Array 1 34424-34837 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV791023.1 Staphylococcus sp. HMSC10C03 Scaffold331, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 34424 35 88.9 29 ...-..AA................C........... GAGCTATGTTGGAAGTGTGAATGGTGAGG 34488 36 100.0 29 .................................... ATATCATGGTTCAGTTCGCCCCTCTCTTT 34553 36 100.0 30 .................................... ATGAAGCTAAGTTGAGCAAAGATAATGTAC 34619 36 100.0 30 .................................... ACGTCGACCTGAACTCCGCCGTGATTCACG 34685 36 100.0 30 .................................... TATTCCTTTAAAACTTCTTGTTTTACAAGC 34751 36 91.7 15 .................................NNN NNNNNNNNNNNNNNN Deletion [34802] 34802 36 94.4 0 NN.................................. | ========== ====== ====== ====== ==================================== ============================== ================== 7 36 96.4 27 GTTCTACTTCATTCTAAAAGATCATAATTCTAAAAC # Left flank : TCACACCAAGCAACACAAGATTTTCAGTACCTTTGTTATACTCTAGAATTTCATGTGCGATACGTGTTAAAGTCCGCTGCATGCCTGCATCATCTAATACAATACGTTCTGTCATTCCCGCACTCACCTTTCCATAAAAAAATCCCGTATCTCAATTGAGAGACACGGGACACGAAGAACATGCGAGATTTACTATCTCAACTATTTAAATCAGTAACTGTTTTGTCGGTTACTTTACTAAATTTGTATGGCAATCAGGGTTGGTGAATTGCGTGTTCATACAAAATTACCTCTTAATAAAGTGTTTACTTAGTTACTTTCTCTAGTTTCAACATGTAAATTATCTGCCTTCGGAGCATCTCTGTACTCTCAATTAAAGACTTACATTAAACTGTACTAAGTTTAACACAGATAGATGAAAAGTCAAAGACATTTCCTAAACAAATATAAAGATTTTTCCATTCAAACAAGCATGATAAATAGTTAAGTTATACCCGCTT # Right flank : CCTTAAACAACGAGAAATCAAGGTTTTAGAGACCTTTATAATGACAGTAAACTAATATTTGTTCATAAATTGAATGAAGAACTCATCATCAAGATATGGATGTTGGCAAAATTCATGATAAGCTATCATTTTGCTTGTCTTATCCAAATCAGTTATTGTTTCTTTTTCTTTAAACAACAATAACTCTTCTCTTATTTGTTTAGTATTTACCGGTTCTCCATTCATTTTAATAAGCGCTAATGTATCTGACTCGATAATAAAATAAGGATGACTCGTAACAATAATACTAAACATATTTAGAGTCTGCAGATATTTTTTAAATGCCTTCATATCCGAAAGCCCTAAATGAGCTTCAGGAAATAACAAAACCAACACATTTTCTTTTTCTGTTGATGTTAATGTGTCTATAAATAACTTGCGTTGCTCTATCGCATTTAAATCATCTAAATCATTATGAAAGTCTGGTTTAAACATGCCAAGCAACTTTTTCAAAACAATAT # Questionable array : NO Score: 2.82 # Score Detail : 1:0, 2:0, 3:0, 4:0.82, 5:0, 6:0.25, 7:-0.25, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCTACTTCATTCTAAAAGATCATAATTCTAAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:75.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,-0.50] Score: 0/0.37 # Array degeneracy analysis prediction: F [4-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [73.3-71.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [0.41,0 Confidence: MEDIUM] # Array family : NA // Array 1 202276-202444 **** Predicted by CRISPRDetect 2.4 *** >NZ_KV791010.1 Staphylococcus sp. HMSC10C03 Scaffold227, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ============================== ================== 202276 36 100.0 30 .................................... ATTGTCCGCAACAGCAACATCAGTCACATG 202342 36 100.0 30 .................................... ACTAACCCAAAAGGAACTTGAACTGCACCT 202408 36 72.2 0 ......................A.C.GCTTC.GC.G | T [202429] ========== ====== ====== ====== ==================================== ============================== ================== 3 36 90.7 30 GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Left flank : ATTATCAAGCAAAAGAAAAGGCGTTTTTGATTTATCTGTATCCAGAAGCGGGTTTAAGTATAAAAGAGCAAATTAGATTTAGAAAAACATTAAATGATCTGCCAATTCCAATAATAGTATTAACAGAGTCCTCATATTTTTTATCAGAGAATATCAAAGGTTTGAACTACTTTATCAACAATATCCAAATGATTACTGAAGAGTTTATTGATGATAGTTACTGGAATGCGCCAATTAATATAGAAATAGAAAAGTTTAAAGAGAGATTTGAGTATTTGTTTAAAAAATATTGTTCTTTTCTAGAAGTTAATCCTACAATTTCTAATTATAATTTGACGGAAATTGTTGTTTTCGATGATTTGGATCTTTATATAGTCATAGCTTTTTTAAAACATTGCAAATTTAACTATCAACTAGACATTGATAGGGAGAAAATTTCTTCAGCATTATCAGCGTATCTATTTTCTTAACCAAAATTCAAGTTTATAATTGTGCTAGAG # Right flank : GCTTTTTTCTATTTTCTGTCATTGACATACTTTAATGATAGGCATACAATAATTCTGAAAATTACGAAAACATCAGGTCTTTTGCATCACGAGAGGAGTCTTTTTATGGAACACACAGCGATGAATCATACTTCACCCACACATCCAGGGACCAAGATAGGTCCCAAATATTTTCTTTTTAACTTATTAAATGGGGTTGCGATTGGTATCGTAGCAGGTTTAATCCCGAATGCGATTTTAGGAGAAATCTTAAAAGCACTTGTCCCATTTAATCCAGTCTTTACGCAATTACTACACGTTACGACTGCTATTCAATTTGCGGTGCCTTGTTTAATCGGTGCGTTAGTTGCGTATCGTTTTAAATTTACACCTTTAGGTATCGCGGTAGTTTCAGCGGCTTCCTTTATTGGTAGTGGCGCTGTCGTCTTTAAACATAATGCATGGGTTATCACAGGTATTGGTGACTTAATCAACACTATGTTCGCAGCTGCAATCGCTTC # Questionable array : NO Score: 4.90 # Score Detail : 1:0, 2:3, 3:0, 4:0.54, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:72.97%AT] # Reference repeat match prediction: F [matched GTTTTAGTACTCTGTAATTTTAGGTATAAGTGATTC with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.60,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-15] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-75.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], //