Array 1 136608-136979 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH601051.1 Paenibacillus sp. Aloe-11 GW8_17, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 136608 32 100.0 37 ................................ CGGTGTGGGCCAGTGAAGGGGAGTGGAAAGGCATATC 136677 32 100.0 36 ................................ CTTGTACAGAACGTATGTTTGCTATATAATTTCTAC 136745 32 93.8 35 ...........T.......C............ CTGTGATGGTAGTAATCCCTAAAGTAAAGGCCAAA 136812 32 93.8 35 ...........T.......T............ CCTAAAGGGGGATAAGATGCAGGTGATGCAACTAT 136879 32 96.9 37 ...................C............ GGATTGCACGACGGTGCTTCCGTATGTGTTGTTAATA 136948 32 81.2 0 ..........AT.CA...AC............ | ========== ====== ====== ====== ================================ ===================================== ================== 6 32 94.3 36 GTCGCACTCTGCATGAGTGAGTGGATTGAAAT # Left flank : AAATTCCGTATTCGCGTCAATGTCATTTATCCTGGTGCCATTTCGACCAATATTGATGAAACAACGGAGAAATCCGAAAGGTTAAAGCAGATTACTATTCCCGTTCATTTTCCCGAAGGAGGGCAGCCGTTGGCGAATGGACCTGGCCAACCTGAGCAGGTAGCTGATTTGGTAACATTTCTGGCCTCTGATCATTCGCGCCACATTACGGGTGCACAAATTGTGATCGATGGAGCAGAATCCTTATTGTTTTAGAGTTAAAAGCATTCTCTATGATGGAAAAATGATTTATGGTATTCTAATTGTAACATTTTGGTTAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAGAGGATTAAAATCTGATTTCATCTATAAAAGTCAAAAGTAGATTCAAGCTTTTTTTGGCATCGTTTTTTTGAAAATGTACCGAATTGATATCTTATCTGGATCATTCCGGTACATCTTTG # Right flank : TTTCCAAGTACGCGGGTGAATCTCGACTATTTTGTGTTGCACTCTATGTGATTGTGTGTCCTCTTATTTGTAAGATATGCAAATTTTTTATTTCAAATAATGCAGACATAATATATTGACAGATGGTCAATTTTGGCGAGAAATAAAGTGTTAATTTTGGAATTATGGAATTTTATGTTAATAGTGGTTGTAGCTTGAAGCATACACCTACGATTACAAAAGCACTCTTTTTGTCATATAATCTAAATGCGAAAAATGAAACACAAGAACGAAGTAGGCGGAATGGTGCTGGTCAAGTGAGACGGTGGCGATGGGAAGCACTATCCGACTGCGTAGTGGCACAAAAAGTAACTATTAAGTTCAGCTTGCAGGAGACTGTAGCATTTTAACTAAACATAAATCGCCAAAAAGTGCCTCTGGATCACTCCAGAAGCGCTTTTTTGTTGAGCGTATTTTAAAGAAATCCAAAAATTTACGTTTTACATTAGGATATGACACAG # Questionable array : NO Score: 8.66 # Score Detail : 1:0, 2:3, 3:3, 4:0.71, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTGCATGAGTGAGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.12%AT] # Reference repeat match prediction: F [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 94% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-3.40,-2.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-9] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [66.7-55.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [10.05,0 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 621763-621464 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH601056.1 Paenibacillus sp. Aloe-11 GW8_22, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ =================================== ================== 621762 32 100.0 35 ................................ TATAACGGTGTGAATGATCGTTTGGATCGGATCAT 621695 32 100.0 35 ................................ GCTCGATGTCTGATAGCATGATGATCACCTCTGTG 621628 32 100.0 34 ................................ CTTTTCGGGGACGAAGAAGACCAAACGTTTTTTG 621562 32 100.0 34 ................................ TTCACGCTACGCATTGCCTTCTTTTCTTTCTTGC 621496 32 81.2 0 ......T....C...G.....AC....A.... | C [621472] ========== ====== ====== ====== ================================ =================================== ================== 5 32 96.2 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : AATCCTGTGGAAGCATTGTCTATTTATTTTTTGGAGTCGGTGGATATACATATCCATTGGGAATGGCGTGATGCTGGCAGTACAAGTGAAAAGGCTATTCAGTATAAAAGAGAAGCTCCTTTCATGACGTTGACTCAGGCTATTGAGAGGGCCGAAGGGGAGAGAAATGCCTGTACCTAAAATATTCTACGTATTATATTCCTAAGTATAAAGCAGGGATTGATTGGACCGAAGATAGGAATATCACACGGATATATAGTAGGTCAAATGTAGTATGGGTTGCGTTGTGTATAGATAGCAAAATATAATGAATAAAGCTGGTGCGAACTCCAAGCGCACATAAAAATCCCGGGTCCTTCGCACCTCGAAAATTGTCGAAAAGTATCGGATTGACTATCTATCCGCAAAAGTCAATAGCTGATCAAAGCTTAGTAGGCATCAGTTTTTGCGACAATGTATGAAATTGATATCATTAGGGTATGAATTACTGCATTTTCGCT # Right flank : CGCGAGCAATTGAAGATTTTACGACTGCTTAACGTTGTTACTCCAATTAAGGGAGTCCGACGCATTTTCGCCAAGTATAGATACAAATCTATTTAAGCTGGCTCTCTATGAAATCAGGAGAGCCTCTTTCGTCGTGTTTTTATAGACAGAAAAAGAGAGACTTATCCGTAGTGATAACTCTAGTAATAAAAAAAATTGAAGAAGTATCTTCCATTAGAACCAGAATTAATTTATGATAAGGATAGACATCCTAGAATTTTCCTGCGTTTATTTAATAGCTGAATTTTTTAACACATTTGAGAGGAGATTTCAGAATGAAAAGATTCAGAAAAGTGATTTCAGTTACATTAAGTTCAATGCTCCTGCTTTCTTTTGGAATGACTGCAAACGCGAGTGCGGGCACAGAGGAGAAGACGGATCAAGCGATTCAAGCGGCTTCCAATGTACAGCTAACAACGGATAAAGAAAGTGTTATAAAACAATTAACGCGTGCGGACAAG # Questionable array : NO Score: 8.87 # Score Detail : 1:0, 2:3, 3:3, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [7-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [56.7-68.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,10.05 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], // Array 1 66567-67057 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH601050.1 Paenibacillus sp. Aloe-11 GW8_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ====================================== ================== 66567 30 100.0 36 .............................. CGGTGTCGCCGTCCGGATCGCTGCGCAGGAATTGGA 66633 30 100.0 36 .............................. CTGTACTGAGATCGCTATTCCCAGCAGCAGCAGAAG 66699 30 100.0 36 .............................. TGCTGTCAGCAACTTGGCTATACGATTCTTTAAAGC 66765 30 100.0 36 .............................. AGAATTTGGGGTATTGTATACGCCGGACAAATCCGG 66831 30 100.0 35 .............................. TTGTCAGCAGCTACAGTTTCACTTGGGTACCAATC 66896 30 93.3 35 .......T..............G....... TGGTAATACAGATCCACTGGCTGCCGATTCTTGCC 66961 29 90.0 38 ....G...........-........T.... TATAAGTAATTTACCTTTTTTCATGTCCACGCCCTAGC 67028 30 83.3 0 ........G...T...A....C.G...... | ========== ====== ====== ====== ============================== ====================================== ================== 8 30 95.8 36 CTTTAACCACAACATGTGATGTATTGAAAT # Left flank : CATATCGTGCCACTGCGCAGTCGGATAGTGCTTCCCATCGCCACCGCCCCCGGATTTCTTGGATAAAGCCTATGATCAGGGTAGAAATCCGGGGACAAAAGCGACCGCTTCGCTTGTACAGCACTATTCCGCCTACTCCGTTTATATGTTCATTTTCGAGTTCGAATTATATAGCAAATATATTTACCATTATACCTCCAAGAAATCCATTACAATACAGACTAAAGGTCCATTTTGAGGACGGATTCCAATATTAAAAATAAAAATATCGTAGTCCTTGAAGTTGCTTGAAATTGAGAAGGTGGAGGGCTAAGGAAGAACTTTTTTTCCCAACCTCTAAATGGCATGATACAGGGAATTACCTAGAACCACAAGGGACTCAGACGTTTTTCTCTACATTCAAAGGGGAGGGGACTTATGGTTGGGAAAAAATTGCGAAACCCTTGTGGCTGTAGTAAAATAAGCACATTGTTAATACTGAAAAGCTTGATTTTGCTAGC # Right flank : TTGAAGGAAATGAAAGCGACAATGGTGAAAGTCCGATTTTTACAAAAACATAAAGATATATTTAAAAATTGGTTGTAGTGATGCTCTTTAATAAGTCTCTGTACTTAATAAATGTTTTTCGGTTATGCTAAAATAAGATTACTGCTGACTTGTTAGGAGGAAAGAATATGCATACGAATAGAGAAGAACTTCAACGAATATTAAAACAAGCAAATGAATTTGCCCGTAAGCAAGCAAAGGAAGCAGGAGCTTCTATTTACTATATTAAAAATGGCAAGCGTGTACGCGAAGATGCTAATGGACAGAAGTATGAAATCGTCTTCGATACTTTGGGAATTCGTAAAGAGTATGAATTCCATGAATAGTTCCACACCTGCGATGACGATTTTTGCTGGAACTAATGGTGCGGGAAAAAGTACAATCAGCTTACAAATGAGAGATTGGATCGGAACCATCATTGATCCTGATCAAATTGCCAAATAATTAAAGCCGGAGGACCC # Questionable array : NO Score: 6.05 # Score Detail : 1:0, 2:0, 3:3, 4:0.79, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCACAACATGTGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 2 68255-69211 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH601050.1 Paenibacillus sp. Aloe-11 GW8_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 68255 30 100.0 36 .............................. TTTTTTCTTGGAAGTCGGGAAACATGTCGTCCGTGA 68321 30 100.0 36 .............................. TTGGAAACGCATCACTGCCAAACCACAAAAAATCAT 68387 30 100.0 36 .............................. TAGGCAAACCCTAATGCCGTCAGCACTTCTAAAGAT 68453 30 100.0 36 .............................. TGCGTTTTTCTCCGTTTTTCTTGCGGTGATAGGTCT 68519 30 100.0 36 .............................. GTTGTGCCGCTATCTTTGTATTTAAACTCCAACTTT 68585 30 100.0 36 .............................. TCCAGTGTTATGGTAATAGTGTCAATCTGACCGTTG 68651 30 100.0 37 .............................. AAAGCAAATGTATATGTGGATGCCAGCCATTAGCACC 68718 30 100.0 36 .............................. ATATCTACTGGGCCGGTTGCTGTAATAGTGATCGCT 68784 30 100.0 37 .............................. CAGTCAGTGTTGAGTTTGGTATAGGGTCCGCACCATC 68851 30 100.0 36 .............................. TTTGCTCACCATCGAAATGACCAGGATAAGAAAGAA 68917 30 100.0 36 .............................. AAGAACTCAGCAGTATTAGGATCAGCTTGTTTTTGC 68983 30 100.0 36 .............................. CTTATGGGGCAAACGGTTGGCATCCTCATATTCACT 69049 30 96.7 37 ......................T....... TGGATGATGTGCTGCATTTCTTCCTAGATGTGAATGT 69116 30 96.7 36 ................A............. AAAGGTTGATACCTCCATTGATAGACAGGAGGGGTG 69182 30 96.7 0 ................A............. | ========== ====== ====== ====== ============================== ===================================== ================== 15 30 99.3 36 CTTTAACCACAACATGTGATGTATTGAAAT # Left flank : AGTTGCTTCACGTGTAGAGCAAGGAGGGCATTGGATTGGCTTTATTTCAAGAATGAATCGGATAGTGTACATCCTAGCGATGTTCCATTGTCCGATTTTGCTTTGTAACAGGGCAAAAGTTGAGTAATTGTGTGCTTCTCATTTTTTGTGTAAGCAAAGGTGAAAATTATCTCGATACTGGGATGCTATAGTTATAGTCTAATTTTCAGCAATCCTATAACTAAAATTATAAATTTTAATAAATTAAGATATTTCATTAAGCGCTGTAGGTAATTTTTACGTTTATCCTTAGAGACCATTTCGACATAGCCGAAGGCCTAAATTTTTTCCCAACCTCTTAAAAGGTATGAGACAGGGAATTACTTAGAGCCACAAGGGATTTAGACGTTTTTTTCTACAATCAGAGGGTAGGGGCCAACGGTTGGGAAAAAATTGCGAAACCCTTGTGGCTGTAGTAAAATAAGCACATTGTTAAAACTGAAAAGCTTGATTCTACTAGT # Right flank : TAGCCATTCTACCAGCATAATCATTTGCTTGATCGCCCTTGTGGAAAGAAGACGGAACATTTAAAAGAGTCAATAAAAAGTAGGGAGGATAGTTTTGGAGTACAGTGAATTGATAGAACGTTTTGAAATGGGAGAAGAGTTTCAGTTCTACTATAAAAACGATAGCTACTGGATTAGCCAGAATGAAGAAGAATACTTTCTTACTCGGGAAAGAGACAGTTTTTCGCAGTCGTTTGAATCAGCACGAGAGCTGTTTGCTAAGGGGAAGATTGACGATAAGACTATTTTAGAATTGTGGGATAACATAGAAATTTGAAAAAGTATATTTTGAGCTTGCTCCTTTAACAATAAAAATGGGAGTGAGCTTTTTTGTATAGTATGTTAAAAAGAAGGTTGTACTCGTAGAAAATCAAGGCAAGGCGTTTGTCTTGAATGTTTCAGGGAAAGTAGTAGTTCCTTCAAGTAACGAGGTAGTTGTTCCAACTGACTGGACCCGTATG # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:0, 3:3, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCACAACATGTGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-2.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [65.0-56.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 3 70219-70510 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH601050.1 Paenibacillus sp. Aloe-11 GW8_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ==================================== ================== 70219 30 100.0 35 .............................. ATCTGTATAAAAAACCACGAAAAAACTCCAGCACA 70284 30 100.0 36 .............................. AGTTAAAAAGGCTCATGGTGGTGCTCGTGAGAATGC 70350 30 100.0 35 .............................. GGAGTACATAAGGTTGTCCAATAGTCACCCACCGG 70415 30 100.0 36 .............................. TGATCGAACAATACATTACAACCATTGCACTGTCCG 70481 30 93.3 0 .........C........G........... | ========== ====== ====== ====== ============================== ==================================== ================== 5 30 98.7 36 CTTTAACCATAACATGAGATGTATTGAAAT # Left flank : AGGCGTTGAAATAAAGGCATCAGTTATCGCTTATGTTTTGATAGATACGGTGATAGTTATCTTCATGTATTCTTAACTTACTGATCAATGATGTTTCATTAGATGTGGTCAACTTTAGTGGCTGCATCTTTTTTGGTAAGACTCACGAACAAGATGAAAAGAAACATCCAATGTTAAGGTTTTAGTCTAGTTTGCAGTAGTTTTAAACTAGAATTAAAAATTTCAATACACCAAGTGTTTAGTTGAAATCATATTTTTTCTTCGATACACATTTTACATTATACTCTTGGGCAAGGGAACTCAACATAGACCAAAGGTCTATTTTTTTCCCAACCTCATAGCTGGTGTGAAAGAGTGAATTCCTTAGAACCACAAGGGATATAACCGTTTTTCTATATATTTGGCAAGAAGGGACTTACGGCTGGGGAAAAATTGCGAAACCCTTGGTGCTGTAGTAGAATAAGCACATTGTTAAATCTCAAAAGCTTGATTTTACTAGG # Right flank : TTACGTAATGGGGCGGCGACACCACGTATTTAACGACTTTAACCTCAACATAAAATATACCAAGTCCTAGCCAACCAATCGGGCAGAATTGTTCTGGAGAAGCGTAAGCGGTTGCCTTTATCCTCGAATGTTAACCTTTGAAGGGTTTATACAATCCTATAAAATTCGGGGATAACAGCAATCGAAAGAACAATCTGCACGTGTAGCGGTTCGGGTATCATCGGAGCCGATTTTAAATAGAATTAAAATGATAGTTTACAAATCATGGAGCGAGGTCTATACTCTATATCAGATTAGGAGGTGAACGTATTGTATTATGAAATTCATATAACAACGTTAATGAAACAATCATCTCATCATCTGGAGATACCGGAGCGTATTGGAGCGTGGATTGGTCGGGCTGGGTTGAAGGATGAAGCGTTGAAGCAGACGCACTACGACAAGGACTACAAGCACTATACATTTGGATCGCCTTTCCCGCGTGAAAAGGAGGGGGTATA # Questionable array : NO Score: 6.00 # Score Detail : 1:0, 2:0, 3:3, 4:0.94, 5:0, 6:0.25, 7:0.01, 8:0.8, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCATAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:73.33%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: NA [0.00,0.00] Score: 0/0.37 # Array degeneracy analysis prediction: F [0-2] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [63.3-58.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0 Confidence: HIGH] # Array family : NA // Array 4 80214-81963 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH601050.1 Paenibacillus sp. Aloe-11 GW8_16, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================== ===================================== ================== 80214 30 100.0 36 .............................. TGCGCCTCCTGTGTATCGTATTTAGACAATCCATAC 80280 30 100.0 36 .............................. TTAATATTGTCCATCTAAGCTACCCCCACGGAAAAA 80346 30 100.0 34 .............................. CGGGCTTGGTCCAGCGGGCTCACTGTCGGTTTTG 80410 30 100.0 36 .............................. TGTTTTCCAATTGACTCTTCACAAGCCGTAATTCGG 80476 30 100.0 36 .............................. GATTTTGCGATGTCTATCTTGACGTGCCCCATGTTA 80542 30 100.0 36 .............................. GATTTTGCGATGTCTATCTTGACGTGCCCCATGTTA 80608 30 100.0 36 .............................. GATTTTGCGATGTCTATCTTGACGTGCCCCATGTTA 80674 30 100.0 36 .............................. GCAGCGAAATCAAAAAAGTTGCGAACATAAGTATAT 80740 30 100.0 37 .............................. CGGTATCCAGCCCCGGCCCTAAGAACTGGCTTTTGGG 80807 30 100.0 37 .............................. TACAAATATCTATCAAATAGGGGGAAATGAGAATTGC 80874 30 100.0 36 .............................. TTTTGTGGTGTTGCTAAGATCGCTTTCCGCTCATCT 80940 30 100.0 37 .............................. TGGTCAGCCCAGCTTCTGCCTTTGCCAACAGATTGCG 81007 30 100.0 37 .............................. TCAAATATTCCTTTAGGCGTTACGTCTGAACGATAAA 81074 30 100.0 37 .............................. TCGTCCAAGTAATCCCTAGTTTCGGTCTTAGTACCGT 81141 30 100.0 36 .............................. GTTTCTGCAACCTCCCACGAATCTGGGCAATCTCCC 81207 30 100.0 36 .............................. CATTAATCTACTCCTTTTCTACAATCAAAAATTTTG 81273 30 100.0 36 .............................. AACTCTCCAGGCACTTTAGGAGTCAGCGTATCTTGC 81339 30 100.0 36 .............................. TATAAGCAGCCTCTGCCCTCTCTCGGGGGCTGGCGT 81405 30 100.0 36 .............................. GAAATTTGCTGGAGTCAGACCTAAAAGAGATACGCT 81471 30 100.0 36 .............................. ATTAGTACGTTGTCCGCATGCCCCAGCGCGATTAAA 81537 30 100.0 36 .............................. TATGACTTCTCGACTCCCGTATGCAAGAGAATCCTT 81603 30 100.0 36 .............................. GCATATGCAACTGCCTCAACGCCAACCTTGTGTAAA 81669 30 100.0 37 .............................. TTCGCCGCAGCACGGACAAGCCCGTTCCGGGGGAGCC 81736 30 96.7 37 ........G..................... ATTTTAAGTGAGTGGTACAAGCTGTTCACGCAGCGTA 81803 30 100.0 35 .............................. TACAATGCGGCAGATGGATCGGCTACGGCTTTGGC 81868 30 100.0 36 .............................. AAGCGGCGCGAAGACGCTATAAAACGGATGCAGCAA 81934 30 90.0 0 .......T.......AG............. | ========== ====== ====== ====== ============================== ===================================== ================== 27 30 99.5 36 CTTTAACCACAACATGAGATGTATTGAAAT # Left flank : GCCTTTTGTTCCCTTTTTAGAAAAGGAAAAGAGGTAGAGGATATGGCGAAAAATTATAACTATGTCATTCTGGTGTATGACATCGGAGAAAAGCGAGTGGGTAAGGTATTTAAAATATGTAAAAAGTATCTCGTTCATTTTCAGAAATCCGTATTTCGAGGTGAAATTACCCCCGCTAATTTAATTCAGCTACGCGCTGAGTTAAAAAAGGTTATTGATGAAGGGAACGACTTTGTTGCTGTTTTTAAGATGACAGGTGATTATGTTTTCGACGAGGAAATCATCGGTGCCCGCATGAATGATTCGGAGTCCTTATTGCTGTAATTTTCCCAACCTCCTTAGTAGACAGATAGCCGTTACTTCTTACAGCGCCAAGGGTTAACAGGCATTTTCTGTGCCATTAGCTGCATCCGTCTTCCGGCTGGGAAAAAATTGCGAAACCCTTGGGGCTGTAGTAAACTAAGCACATTGCTGAAATTAAAAAGCTTGATTTTGCTAGC # Right flank : TTTATTATCGGGCATGCACAGGGGATCGGCATTAGCACTTGCTGAAGAAGATTTTTTCCTCCCCCTAACACAAGATGTAATCAACTTAATATCAACATACTTTTCCCTATATTATACTGAAAGAGTTTACAATCCAATCTTAGGAATAAGGTGTTATGATACCTGGGACATGCTTTATGCAAAAGATCAAGCATGTCGAATCATGAGCTGCGGCACAGGACCGTCAATAAAGGAGAGAACGATGTTTGTTATACGGGGAACACAAAAACTGCTGAAGGAATGGGATACCGAGCCACTTCACGTTGATATTTATCCGCCTTTAAATAGTTGGCATGCCAGCTTGTTTTTACTGAATCGGAGAAAAAATATTGTGTTTATGCATGATGCAACCCGCTTTAGCATTACGCTGTTTGGCATTAAAAAATCGCAGTACAAAAATCTGCCGACTCTTTTTATTCAAGCCCTGAAGGAATTCATGATCAGCGAAGGCTTTGATGAGC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTTTAACCACAACATGAGATGTATTGAAAT # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:70.00%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [0.00,-1.10] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [60.0-55.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.91,0.37 Confidence: HIGH] # Array family : NA // Array 1 21162-20659 **** Predicted by CRISPRDetect 2.4 *** >NZ_JH601080.1 Paenibacillus sp. Aloe-11 GW8_46, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================ ===================================== ================== 21161 32 100.0 36 ................................ AGTTTCAATGTTTTACTCTGAGTAGCAGCTGCTGTA 21093 32 100.0 35 ................................ CCAAATGACAAGAGCAATTGCCCCAGCCAGCAAAG 21026 32 96.9 34 .............C.................. ACCAATGTAATGAAATTGTAATAACTTATACAAA 20960 32 96.9 34 .............C.................. TCGATCCCCATCGGAATCCCTTGACTGTTCGCAG 20894 32 96.9 37 .............C.................. CTTTATGATGGAGTACGAGACAGCGGATGTCTGCAAA 20825 32 100.0 36 ................................ CGGGACCCGGTCCCATGCAGAAGTCAAAAGGGCTTG 20757 32 100.0 35 ................................ TCCGTCTCGCCGGATGAGTTTTTTGCATCAGCCAA 20690 32 96.9 0 .............C.................. | ========== ====== ====== ====== ================================ ===================================== ================== 8 32 98.4 35 GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Left flank : GACAGCCGCAAGCAGGTATTCGATTGCCGTCTGGAAACGACGGATGGCCTCTTTTGCTTCACACTTCAAGAGCTGCCGCGTGAGACGGCCGAGGCAATTGTACGTTATAGCGGAGAGCTGAACGTATTTCGTTTTGTAACGCCGGAGGATAAATCCATCGTGAAGCATTGGTATTACGTAACCCCGGAAAGCGTGAAATATAATGATCAGACAGGTGAGCTTACGCTCGAAGCTGATTCTAAGATTGAATATCATCCCGAGGAGTATTGGGGAGATTAACACTATTTTATATTGAGTTTTTGAAGTGGCTGTCCAAGTAAGGTGCGAATGTGAAGCTCACATAAAAACCCCGGGTCCTTCGCACCTCGAAATTTGTCGAAAAGGCTTGGAGATGGTGTTGGCGATAAAAGTCAACGCTTGATCCAGCCCTTTTCGGCATCGTTTATTACGAGAATGTGTGAGATTGATACCATTGGGGTATGAATCTCTCCATTTTCGGT # Right flank : AGCACAGAATCTAATCCCCAACGAAACATGCGTTGATGGGTTGTCACAATGTATACAGCAACCCTCTTTGGCTACCTTCTTTTTCCTGTCTCCTGATCGTGGAACAAGATGTTCCCTCCCTAATAAATAAATTAAGCTACAAAGTGATTCAGGGAAAAAACAAAAACACAAGCACATGCGCTTGTGTTTTTGACTTGACTATCTTGTTATTCTTGAATTTTTCTTGCGATTTCCATCAATTTGTCAAGAGTGGAATTGAAAGAAGAAACAGTATAGAAGTGGTCTTTTGTAATCAGATGAACAACCTTTCTTTCTTGCCCGTCAACATAAACAGCAGTATGGTCGTTGATTTTAGTCGACTCAACCTTTTCCCCTTTATAGGAGTCTTTCAAACTATTAATAGTAACCTGTTCATCCATTTGGGACTCGGTTTGAATGACCATAATTTCAGTACCATCATTTCCACGATATGACTGTCTGATGATCAGTCCATTCTCGCC # Questionable array : NO Score: 9.16 # Score Detail : 1:0, 2:3, 3:3, 4:0.92, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.98, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTCGCACTCTATATGAGTGCGTGGATTGAAAT # Alternate repeat : GTCGCACTCTATACGAGTGCGTGGATTGAAAT # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: R Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:56.25%AT] # Reference repeat match prediction: R [matched GTCGCACTCTACATGAGTGCGTGGATTGAAAT with 97% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.60,-3.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [1-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [56.7-61.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,9.78 Confidence: HIGH] # Array family : I-C [Matched known repeat from this family], //