Array 1 4622-4769 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRJF01000075.1 Pseudomonas aeruginosa isolate 135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================ ================== 4622 28 100.0 32 ............................ GAAGCGACTTAGCACAACCTCCTCCAAGACTT 4682 28 100.0 32 ............................ ATCCGGTTTGCGTAGACGCGGTTGGCGATGCG 4742 28 96.4 0 ...........................G | ========== ====== ====== ====== ============================ ================================ ================== 3 28 98.8 32 GTTCACTGCCGTGTAGGCAGCTAAGAAA # Left flank : ACATGTGTCCGCGTAGCGCCACCCTGTACGTGGACACCCATGCACTCCCCGTGCACTTGTTCGACAACGCGAAAGGGCGCTTGAGGTCGGCAATCAATGTCCTGGCCATGACCCGTTTGCTCGATGAGAAAGAAGAGCCCGGCGGCACCCTGGCCTACATCAACGGTGCGTTGCTGTCGCTGCTCAGCGATGCCTTGTCCGAAATCGAGGCGGGCCACCCTAGCCTGTAGCGCCGCTCCCCGGCGCGACGCCCTCGGCCTGGCCGGGGGCGTCGCGGCATCGCCCATCACAAGACCTCTCGCCCTCGAACGGCGCGGTTGACCGACGTCCCGGCCCTCGCGAAACGGCCTCCAATTGCCCGAAGCTTCCGATCCTTTTTTCGGACGATTTCTTACGCCCTTATAAATCAGTAAGTTACGAGACCTCGAAAAAAGAGGGTCTCTGGCAGGAAAGACTCGGTATTTCTTTTTCCTTCAAATGGTTATAGGTTTTCGGAGCTA # Right flank : GTCGCGAGCGATATAGTCCCGTAGGGCGGATAACGCCACGGGCGTTATCCGCCGATGTCACGGAAAGCGGCGGATAACCGCAAGCGGTTATTCGCCCTACGGATCAGGACTTCGGAATGAACTCTTCTCTCAGGCTCATAGCGTCTCTCGTGGTCTTTCCCCGGCAACTCCGCACACCTGTCAGCCATGTCTCCGGTCCGTACAGACGCTTGCAAAAGGGACTGGCCTGGGAGGGCGAAACGAGAAGCCGAGGCAGGCAAGGAAATCAGCTTGCCCAGCACATTCAGACTCAAGACCACGAGGGCAGAAAACTGCCAGCCTCAGGCCGGCAACAACGGCCGACAGGCTTCGACGAAGCGCCGGCAGGCACCCGCACATTCGCGCTCCAGCGGCTCGTCGCCATCGCAACGCGATGCGCATGCCAGGGCATAGCGCGCCGCCAGCTCGCAGGCGGCCGGCGCCCATGGGCTGCGGCGCTCCAGCAGCAGGGCAGCGAGGCG # Questionable array : NO Score: 5.30 # Score Detail : 1:0, 2:3, 3:0, 4:0.94, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:0.69, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTGTAGGCAGCTAAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTTCACTGCCGTGTAGGCAGCTAAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [60.0-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 8280-9286 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRJF01000119.1 Pseudomonas aeruginosa isolate 135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 8280 29 100.0 33 ............................. TTCGGCATTGTGCGCGGTAGCCACGTACCCTGG 8342 29 100.0 32 ............................. CCGAACTGATTGCCGCTGGCCAGGTCCTGGTC 8403 29 100.0 32 ............................. TTGCCTGAGTTCCGCAGCGCGGCGATCAGCGC 8464 29 100.0 32 ............................. GACTTGGCCGGCTTGAAGAGCTACCTGGGCCA 8525 29 100.0 32 ............................. CCGTTGATCAGCAGGCCGGTGTTAGGCCCCAT 8586 29 100.0 32 ............................. ACCTGAAGCGCGAAATCATCCTGTCTGACGTG 8647 29 100.0 32 ............................. GCGTGACGAATTGGCCCGACAGTTCAACAGCG 8708 29 100.0 32 ............................. ACATAGCGAGACCTTGGCCGATCAACGGCATC 8769 29 100.0 32 ............................. CAGATCGAGAATGCCCAGAAGGGCATTGGGCG 8830 29 100.0 32 ............................. CGTGAAGCAGGCGGACCAGATCATGACCGACC 8891 29 100.0 32 ............................. CAGGCGCGCGATTCCGTGGCTGGACTCGGTGA 8952 29 100.0 33 ............................. GTCACGGTGAACGGCAAGGGCCTGGTCACCGGC 9014 29 100.0 32 ............................. CCGCCATGGCCGAGCGTTCGAGGCGCACCGAG 9075 29 100.0 32 ............................. AACCATGCTGGCAGTTCTCTCGACCAGCAGGG 9136 29 100.0 32 ............................. AACGCGGCGCGCGAACGCCCATCTTCCAGAAG 9197 29 89.7 32 ..............C..........G.T. GTATCGACATCGATGGTGACCAGGCTGGTCCA 9258 28 79.3 0 A..........A..C..-.....A....T | C [9262] ========== ====== ====== ====== ============================= ================================= ================== 17 29 98.2 32 GTGTTCCCCACGGGTGTGGGGATGAACCG # Left flank : GGCATCGTTGTACAGGGCGACGAATTCCGCGCCCCAGAACAGCACGATCTGCGCCTTGGCCGGCAGCAGCGTGGCCATCGTCGTCTTCAGGCTCGCCGACCAGGCGTCCGGCGGGCCGAGGGGCGAACTGGCCGCGTCGAGGCTGAGCAACAGTTTCCCGACCGCTCCTCCGTTGGCCAGGAAGGCCGGTGGATGGTCGAGGGTGTTCGGGTCCGGTTCGATGGTGAAAGGCTGTGCCATGTCTGCGGAGTCTTGCTCGGTTCCGGGTGAGGTGGTGGGTCGCATGGAATATAGGAGGGCGGTGGGTGCGCTTGCGTTCAATCAGCTTGGGGGACCGCGGGATTTCGATGCGGGTAGGTTTCGACTGGTCCCGAGGGAGCTGCCGGATTAGGCTGTGGGATGAGTACGGCCCTCATTTCCGGGAGCGGCGCGAGGGCCGCTTGGCCCGGTGGAATTTTGTTGTTGTTTTTCTTTTTTTAAAACAATGGGATACGGTAAGG # Right flank : TGTCTACGCTCCTGCGGTTCGCCCCACCGCGCGGTATTTCCCACGGTGGGGCGAACCGCGCGGCACTACGACCAGTGGCGTGATCACCAGTGTCAGCCGCCAGTTGCGGAGACGCGGATCGCCCACCGTCCGGCAAGATCCTCTTTCAGGGCATGGAGTTTCCAACCAACCTGGTTCACGTCGCTGGGGATGCAGGCTTCGCTCAGCACGAATAACTGACGGCGCAGGCATTGGGCGGAGGCTGCCTGGATACCTTGCCCTTACCGGTCTCGAAGAAGGCTTCCAGCCCCCTGTGGCGGAAGGAAATAGATTGTGAACAGGCGGCAAGTGAAGGTTGTTAGAGAGTTAGCGGAATGTCCGACGTTCGCTGTTGCACCATGGAGTTCCTGCTAATTTGGACAGGGTGGTCGGTCCGGTCCATATCCCTCCTGCGCTCCTTCGCTTGCTAAACGGGGGCGAACAGGCGCATCCCTCGCTGGCTGCTCCTTGACGAGCGTCAT # Questionable array : NO Score: 6.17 # Score Detail : 1:0, 2:3, 3:0, 4:0.91, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACGGGTGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [4,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACGGGTGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-10] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [63.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 18459-19892 **** Predicted by CRISPRDetect 2.4 *** >NZ_FRJF01000119.1 Pseudomonas aeruginosa isolate 135, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 18459 29 100.0 32 ............................. GCCCTCGCTCAGCCGTCGACCGCGTCAACGCA 18520 29 100.0 32 ............................. GCGTGTCGGCTACCTGCTTGCTTCTTGGGTGG 18581 29 100.0 32 ............................. GCGTATCAGCGCAGCTCGATGTCGGACGACGA 18642 29 100.0 32 ............................. GACCAGGTCACCGCAGCCTATGAGGGGGAAAT 18703 29 100.0 32 ............................. GCCTCGCTGGATGACTTCGTCCGCACCATGAT 18764 29 100.0 32 ............................. TTGGCGGCTTGGTAGACGATCCCCCATCCCCC 18825 29 100.0 32 ............................. CAAGTACTCGGAAACTAGGAATCCATGGCTAC 18886 29 100.0 32 ............................. TTCTGTTCCCCGACCGCCGTTTGACGGTCGGG 18947 29 100.0 32 ............................. TGCTTGGCCGGCACGGTATCGGCGCAGCCGCG 19008 29 100.0 32 ............................. ATTACGAGCAGAAGCGTATAGCGTGTGCAGCA 19069 29 100.0 33 ............................. CACAGAATGCGCTCGCTTTTACTGAGCAGTGGT A [19091] 19132 29 100.0 32 ............................. TCGAATGGCAGCCAGTCGGGCGAGGGGCCGCC 19193 29 100.0 32 ............................. AGGTGATGCTCAACGACGATAAGCCCGTGATG 19254 29 100.0 32 ............................. GCGGTTTCATCACCAGCGCTACTGTCGGCGAG 19315 29 100.0 32 ............................. ATGCGAGCCTGGGCCGGACCATCCATGTGCTC 19376 29 100.0 32 ............................. TAAAAGGTGCAACACCCCTTCCTAGGCCTGTG 19437 29 100.0 32 ............................. ACGGTGATTGCGTGCCGTTCCATGACCGGAAA 19498 29 100.0 32 ............................. TCCGCGCGCGGAGTACACCTGACGGACCTGGC 19559 29 100.0 32 ............................. TACACAGCCGGGGACTCTGCCGCGAATCGTCA 19620 29 100.0 32 ............................. GGACGATGTCTCGCGTAGCGATCTCGCTCGTC 19681 29 96.6 32 .........................G... CCAACAGGTAGCCAACGCGCCTGGCGATGGTC 19742 29 100.0 32 ............................. AACGCCCTTTCCAACTCATCAGCGCCAGCAGG 19803 29 100.0 32 ............................. GCGAACCAGGTGCGCTACGGCGACATCGTCCG 19864 29 89.7 0 .G..........G..A............. | ========== ====== ====== ====== ============================= ================================= ================== 24 29 99.4 32 GTGTTCCCCACATGCGTGGGGATGAACCG # Left flank : TGGCCCGCATCATTCCCACCATCGAAGAGGTACTGGCCGCCGGCGGCGTCGAGCCTCCCAGCGCACCGCCCGAGTCGGTGCCGCCAGCCATTCCCAACCCGGAGGGAATCGGCGACCTCGGTCACAGGACGCAAGGGTGAGCTTCCTGGCCGTGGTGGTGGAAAACGTCCCGCCGCGCTTGCGTGGACGTCTGGCTATCTGGCTACTGGAAGTCCGCGCGGGCGTCTATATCGGCGATGTATCGCGGCGTACCCGGGAAATGATCTGGCAGCAGCTGAGCGAGGGCTACGAGGAGGGCAACGTGGTAATGGCCTGGGCCAGCGCCAACGAATCCGGCTACGAGTTCCAGACCCTGGGTGTTAACCGTCGACATCCAGTGTTGTTCGACGGGCTGCAATTGGTGGCATTCCAGCCTCTGGATCGGACCACGGAATAGAGGATGAGGCGGTAGATTTTTCGAGGTGTTTTTTCTTCTTTAAAAACAATGTTGTACGGTAAGT # Right flank : GTGGAAGTACGCTCGCGCAGCGAGGATGCGATATATGCATGGGGCGAGTCGTTCACTTGAAAAGCCGACATTCCTGGCTGTCCTGTATTTCCCCCTTGGCATGGATAGAGCAGCCCCATAGGGCGAACGACGCCACCGGCGTCATTCGCCATGGCCGGGTCAACCGGAACGTCGATCGGCTACCAGGCGCTGCTGCAGGCGCGTCAGGAAGGCCACTTCGAAGGCGGTCTTCTGCATCGGTGTGGGCAGGCTGTCGCGGCCGAAGGCGAAGGCGGTCCAGAGCTGGCCTTCGATCTGGTCGGCAAGCCAGTTCTCGGCCTGGCGGACACCCTTGTCGATGGCGGGTTGGGCGGGAACCGGCCAGAGCAGGGAGAGGCCGGGTTGGCGGTCGGCGGGGGGAATCTCGACCATCAGGTCCTTGTAGCGTTCGATGATTGCGTCGACGTGGGTCTTTTCCTTTTCATCCTTCGTCATGCTGGGTACTCCGTTTCTGAGAGTCA # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCACATGCGTGGGGATGAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [5,6] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCACATGCGTGGGGATGAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-11.20,-10.60] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-4] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [65.0-45.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.55,0.37 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //