAGAGGGAGAAGTTAAAACGGTCAGTAAAAAACAAAAAGCCCGCATTAAAGCAAAACGTGAAGAGAAGCAAAAACAAGAGCAAAAGAAAAAAGTGAAACTACGTCATAAAGATACGAAAAATATTGGTAAACGTCGCAAATCCAATACACCTCCTGCTAACGCAGAATAATCACATCTAAATTGCTAACCCTTTTTTCTGGCTAGATTATTTATCTAATAAGATCAAAGGGTTATTTCTATGTCTAGAAAAAGGGTTTTTAACAGTTTGATAGGCGCCATACTTGCTGAATAAAGGGATGTCGATTAGACTGTTTTA # Right flank : TTGACTGTTGGTATATTACTAAAACAGTTGGATATGGGGATCGGTCTGTTAGCTTATATCGTGTTTAACGATAAAAGTGCGGTCAATTTTTGGAAAATTTCATCAGCTTCAATCTTATCCATACTCTCAGCAACGAGATAATGCTGGTTTTTGCCGTAGGAGCCGATCAGTTTGGGATCCGTAGCACCATAGAGAGTCAAGTTGGTTTTATCGAGTGCGGCACTTAAATGTGCCAATCCGGTGTCAACAGAAACAACAGCGCTGGCATTCACAATCTGCTGTGCTAACTCGGATAATGTGGATTTTGGCAAAATCGTCACAAGATCAAGCCCTTGGGCGATCCTCTCTGCACGCTGTTTTTCTTGAGGATTTGACCAAGGTACGTGAATTTGGATACCCTGTGCGGTCAGTTTTTCTGCTAATGTCCGCCATTGTTTGTCCGGTAGAAATTTATCTTGGCGTGTGGTGCCATGGAAAAAGAGGACATAAGGCATCGTTTG # Questionable array : NO Score: 6.20 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTAACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: F [matched GTTAACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //