Array 1 181762-182062 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRJC010000002.1 Streptococcus equi subsp. zooepidemicus strain SEZ_18-054 tig00000002, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== =============================== ================== 181762 36 100.0 30 .................................... TTGGAAGACATACCAACGATTTGCTAAACG 181828 36 100.0 31 .................................... CTCCACTAAATCAAAACCATTATAGTGTAGT 181895 36 100.0 30 .................................... TCTATTAAGTAGATTGTGTCCTTTTGTGAC 181961 36 100.0 30 .................................... AGATACTATAAAAGACCAATTAAAAATTAT 182027 36 83.3 0 ..................T......A...TT..T.T | ========== ====== ====== ====== ==================================== =============================== ================== 5 36 96.7 30 GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Left flank : TTACAGGTGTTTAAATACCTCACAAAAAAGAAATTATTAGTTTTTGTTAACAGTGGCTCCTACTTTACTAGAGAGGAATTTGAGCAACTAAAAGAATATGTTGAATTGTCAAATCAAACTGTTCTCTTTTTAGAGCCAAGACCTCTGTATGACTTCCCACAATACATTTTAGATGAAGATTATTTTTTAGTTACACAAAATAAGTTAGAAGGTATTGAACATTAAGGATAGGGTAAGTGTTTATGTTCTCTTAGAAATCAACCGTCCAGTCAGGTAGCGGTTAGTTAAGCTCTCTAAGTAGATGAAAGTTGGATTAATCATGTATCATAGTTGGTAAATTAAAGATTGACGATAACAAAATGGCTTGGGATAGGGGGAACCATTGAGATAATATACTTCTTGAGTTATAATCTTGATAGTTCAAAGATTACTTGCAGTTGAAGTTTAGCCACGACAAATAATCTGATAATGACGTCTTATAGCAAAAGATGGTCTACGAG # Right flank : TCCGTAAATGATTAAAAGGTAACAGTTGCAGTAGTAATTGGTCTTCATGCTTGCTATTAAGCAAGTAACGATTGCTAATGATGGGTAATACTACGATAGTGATTGTCATTGTATGGCCTCTTTTCTGCTGGCATAATGGGGACAAATTAAGGGAACTGTAACTTCCCTTTCCCCACCAAAGGGGATTTATGCTTGCGATAGCTTAGGTTGTCGGTCAGGTTAATCAATATTTTCAGGTAAGATATGTTTGATGTAGTGGTTGTTGAGGAAATTACCCTTATTTTTATTTTTCTACCCTACTACTGGCAGAAAATGACCATAGAATGAACTGGTCTGTTTAATCTGTGATTTATCAAACGATTGTCAATCTTTTGGCAATAGCTCGTTTGCTGTTACACCAAAAATGTTATGCAGCTTGATTAACTTTTTGATTGGAGCTTTGCGCTGGCCATTTTCTGTCATACTGAGAGTTTGTTTGTTGGTTTCTAGTAGCTCAGCAA # Questionable array : NO Score: 5.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.84, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:66.67%AT] # Reference repeat match prediction: F [matched GTTTTAGAGTTATGCTGTATTGAATGGTTCCAAAAC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: NA [-0.50,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-65.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 2 1021427-1019013 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAHRJC010000002.1 Streptococcus equi subsp. zooepidemicus strain SEZ_18-054 tig00000002, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ========================== ========================================== ================== 1021426 26 100.0 39 .......................... AAAAGTAGCTTAACTTGACCAGCAATTTTTAAAGTCTCG 1021361 26 100.0 40 .......................... AGATACTCGATATTTGACATCAAGAGTCGTATCTGTCTCG 1021295 26 100.0 41 .......................... CTGAAATGCTAAAGAATGGTACTCCCGCCTCTCCAGTCTCG 1021228 26 100.0 41 .......................... CCCAACTACTTTAAAAAGGATTTGTAAAAAGTTTAGTCTCG 1021161 26 100.0 40 .......................... CATAATATATAAGGAGCAAACAAAAAATATGAAAGTCTCG 1021095 26 100.0 42 .......................... TAAGATTGATTTTAGCTCAAAGAGCAGATAGCCAACGTCTCG 1021027 26 100.0 40 .......................... ATAATGAGCTTTCCTTTAGCTAAAGCTTGCGGAGGTCTCG 1020961 26 100.0 39 .......................... ACTTTAGGAGCAATTGCAGTCGCAATGATGATTGTCTCG 1020896 26 100.0 41 .......................... ACAAAAAAATAAAGCACCAAGTTTTCCTTGGTGCTGTCTCG 1020829 26 100.0 40 .......................... TGATTCTCATAGTTACGGGTCTGAATGCGTCCTGGTCTCG 1020763 26 100.0 40 .......................... AAGTAAACTCTGAGCTTTCTTCATTTTACTGCTTGTCTCG 1020697 26 100.0 40 .......................... TTCTGAAAACGGAGGAAATATTTGATCGTGTTCCGTCTCG 1020631 26 100.0 39 .......................... AATCAACATTGTACCAATCAGAAAAGGCTCAGCGTCTCG 1020566 26 100.0 40 .......................... TAAAACTGGATTGAGATTTTCCGAGGCACAAGGAGTCTCG 1020500 26 100.0 41 .......................... TTTCCAAATAAGGGGACTAGAGAAGATATTTTAAAGTCTCG 1020433 26 100.0 41 .......................... AGTATATGGCAGAGGAGAATCCCATTTTTTATAATGTCTCG 1020366 26 100.0 39 .......................... TCAATTTTTTTGAAACAATTGGAATAGTCTTTCGTCTCG 1020301 26 100.0 41 .......................... ATAATTAACCTCCTAACTGACTAAAAGCCACTTCCGTCTCG 1020234 26 100.0 40 .......................... TACGATTATCATTTAAATACTAAAAAAACTACAGGTCTCG 1020168 26 96.2 42 A......................... CATATCTCCTTGGGTTATCTGTGCCATCAAGGTTAGGTCTCG 1020100 26 100.0 41 .......................... TGATGAAGCTGCTACAAAGCGTAAGGAGGAGTTAGGTCTCG 1020033 26 88.5 41 ...TT.G................... TTTGGCATGCCTCACATCAGACTCATGTCTAGCATGTCTCG 1019966 26 88.5 41 ...TT.G................... CCGACACTGCGAACTAATCATTTGTGACTCCTTTCGTCTCG 1019899 26 88.5 40 ...TT.G................... CTAAAGAGGTGAACGAATGAATAAAAGCGAAATCGTCTCG 1019833 26 88.5 39 ...TT.G................... CTCTAATTTTAATAACTCCTGAGCACCAGTTTGGTCTCG 1019768 26 88.5 40 ...TT.G................... TTTATGTTTCTCAATCCAATCCGAAACAAACTGTGTCTCG 1019702 26 88.5 40 ...TT.G................... ATGTCAGACCATTGAGGAGACTTAATGAGCGACCGTCTCG 1019636 26 88.5 40 ...TT.G................... ATTTATCTTACACATTTATTATATCAAATGCCCTGTCTCG 1019570 26 88.5 42 ...TT.G................... CCTTGATAAAGATCTATTAACGCTAATCTAACATTTGTCTCG 1019502 26 88.5 41 ...TT.G................... TCTCTGTTATCTGTTCTCGTTCGAATTCGGCAATTGTCTCG 1019435 26 88.5 40 ...TT.G................... TTCATCAGTTTTTACAAAACTTGCAACAGTTATAGTCTCG 1019369 26 88.5 39 ...TT.G................... TTGTTATTTTTTATTTTGCTATGATACTATATTGTCTCG 1019304 26 88.5 40 ...TT.G................... ATAGGCGCGGCCTACCTTGGATAAATCCTTGACAGTCTCG 1019238 26 88.5 40 ...TT.G................... AAGTAGTAACTCATAGTTTTTTTGATTATCAGCCGTCTCG 1019172 26 88.5 41 ...TT.G................... CAATCGTTGAAGATCATCATGCCACCGTTTTTAGTGTCTCG 1019105 26 76.9 40 ..TTTC.T.......C.......... ATCCGATAGGTGATTTTACGGTGCTGACTCTCCAGTCTCG 1019039 26 80.8 0 ..TTTC.T.................. | T [1019015] ========== ====== ====== ====== ========================== ========================================== ================== 37 26 94.4 40 CCCCATACGGGCGAGTGGATTGAAAT # Left flank : ATTCGAGGGGATATTGATAGCTACCCACCTTTTATGATTTAGGAGATTACTGATGATGGTATTGGTTACCTATGATGTGAATACAGAAACAGCATCAGGGCGAAAACGGCTACGTCAGGTAGCAAAATTGTGTGTTGATTATGGCCAGCGCGTGCAGCATTCGGTCTTCGAATGCTCGGTAACACCTGCTGAATTTGTTGAGATCAAGCATAAGCTGACGACGATTATTGATACAGAAGTGGATAGTATTCGTTTTTACTTGTTAGGAAAGCACTGGCAAAATCGTGTCGAGACGCTAGGGCGTTCTGATAGCTATGATCCTGATATAGGTGTCCTACTTCTGTAAAAGGAGTGAGTGCGAGCCTGAGTCACTCATAAAATGCTAGGAGACTCGCGCTAAAATAAGCTAAAAAAATAGAGAAATGAGAGGTTATAGCTAAATATGTTATTGGCTAGCCTATGTCAGTTCTCTATAAACTGTGCTATGCTGCGCAGTCTCG # Right flank : GCGATACGTGACTTTACGATGTTGCGACTCCGTTTTGCCCTTTGTGGGTGCGTGGTCCGTATTCTTTGTTTTTCATGAAGGGATAAATCATATCGTATTCATCAAGCTGATTTATGCTTTTTATGGTGCTATGTCAAATAGATAAAAACCAATCTGAGGTTGTTGCAACAGGATTGGTTTTTTCTTGTGATTGCAGATCAGACTTTTCAAAAGAACAAGCACATCATCTCAGCTAGGCTGGTGCTTGATAGCTCCTGAGCCCTTGTTTGCTGTAGCTGATAGGACTTTACTGATGGCCTAGTAAGGCATATCGTATCAAATTCAAGTTTTTTCATGTTACTGTCTATAGTTTGTCTGCCCTACTTTAGGTAGAATAGAGGTAACTTAAGAGAGGAGTTTATTATGGAATTAACGATGCTTTTGATGGTTTCAGTTTTCATTGCAGGGCTGTTATCATTCTTTTCCCCTTGTATCTTTCCAGTTCTGCCGGTGTATTTAGG # Questionable array : NO Score: 8.82 # Score Detail : 1:0, 2:3, 3:3, 4:0.72, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.84, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CCCCATACGGGCGAGTGGATTGAAAT # Alternate repeat : GTCTCGCCCTTTGCGGGCGAGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [7,7] Score: 0.37/0.37 # Reference repeat match prediction: R [matched CCCCATACGGGCGAGTGGATTGAAAT with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-7.80,-6.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [12-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,9.68 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //