Array 1 948017-949509 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023294.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-4261 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 948017 29 100.0 32 ............................. TTTTGATACGTAGTATTCATTACGCCTCCTAG 948078 29 100.0 32 ............................. GCGAGGTCAATAAAAAATGGTGTGGCTTTACC 948139 29 100.0 32 ............................. CCGGCATCAGCGCCGATCCGTTCATAGTGCCC 948200 29 100.0 32 ............................. AAAAAACAGAAGAACGGCAAGCGGCACCTCAA 948261 29 100.0 32 ............................. CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC 948322 29 100.0 32 ............................. AACAGGAACAGGAAAAAAAAGATTTGTCCGGT 948383 29 100.0 32 ............................. CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT 948444 29 100.0 32 ............................. CGGAGGATGGAATATTTCCGAGGCTGGCGATT 948505 29 96.6 32 .............T............... ATGCCGGAACGCTGATGGCGTTTGACATGAGC 948566 29 100.0 32 ............................. AATTATTTCTGTGGCTGGGGTTTCGATTCGAT 948627 29 100.0 32 ............................. TGACGCTGGTCTATACCGGCAACGAACGCGAC 948688 29 100.0 32 ............................. TTGACGGTGACGTCAGTGCCGAAGGCGAAATA 948749 29 100.0 32 ............................. CCAGCTTACGCTATTTACGACGTTATTGAGCA 948810 29 93.1 32 .................A........T.. AAACGAAAGAGGCTATGCGGTTGTTTATCGGT 948871 29 100.0 32 ............................. CCCCGATAGCGACGCTTCTGTAGTCACTGGCA 948932 29 100.0 33 ............................. GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC 948994 29 96.6 32 .........................G... CGTCACTTTCTGACATTTTATTCAGTTCGTTA 949055 29 96.6 32 ..........T.................. TCATTTCTGGACGGGGCTGTGTGACGAATACG 949116 29 100.0 32 ............................. TGTCCAATTAACCCAAACTTTGCGCGCTTAAT 949177 29 93.1 32 A............T............... GGATATGTGAAGTTCAGGTAGCCCATTACGCA 949238 29 100.0 32 ............................. TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA 949299 29 100.0 32 ............................. CAGGTTATGCGCAAAAATTAATTCATATTATA 949360 29 96.6 32 .................A........... GACGAGTTCTGGAAATGGTTAGCTGATAAAGA 949421 29 100.0 32 ............................. CGTTCATCGGCAGCGTCACGCAATATGAAGAT 949482 28 82.8 0 ...............A.AA....-.G... | ========== ====== ====== ====== ============================= ================================= ================== 25 29 98.2 32 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GAAATCAAGCATCCCGTTGGGCGAGTTCGTGATATTGAGGCGCTGGATGAACTGTTAGCCACGTTGAGCGATGATAAACCGCGTGTGATTGCTTTGCAGCCCATTAGCCAGAAAGAAGACGCGACGCGTCTGTGTATTGAAACGTGTATTGCACGTAACTGGCGGCTGTCTATGCAAACGCATAAATATTTAAATATCGCCTGATGCATTACTAATCTTACAGACGGCCTGCCGATGCCGTCTGTGACTCATCCATTACCTTGCATTGTTTATTTTCTCTATGTGAATTTCGATGAGTGTATAAAAGCGCTGATAAATTTTTCCATAGCGATGCACGGATCACGCTATTTTGGTAAATTTAAAGAAAAAATCATTCTATGAACTTTTTTGCATCAAAATCAGCAAATTAGCTGTTCTTTAATAATTTAAATTGTTGCGATTATGTTGGTAGAATGTGGTGCTGACAAAAAGTAGTTTATAAACAATTATATCCGTTTAGT # Right flank : GTTGCATAATCATAATCTGTGTACCAGTAATGGCAGCTACAAACCTGTAAAGTAAAAAGGCCGCGTTTTCCCGGGGAGGCTTTTAGACAGGAGAAGGCCATGGCGTTAAGGATCAGGGTATTGCTCGAAAATCATAAGGGAGCTGGAGCGGATAAATCGTTGAAGGTCCGGCCAGGGTTAAGCCTGTTGGTCGAGGATGAGTCTACGTCTATCTTGTTCGATACCGGCCCTGATGGCAGTTTTATGCAAAACGCGTTGGCGATGGGGATCGACCTGTCCGATGTGTCTGCTGTGGTGCTTTCGCATGGTCATTACGATCATTGCGGCGGCGTGCCGTGGCTTCCTGATAGCAGTCGAATCATCTGCCATCCCGATATTGCACGTGAACGTTATGCAGCAATGACTTTTCTTGGTATTACCCGAAAAATAAAAAAATTGTCGTGTGAGGTGGACTATTCACGCTATCGAATGATGTACACGCGTGACCCCCTGCCGATTGG # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [70.0-63.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.65,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 965641-967599 **** Predicted by CRISPRDetect 2.4 *** >NZ_AP023294.1 Salmonella enterica subsp. enterica serovar 4,[5],12:i:- strain L-4261 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ========================================================================== ================== 965641 29 96.6 32 ............................T CCCACCGCGCTGATTAACGACGGACTGTTACA 965702 29 100.0 32 ............................. TGAGCAACGACAGTAAATAATTTTTCGTGCTG 965763 29 100.0 32 ............................. AACCGCTGGCGGGCTGATTGGTCTGCAACCAC 965824 29 100.0 32 ............................. CAACCAGGCTGGATCGTAACTCCTATCCCCTC 965885 29 100.0 32 ............................. AAAATGCAGGTGGGGTAACGAATGCGAGATTG 965946 29 100.0 32 ............................. CCATTATTCAACCCTCCAGGCTCGCGCCGGCT 966007 29 100.0 33 ............................. CCAGTGGGCGTAGCCAGCTCATCGCTATTTTGC 966069 29 100.0 32 ............................. CGTTGCGGATTATCGTTAAGACTGAAGGAAGT 966130 29 100.0 26 ............................. CGTCACTACCGAGACCGAGACCGAGA 966185 29 100.0 32 ............................. CCGCTGACGCACTGGATCAACCTGACGCAACG 966246 29 100.0 32 ............................. TTGCAGGGCGATATTGTTGTTGGTGAATGGGA 966307 29 100.0 32 ............................. CGTCGCGGAAAATTTCGCATTGACGATAAAGA 966368 29 100.0 32 ............................. TTACGTGTTTATTCATCTGTTGCATTAGATTC 966429 29 96.6 32 ............................T GAGGCGTACAGGCTGTTAGATGAGAAATTACC 966490 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 966551 29 100.0 32 ............................. ACGCCCCGAATGTGTTTGCCTCGCCCGCTGCC 966612 29 100.0 32 ............................. TGGATTATCTGTATTTTACGGAAGTGGGCGCG 966673 29 100.0 32 ............................. GTCGTTCATCAGGCACTACCGGCACTTTCTGG 966734 29 100.0 32 ............................. ATATTCGCCGCTTTCCATTTACCGAACGTAAC 966795 29 100.0 32 ............................. CCACGTTCGGCGATGTTGGCCCCATCGGTCCA 966856 29 100.0 33 ............................. AAACGGTAGTGTTTTAAAACCGTTTCGAGGTGC 966918 29 100.0 74 ............................. AATAAGGCGCGGTGCCACCCTCGGCTTTAATTGTGTTCCCCGCGCCGACGCGTTCCAGCGCACGTTACTCGATC 967021 29 100.0 32 ............................. AGCCGTTTCCGCTAAATACCCCCGCAGTGATT 967082 29 100.0 32 ............................. TTCTTGAATATGATTGCGGGTATATGTGGATA 967143 29 100.0 32 ............................. TCTGGTTATAACATCGCAGCAAAATCAAAAGA 967204 29 100.0 32 ............................. GCACTATTTCGAATGTCTCGACGCCAGATTTA 967265 29 100.0 32 ............................. AACGAATTGAGACTATTAGAGATTATTCGCCT 967326 29 100.0 32 ............................. GCAACCCATTAATTAACTAAGCAGTAATAAAC 967387 29 100.0 32 ............................. TGACGAGGTGCGAGCGATGGTATCAAGGCCTA 967448 29 96.6 32 .....T....................... GGTTAACCAGGGGTTTTTCCCCACTATTTCGC 967509 29 100.0 32 ............................. AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA 967570 29 96.6 0 A............................ | A [967596] ========== ====== ====== ====== ============================= ========================================================================== ================== 32 29 99.6 33 GTGTTCCCCGCGCCAGCGGGGATAAACCG # Left flank : GTGCTCGCTGCCGGTGAAATTGAACCACCTCAGCCTGCGCCGGATATGTTGCCGCCAGCAATACCGGAACCTGAATCACTGGGTGATAGCGGCCATCGGGGGCATGGTTGATGAGTATGGTGGTTGTGGTCACGGAAAACGTACCGCCGCGCCTGCGGGGACGTCTTGCCGTCTGGTTACTCGAGGTTCGTGCAGGTGTTTATGTTGGCGATACCTCGAAGCGTATTCGGGAAATGATTTGGCAACAGATCACACAGCTTGGCGGAGTCGGAAACGTAGTAATGGCCTGGGCAACAAATACTGAGTCTGGTTTTGAGTTCCAGACCTGGGGTGAAAACAGACGTATTCCGGTAGATTTGGATGGACTGCGTTTGGTTTCTTTTCTTCCTGTTGAAAATCAATAAGTTGAATGTTCTTTAATAATAAGGAATTGTTATCTTACCGTTGGTAGTTTGTTATGTAGTAAAAAAGGGCTTTTAGAACAAATATATAGTTTTAGT # Right flank : GTTTCACCAGCATATCAGGACGTTTTTTCCGCCTTCGCCAGCTCTTTTACCAACGGCAGCATTATCCGCACTACATCGCGGCTACGGCGCTCAATCCGCCCTGGCAGCGCCTTGTCAATATGCTGTTGATTATCAAGCCGTACGTCGTGCCAGCTATTACCGTTCGGGAAGGAGGCATTTTTCACGCGTTGCTGGTATCCGTCTTTTTTACCCAGATTCCAGTTCGTCGCCTCAACAGAAAGCACAGATATTCCCGCTTTATCGAAAACCTCCGCATCATTACAGCAACCCGTTCCTTTGGGGTAGGATGGATTGCGTCCCGGATTGGTGTTGGCGGCGATGCCATAACGGCGCGCAATCGCTAATGCCCGATCGCGGGTCAGTGTACGCACCGCTTCCGGCGTATTTTTCCCGCTATTAAAATAGAGCTTGTCGCCAACAATCAGGTTATCGAGATTAATGACCAGCAGCGTATTTTTCTTCTCAGCGTCACTCATTCG # Questionable array : NO Score: 6.15 # Score Detail : 1:0, 2:3, 3:0, 4:0.98, 5:0, 6:0.25, 7:-0.08, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCCAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCCAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [1-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [71.7-48.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //