Array 1 17527-22095 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWEP010000075.1 Bacteroides faecis strain jmh53 NODE_75_covk_39.622159_covr_92.57_cutoff_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =============================================== ============================== ================== 17527 47 100.0 30 ............................................... AGTATTCAGGACCGGGGACCGGAAAGTGCG 17604 47 100.0 30 ............................................... TATTTCCCTACCGTTTGCCTGCTTGACATC 17681 47 100.0 30 ............................................... TACTCCCTTTATAATTATCTGCTGTAGATG 17758 47 100.0 29 ............................................... GATGCAAAAGCGGGAAGGAACCACTTCCG 17834 47 100.0 29 ............................................... CGGGTGCAGATGGCAAACCGGGAGAGGAT 17910 47 100.0 30 ............................................... GCTAACAAGTGAAGTATTAGACTTAATCAT 17987 47 100.0 30 ............................................... AGAAAGACCTCACGTATATAAAAGTTTTAT 18064 47 100.0 30 ............................................... GCGGCTGCACCGTTGTTAAATGATCCCTGC 18141 47 100.0 29 ............................................... TTGTTAATTGTTATCTTTTTGATTACACT 18217 47 100.0 30 ............................................... ATAAGTCCATCTCATTGTTAGATCACACAT 18294 47 100.0 30 ............................................... TATCCATTGATTTGGAGTTACTTTCATGGT 18371 47 100.0 29 ............................................... ATCTTTCCCTGCTTAGGCGTGGTAAACAA 18447 47 100.0 30 ............................................... TTAGCCGTAGACAAAGCATTCTGAATGCCA 18524 47 100.0 29 ............................................... GCAAAGAGACGAGGTAATTATAGTGCTAA 18600 47 100.0 30 ............................................... AGCAACGAGACGAGGAAACTATAGTGCTAA 18677 47 100.0 30 ............................................... AAAAAAGCAATCAATCAGATGGAAAAATTA 18754 47 100.0 29 ............................................... GTCTTCGCCTACTATAACATGAGAATAGG 18830 47 100.0 29 ............................................... TCAGACTCTTGGCATTGCCACAAAAAGCG 18906 47 100.0 30 ............................................... TGCAAGTGCTGAAACAGCCAAAACATTAGC 18983 47 100.0 29 ............................................... GAGCGGTTAACCAAGAAAGAGTTTTCATA 19059 47 100.0 29 ............................................... ATCCTTAGCATGAAGAAGCATAGAGATAT 19135 47 100.0 29 ............................................... AATATGATCTAGGGGTGCTAGACCAAATC 19211 47 100.0 29 ............................................... TTAGAATCGACGTTAACGCCATCAAAGAA 19287 47 100.0 30 ............................................... TTTCCAAAGAAGATCGCAAGGAACCGCGTA 19364 47 100.0 30 ............................................... AATGAGTAATCTAGAGTCTAAATGGACGTA 19441 47 100.0 29 ............................................... AGCAGAAGCCGGAGAAGAAGATCCAGCGT 19517 47 100.0 30 ............................................... ACCTTCACCGACAGTTTCTATGCAAAACTT 19594 47 100.0 30 ............................................... TACAACATGCTGAACAGAATCGCAGTAGCA 19671 47 100.0 30 ............................................... CAAATTACCTATGATGTATGCTAAGACAGG 19748 47 100.0 29 ............................................... AGCATAATCACGAGTTCGATAACCTCTAA 19824 47 100.0 30 ............................................... AGAAGCAAGAGAAGATCCAAAAAGATTTCC 19901 47 100.0 30 ............................................... GAGCAGCTCAAGAAGAACAGGCAAAAGTGC 19978 47 100.0 30 ............................................... CAGACAACAACTAGTTCAGTTGACAGTACA 20055 47 100.0 30 ............................................... TCAAGGCAATAAACTAGGCGGAATGCTCTT 20132 47 100.0 30 ............................................... CGCTTCTTCCGAAGTAAGCGCGAAGAATGT 20209 47 100.0 30 ............................................... CTCCCATTGCGGCAACCATAGCGGCAATAA 20286 47 100.0 30 ............................................... ATATTGTTTCTGATGGCGTTCATGAATTGC 20363 47 100.0 29 ............................................... TTCAACAGAATAGAAAGGAGGTTACTATG 20439 47 100.0 30 ............................................... GGAATGATCCCGGTAACCGTTGGAAAAGGT 20516 47 100.0 30 ............................................... TTTAATGAAGCATGGAGACGTAGCGACAGA 20593 47 100.0 29 ............................................... AAAAGGCAACGAAAGACAAATCCTAAGGA 20669 47 100.0 29 ............................................... ATTACGTCTCTGATCTGATCAAGTAGTTT 20745 47 100.0 30 ............................................... TCAAGACCTTATACAAGAACAGATGGTCGG 20822 47 100.0 29 ............................................... AATAATCAGTGGTGGTCTAGGACTACTAG 20898 47 100.0 30 ............................................... TTGTGAACGTTGAATTCGATAGAAACATAA 20975 47 100.0 30 ............................................... AAAAAGAGGAGGAATAAACAATGACAGTCA 21052 47 100.0 29 ............................................... ATATTAGATGAAGGTGAACCACTAACCGA 21128 47 100.0 29 ............................................... AAGATGTATCCGACAAATAACACTGACGT 21204 47 100.0 30 ............................................... CAAAAACAAACATCTCAACATCAGCCTTAT 21281 47 100.0 30 ............................................... GGATTGAGCGTAGGACTCATGTACGGAGGC 21358 47 100.0 30 ............................................... ATGTCAACGAAAAAACAATAAACTATGTAT 21435 47 100.0 30 ............................................... GCGAACACTACATGCGAAAAGGGCGGTAGT 21512 47 100.0 30 ............................................... AATAGGAGTAGGAATGCTTGTTCCGTTTTG 21589 47 100.0 30 ............................................... GGGAACACCATCAGTAGACTACAAGCTGCC 21666 47 100.0 29 ............................................... AAAGTATTAACCGTTCCAAATAGAACAAT 21742 47 100.0 30 ............................................... GCGGAAGCACCAGGCAAACCGAACGAACAA 21819 47 100.0 30 ............................................... AGATTATGAGAAATGATTGGAAACCAAGAT 21896 47 100.0 30 ............................................... CGATGAATGGTACACACCACGAGAAATCAT 21973 47 100.0 29 ............................................... CAATAGTAATCAAACAATCTAATGTAATA 22049 47 100.0 0 ............................................... | ========== ====== ====== ====== =============================================== ============================== ================== 60 47 100.0 30 GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Left flank : TAAACGATTTCTTTATTTAAGTAAAATATACGACGGTTATATTGCCGCATACGCTGAACAATAGTGCCGGAAACAAAACTTCCACGGATCAAATCCTTCATGGTACATTCCGCAATCCAAGCCGCATCACGGACATCACTCTTCCTACCAGGCAACTACTTGATGAAATAAGAGTTCACTAACTTGATGTAACTCTTCCAACTCAGGCGTCAAAACACCATATTTGAATTCTAGTTTGTCGCCATTATCATTCAAGATACAGGCAAATACACTATCTTTGTGAACGTCAAGACCACATACTATTCTCATTGGAGATAACATTTTTGAGACTATGAGCTCGTCAAACATTTATTTTGAGGCTCGTCCATCGATACCTCTCACGCCATAAAGATAGGGGTGGGCTTGACTTTTTCTTATTACACTGGCATATAAATCGCAATTTATATCTAAATTTGAGCCATTGAATACAGCGCCATCTCTTTTTTTACGCAACTTGCTTT # Right flank : CCGAATCTACATATCTAACTGTAGCACAACATACTAAAGCCTAATATAGGAAATAAAAAAGAAGCTGTATTTAACAAAAAATCCCGTTTTTTCTACGGGATTTTTTATTTTAAAATAGTTCTAACTGTTGTCCTGGCGTATTCACCATCTGTATCTTTTTCCCATAAAAAAGTTCAATATCCCCAAATTGTTTATCAGTTATGCACATAATTCCAATCTGCCCATATTCAGGAAGAAAAGATTTAACCCTTTTTATATGTACTGCTGCATTTTCACTACTAGCACAATGTCGTACATAAATAGAAAATTGAAACATAGTAAAGCCGTCTTTCTGTAAATTCTTTCTAAAATCAGCATAGGCTCTTTTATCTTTCTTCGTCTCCGTTGGTAAATCAAAAAGAACAAGTACCCACATAATACGATATTCACTAAAACGATCCATTAACGTTCGGGATAACTTATACGACGTAATTCTCCATCAAAACACTTATACAATGATG # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTGTGATTTGCTTTCAAATTAGTATCTTTGAGCCATTGAATACAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:65.96%AT] # Reference repeat match prediction: F [matched GTTGTGATTTGCTTTCAAATTAGTATCTTTGAACCATTGGAAACAGC with 98% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-2.00,-3.50] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: NA [66.7-70.0]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [4.5,0.37 Confidence: HIGH] # Array family : II-C [Matched known repeat from this family], // Array 1 10312-12645 **** Predicted by CRISPRDetect 2.4 *** >NZ_JAGWEP010000013.1 Bacteroides faecis strain jmh53 NODE_13_covk_40.038641_covr_85.33_cutoff_48, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================================================================================ ================== 10312 29 100.0 35 ............................. AGAGAAAAGGTGAATCAAAGATTTGAGACAACTAT 10376 29 100.0 36 ............................. TCTATCCCTTGCGCAATGACTCCCCACGACTTTTCG 10441 29 100.0 34 ............................. ACTAATGAAACATACTGGGAAGATGTGCTCTGGT 10504 29 100.0 35 ............................. ATCAGAACTTATACAACTTTATTCTTTAAGACAAA 10568 29 100.0 34 ............................. GCCGATATTGTTTAGCTGAATGTTATGCCCATTT 10631 29 100.0 36 ............................. TCATTTATAGCTCAACAGCCCAATGGTCTTTTCTGT 10696 29 100.0 37 ............................. CTACCATCTCCCAGATAGGCAAGAGACAGGCATTTGC 10762 29 100.0 36 ............................. GAGATGGATATGTCGCTGATGGCGTTAGATGATACG 10827 29 100.0 34 ............................. AATTTCTTACGAAATACAGTGATAACAGCAAAAA 10890 29 100.0 36 ............................. ATAATAAAGGGAGTAACACCTTTGTCTGCGTATGTG 10955 29 100.0 35 ............................. AGTGATACCGGTCGTCGGCCTGTGAAATCAAATCA 11019 29 100.0 34 ............................. ATGGTTTCAAGACAGACCTCATACATACCGATAC 11082 29 100.0 34 ............................. GGGATTAAGAGTTGAGACTACTACCGCGGTGAAA 11145 29 100.0 35 ............................. ATGTTATTCAATTGAATGTTGTGACCTCCTACAAA 11209 29 100.0 32 ............................. CAATATGCCATGGAGCTTTATGCGGTTGACAA 11270 29 100.0 34 ............................. ACGATAGGCAATGCAGTAGCGAGATATGAGAATG 11333 29 100.0 35 ............................. ATCACATGGACAACGAACATGCCTGGACAGGAAGC 11397 29 100.0 34 ............................. ACCAATGAAGCATACTGGGAAGATGTGCTCTGGT 11460 29 100.0 37 ............................. ATAAAAAGGATTAGTTCCCGCGCCAGTACCATTATTA 11526 29 100.0 35 ............................. TCGACTAATGCAGAGAAAGATAAATCAGACTCGAA 11590 29 100.0 34 ............................. TATATAAGAAAAGTCAGTCCATTTTTTCATTATC 11653 29 100.0 34 ............................. TGGCTATGCATCCCGTAGGAGCCAGCCATTCCTG 11716 29 100.0 35 ............................. ATGATTTCAATGCATTATTATCCAAAAAGATCACT 11780 29 100.0 38 ............................. ACTTGTATAGCTTATGTGTTTTTTCTCTATCATCCTCA 11847 29 100.0 35 ............................. ATGTTAAGTCTAATCTATAAAGGAACTGATGGATA 11911 29 100.0 34 ............................. GCCTAAACGATTCGCAATTTTTAGCAAGTAAAAA 11974 29 100.0 35 ............................. ATAATCCGTGAGGCTGGTTCGACTCCAGCACTGTC 12038 29 100.0 35 ............................. AAGAGTATCCGAGAGAGTATATGTCCTTCCGGAAG 12102 29 100.0 36 ............................. TTTCTTCTTTCCCGTAAGGTATCAGACCTCCGTATG 12167 29 100.0 38 ............................. ATTAAAAAAGGTACACTATTCTCACGAACCATGTACCG 12234 29 100.0 35 ............................. GTTGAAAAAGAATTTGCAATAGTGAATAATGTTCC 12298 29 100.0 96 ............................. GTCGTTACCATCACGTTCGCCCATGTTCTCAAACTCAGTATTAATTGAGTGGAATTGAAACTTCCTTCAGCTAAGAAGAGAGACACACATATAACA 12423 29 96.6 36 ..........................G.. TCATCTCGAAGTAGCCGGCGTCAATGAACCTTTGTT 12488 29 100.0 36 ............................. ACTCCTGCAACGCTAGTAGGTAAATTGTCAACCGCT 12553 29 96.6 34 .................C........... CTGCTTTTCCCGCTGAAATATACACCCAAATCCG 12616 29 86.2 0 .................CAA......G.. | T [12638] ========== ====== ====== ====== ============================= ================================================================================================ ================== 36 29 99.4 37 GTATTAATTGTACCTAGTGGAATTGAAAC # Left flank : CCTTTTAAGATGTATTGGTAGAGTATGTATGTCATTTTAGTATATGATTGTGGTGAAAGAAGGGTGGCTAAAATGTTGAAACTGTGTCGTAAATATTTAAATTGGATACAGAATTCTGTTTTTGAGGGTGAAATATCTGAAGTACGCCTAAAAAAACTTCTATATTCAGCTAAAGAATTTATGGATGAATCTGAAGATAGTATTATTATTTTCAAAGGACCTAATCATAGCTCTTTGGAAAAAGAAGTAGTGGGAAAAGAACGGTGTAGTATAGATAATTTTCTGTAATTTAGTTGTCGGAGACTTTAGTAATGTTTCCTTTTTAAGGAAAATTCTTCTTAAGAGTTCTTTGACTTGTTGATTTACAGCAATATAAGTGTGGTGTCGATCTCCAGCACTTTTTGTACTTTTAGGGATCGACACTATTTTTGACCTTTAAATATCTTTTGGGGGATTGTAACTCATTCATTTTAAGTGGTCTTTGGGGGATTGATGGTAGA # Right flank : CATATTTCAATTGTTAATAATATATAAGACTTTTCTCTTATATATGGTTCAAATTACGTTTTGAATCTGCAAGGTACACATATTAATACAGTTGTAGGCCTTTATTGATTGTGGGAATATTGTTTTGTGTAATTACTAGATGAATAGTAGTTTTGGCTTTTTATTATTCTGTTATTATAGTTTGCGTAATAATGAAGATGATCCATTTTTACCACTCATAAGAAATACTTACCTGAGGTACCCATTCCCATTTCTTTCGTATGGTGTTGTATTGATACCGCACATCGGTCTTCAATTTCCAGCCTTTATTTATTTTAAGGATAATGTTGCTGCCCAAAGTAGTTGGTATCACTTCAGATGAAAGTCCCCGATATCTTCGGGCATCCAGATTTTGTTCACCATATATGCTGAGAGACCATTTTTTAGAGATGCTATAATCCATCTGAACTTCAACATGAAAATGGTCCGGATTTTCTCCAAAGTTACTTTTACTGTGCAAA # Questionable array : NO Score: 6.09 # Score Detail : 1:0, 2:0, 3:3, 4:0.97, 5:0, 6:0.25, 7:-0.13, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATTAATTGTACCTAGTGGAATTGAAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: F Score: 4.5/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:68.97%AT] # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-1.40,0.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-7] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [61.7-80.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0.27 Confidence: HIGH] # Array family : NA //