Array 1 593-266 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFPZ010000065.1 Desulforhopalus vacuolatus strain DSM 9700 NODE_65_length_3989_cov_28.1093, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ====================================== ================== 592 37 100.0 38 ..................................... CTTAAGACGTTTTTAGCTTGTCCTCCATATTTAAATTG 517 37 100.0 36 ..................................... TATTGTTTTTTTTTAAAAAGTTTAACATCTTTTTCT 444 37 100.0 36 ..................................... GACAAACGGCCATAGGCGGCAAACCGGAAACCGGCA 371 35 86.5 34 ........ATA.........--............... ATTTTTATGTATGATGTTGGGAATGGTGATTGTT 302 37 86.5 0 ........A..C....C............C.....C. | ========== ====== ====== ====== ===================================== ====================================== ================== 5 37 94.6 36 GTCGTGGAGGGTCCCGGTTTGTAAACGGGGTTAAGAC # Left flank : CGTTGAAATTACCTTCAAGCCTGGTCACAAGGTGAAGTCAAATCAGGGTTGTGCAGGGAGTGATGGGGAAACGTTGGGGTATTTTGAACGAAACCTCTTTTCCAAACTGGCTCTGATTAAAGATGAGGTTGAGAAAGGAACGTATCGGCGAGTGGCCTGCTTACGAAAAAGAGTGGGATGGCTATTCCCTTGAGGAAAAACGCAGGCGGATAAGAGATTTTTTAAAAGAGGTCCCAACAGTTGAAATCGAAAATATGTAATAATTTCAAGGGGTCCGGTAATCGTTGTAAAAAAAAGATGATAAACTGCCGGAAATAAGGAAAAGCTAATGATATCAGCCTGATAGAGATGAAAATCGAAGAATATGCCGCCGGGCGTTGAAATCATTGAGAAAAATGGCAAAAAGGAGGGGTAAGTTCGGTGTGGCTTCGTGGCTGTTGGTCTGTCCGCCGGAAACACTATTGTAACCTGTTGTTTTCAATGGGGAAAAAAGAGGTACA # Right flank : CTTTTTCATAACAACCAGGGGGAAATATGAATGCCAGCGTGAGTTTGACCCAGGTCCTCTCCGACGCCAACCTCCTTCAGGCCTGGTACAAGGTGAAGTCAAATCAGGGCTGTGCAGGGACTGATGGGGTAACGTTGGAGGATTTTGAACGAAACCTCTTTTCCAAACTGGCCCTGATTAAAGATGAGGTTGTTTATGAAACATACCGTCCCTGTCCGCTGCTGCGTGTTTATATCCCTAAAAAAAACGGTGGATTGCGGCCTCTT # Questionable array : NO Score: 2.79 # Score Detail : 1:0, 2:0, 3:0, 4:0.73, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGTGGAGGGTCCCGGTTTGTAAACGGGGTTAAGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-5.10,-6.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [9-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [53.3-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.78 Confidence: MEDIUM] # Array family : NA // Array 1 125726-122539 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFPZ010000005.1 Desulforhopalus vacuolatus strain DSM 9700 NODE_5_length_209157_cov_29.8256, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ================================================ ================== 125725 32 100.0 33 ................................ AATCAAAACTTTTGCTGCATCCCTCACCCCATC 125660 32 100.0 34 ................................ TTTCCTGTATCCGACATACCAACACAGGTCGTCA 125594 32 100.0 35 ................................ ACAAAAGAGGCCACAGCATCACTTCGAAGATACTG 125527 32 100.0 34 ................................ TGTAAATTCTTCATCGTATATTGGACAAAAACTG 125461 32 100.0 37 ................................ ACGGCCGGTGGGAAGGCATCAAGTATTTTCACCGAGG 125392 32 100.0 34 ................................ ACGGGTAGCTTGTTGGTGACATAATACTCTCGTT 125326 32 100.0 36 ................................ ATCGACCGCATTGACTCAGGACAAAAGACCTCTTCA 125258 32 100.0 35 ................................ ACGTTGTCCTCCGTTTATTTTGATATAAAAACAAC 125191 32 100.0 34 ................................ GCTTGTGGTAACCGAGCCCGCTTTTTTTATCGCA 125125 32 100.0 36 ................................ AACAATGACGTAGCCCTCTGGTGTCTCAATATAATG 125057 32 100.0 34 ................................ CCAGAATATCAGGTCGATCACAAGAATGGAATAA 124991 32 100.0 34 ................................ AGGTCCTAATCAGAGCAGTCTGGTACAGCTCAAC 124925 32 100.0 33 ................................ CAATAAATTTTCCGCCTGTTGCAGTGGAAATTT 124860 32 100.0 41 ................................ TCTTGCTGGCTTGCATGATAAGATCTGCATCGGTATCGAGC 124787 32 100.0 34 ................................ TCTTGCCATTTATAACTGTCACCCATAACCCGCT 124721 32 100.0 33 ................................ GCAAGCACATCAATACACTGCTGAAAGAGGGTA 124656 32 100.0 35 ................................ CTTAATCTAGCGTTGGATCCGATAAAGGCGTCAAT 124589 32 100.0 36 ................................ GAGAACGATCCCATTTCCCCCAACAATGTATAATGC 124521 32 100.0 33 ................................ AACGACACGCCGCGAAATTTTCTTCTATTCAAT 124456 32 100.0 37 ................................ CCAAGACCGTGTCTGCATCTCCCCGAGTACAAAGACC 124387 32 100.0 35 ................................ CCCATCTCCGACATCATATCGAGAAGATCTTCAAA 124320 32 100.0 35 ................................ TCGGATATCCTTCAAAATACTTCCGGAGCTCCGTC 124253 32 100.0 35 ................................ CCTGTTGGTTCGGATGCTGCTGCAATGACTTATCC 124186 32 100.0 34 ................................ ACCACAAGTTTCGCGGTTGCAGCAGCAGCATAAA 124120 32 100.0 37 ................................ CCCCAAACGACCTCATGCGTGGCTACCGAAAAACATG 124051 32 100.0 34 ................................ AGGTTGCTCACGAGTTTTGCGGTTTGATCCCGAG 123985 32 100.0 38 ................................ AAGTGTGGTTCGCGGTGTCGGAATGCGAATCGCACTCG 123915 32 100.0 35 ................................ AAGTTGGCTGTTTCCTTCACCGACAAGGAAAACGG 123848 32 100.0 35 ................................ ACGTCTTCCTCCTTCTGTTTTTTGTTGGTAATCTG 123781 32 100.0 35 ................................ TCAACGATTACAGGCCCTTATAGACAGAAAAAACA 123714 32 100.0 35 ................................ CCCGGTCTCCTCCCCGCAATCGACATAGCCCCCGA 123647 32 100.0 34 ................................ ACAACAGACGCCTCAAGCGCAGAAGAAACACGTG 123581 32 100.0 34 ................................ ACGTGCTCTGATTGAAGGCATGGCGCAGAGCTTG 123515 32 100.0 32 ................................ ACCATTCGTCGCCGTCCGCCTGCCCGCCTCTG 123451 32 100.0 34 ................................ TCACGTGTATATGTCAACGAAACCAGCGTGACAG 123385 32 100.0 35 ................................ AACGGTGAGAGTGAGGCTGAGGCGTAACCCGCCAT 123318 32 100.0 36 ................................ GATCAGGATATTAGTGGGTTGAATATTGTTAATGTC 123250 32 100.0 34 ................................ CCCAGTCACAGCAATGGTCAGACTCGCCGACGAG 123184 32 100.0 34 ................................ CGTGATCTTCAGCACTGATTGGCTCATGGCGGGG 123118 32 100.0 39 ................................ ACGCCTGAGTATGGTTGCGCTTTTTGCAGAATCACACAT 123047 32 100.0 35 ................................ ACGCACCACTGACAGAGCCCTGCGTTGTCTTTGTC 122980 32 100.0 34 ................................ CCACTGCGCTCTGACATCTTTTGAACCCTGCTGC 122914 32 100.0 33 ................................ TCAGTGAAACCCGCAGCCTCCGGGCCACCAGCC 122849 32 100.0 36 ................................ AAGCGCCTTGTCACCGGTGAAGCCCATAACCAAGAG 122781 32 100.0 33 ................................ TCTTGATGGAGACTCTGAAGAGGTCGGGCCTTG 122716 32 100.0 34 ................................ CTGCTGCGGAGTTGCGCATGACGGCGAGAAAAGC 122650 32 96.9 48 ...............................T GAATAAACAAACAATGTGTATCAGCACACACTGCCTCGGGCAAAAAAA 122570 32 68.8 0 A..T....T..C...AA......A.GA..G.. | ========== ====== ====== ====== ================================ ================================================ ================== 48 32 99.3 35 GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC # Left flank : GATACCCACCCATGATATGGAGATAAATCATGATGGTTCTGGTAAGTTATGACGTAAAGACGAGTGATCCCGGAGGAGCGAGGCGACTGAGACGGGTGGCAAGGGTCTGCACCAATCACGGACAAAGAGTTCAATTTTCTGTTTTCGAATGTCTTGTGGACCCCGCACAATGGGTATCTCTACGAAAAAAGCTGATTGCAGAAATAAATGAATCTACTGACAGTCTGCGCTTCTATTTTCTGGGAGCAAATTGGAGAAAGCGGGTAGAACACATCGGAGCAAAAGAGGGTATTGACCAGGAAGGAGCATTAATTATTTAAGACTTAGAAGAGTTGCGCGAATCTTTCACATACAGAAAAACCCGGGAGGTTCGCAGGCATTGTTTTTAAACACTTTTTTAGATTTTTATTGAACTTTGGCAAAAGCGTGATTCTCAATTTTCCGGGAATCGCAAAATCGGAGAAATTAACTCAATCTTTTCGCAATGTTACAGATTGACA # Right flank : GTTTGTTGTAGAGACAGAACATCTCCTGTCTCTACAATCTCTAACCCAATTTTTTTACCAATTCGGATTACAGTGCTTTATCGATACTCTCGACAGATTTTTTTGCGTCTCCAAACAGCATCCACGCATTGTCTTTGAAAAAGAGAGGATTCTGCACACCGGCATAGCCGGTACGCATGGAGCGCTTGAAAATGATGACTTGCCTTGCCTTCCAGACCTCAAGAACAGGCATGCCGGCAATCGGGCTGTGCGGGTCTTCCAGGGCTGCAGGGTTGACGGTATCGTTTGCACCAATAACAAGGACAACATCGGTGTCGCCAAAATCGTCATTGATCTCGTCCATTTCCAGGACGATATCATACGGAACCTTTGCTTCAGCCAGAAGAACATTCATGTGGCCGGGAAGCCGCCCTGCCACAGGATGGATACCAAAGCGCACCTTCGTGCCGTTTTTCTTCAGTTTTCGGACAATTTCTGCAACCGTATATTGAGCCTGGGCG # Questionable array : NO Score: 9.22 # Score Detail : 1:0, 2:3, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCTCCCCATGCGGGAGCGTGGATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [6,6] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTCGCTCCCCGTGCGGGAGCGTGGATCGAAAC with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-5.90,-9.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [11-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 65303-65125 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFPZ010000018.1 Desulforhopalus vacuolatus strain DSM 9700 NODE_18_length_67363_cov_30.3353, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================================= ================== 65302 28 100.0 49 ............................ CTCCACGACAAACTTATTTTAGAAGCAATTTGAAGATTTGAAGGATAAT 65225 28 100.0 45 ............................ TTCCACGACTCAAGGAAAATCAAAGTTCTCTAAGTACCATAGAGA 65152 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================================= ================== 3 28 100.0 48 GTCTTAACCCCGTTTACAAACCGGGACC # Left flank : TTTCGATTTCAACTGTTGGGACCTCTTTTAAAAAATCTCTTATCCGCCTGCGTTTTTCCTCAAGGGAATGGCCATCCCACTCTTTTTCGTAGGCAGGCCACTCGCCGATACGTTCCTTTCTCAACCTCATCTTTACTCAGGGCCAGCTTGGAAAAGAGGTTTCGTTCAAAATCCCCCAACGTCACCCCATCAGTCTCTGCACAGCCCTGATTTGACTTCACCTTGTGACCAGGCTTGAAGGTGATTTCAACGCCCGGCGGTATATTCTTTGCTTTAAAACAAAAAGCGGTAAGACATTTTTTTTACCGCGAAGAACGCGAAGGAAGGCAGGAGAAAGGCAAAAGACGCGAAACAGTCTCATCCCACAACGGATGTTATCGAGTTTTGTTGCTCTGCTTTTTCCTGCCTCCTTTCTCCTTTCTCCTGTCTCCCTTTTTGTCTTTTTCGTAAACAGGCCACTCGCCGATACGTTCCTTTCTTGAATGAAAATGACCACAAGG # Right flank : CTTCACGACTGTACCTCTTTTTTCCCCATTGAAAACAACAGGTTACAACAGTGTTTCCGGCGACCAGACCAACAGCCACGAAGTCACACCGAAATCCACCCTCCTTTTTGCCATTTTTCTCAATGATTTCAACGCCCGGCGGCATATTCTTTGATTTTCATCTCTATCAGGCTGATATCATTAGATTTTCCTTTTTTTCTAAAAGGGATCATGATTAAATATCTCTATATCCACCACCGGAGATCGATACAACAAGCGTTTCGCTTTGCCATGCAATGCGTGGGCAATGGCCAGGTACATCCATATCGGGGCAGCCCCGGTGAGAATCACTTCTTTACCCTCGCCTGCCATTTTGACGGCCTCTTTTTTATACGTCTCAAGGTGGTCTATTTTTGCCTGGTTGTCATAAAGTTTAGATAAATCGATTTCTCTCGTCATCCGGTAACCCCCTGAATGGAAACAGTTCCATAGTCGACATCGTAACCAACAACATTCATATT # Questionable array : NO Score: 2.56 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:-0.09, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCTTAACCCCGTTTACAAACCGGGACC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [56.7-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,0.37 Confidence: MEDIUM] # Array family : NA // Array 1 37209-36655 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAFFPZ010000021.1 Desulforhopalus vacuolatus strain DSM 9700 NODE_21_length_48838_cov_27.1125, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 37208 35 100.0 40 ................................... CCTCACAGCCTTCCTGTATGAAATGCATTGCCTTAAAAAG 37133 35 100.0 39 ................................... CCGGATCATAAACAACCATCTTTTTCAGCCTTTTCTGTG 37059 35 100.0 35 ................................... CAATACACTACCTTGCAATACATTCAACACGTTAT 36989 35 100.0 40 ................................... TACCATGCGCACGCATCAATAGACGTTGCCGCCTGAGCAT 36914 35 100.0 39 ................................... TGGACGGGCACGTTTGCCGTTGCGCCGCATTGTAAAGGA 36840 35 100.0 40 ................................... CCTCCGGTGAGTCTTATCAGCCTGCTGGCCGATGTCAGCG 36765 35 100.0 41 ................................... GCTTTCTTGTAGAATCCTGCTATTTGTTTTTGACTTGTATT 36689 35 97.1 0 ..............................G.... | ========== ====== ====== ====== =================================== ========================================= ================== 8 35 99.6 39 GTAGGAAACGACCTGAATTAGAAAGGGATTACGAC # Left flank : GCAGGGCATGCTGCTTGAGGCGACTGGAGAATTTGATATTATCTGAGATCTCATTGCTGAGGTGAGAGAGAGTGTTCATGAATCTCTTCTGCAAATATTTTCTTCAGTCGCTGGGGTGGTCTCCTGAATAAAACTCCTTCTATGAGTTGGGTTCTCGGTCGGAAGAGATGGGGAACTGTATGCATCATTCGATGCTGGTTTCTGTCCACGGGTTGGTGTATTCTTTATCGGAGTGGGGCAGGAACCTCGGGCAGAAGCGGTTTAAACGGGAACCTCAGAGGTAAAAGAGGAATATTTGCTAACCTGTTGAAAAAGCGGTCTTTTTTATTTTTACCTGACCGGAGGTTCCCAGAAGTGGATATTATGACGGAATGATAACAACTTAATGATGGAGGAAAAGGAAAATGCAACAAAAATACTTCCAAAAAACACATTGCAGTGAGAGGTTCCCGGATTCACCCTCTGAAAACCGCTCCTGGCAAGGGTTTGAAAGGGGCGCA # Right flank : AATTCAACCACGAGGTTTATTTCTTTGTGGCTTTTGTGGGAAGTGATATGAAGGAAAGGGCTTATACCATTTACATTTTTATATTAACCAGATAACGCAACTGCGTGGAAATATTTTTTGGCGATTGCGAATGGATAAACAGGATGTAAAACGAGCATAACTTAATAGAAATGGTCTAATCATGCGAAAAAGGGCATTTTTTATAAAAGCGTAACTTCTTAAAGTTTTTTTGCCTTTATTCGCATGATTAGAGCTTTCCTTTGGCAAAAAGTTTTTCGCTGTTCCGTCTTTTGCTTTTCCCTGTCTCCCATCCCCCTGCCTTTACATTCGCCAATAGAAAGTGAAAATGCCATTGAGTAAGGTCACAACTTAATAGGAATGGTATTACACAGACTCCGGGCGAACATCGATAGCAAGGCAGGGCACTGCTTAAGGTGACTTGGGCGTTTTATATTATCTGGGGTCTAATCACGAAGATGATAATGTTTGAGGATCTCAGA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTAGGAAACGACCTGAATTAGAAAGGGATTACGAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:57.14%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-0.10,-2.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-41.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.27,0.78 Confidence: MEDIUM] # Array family : NA //