Array 1 78296-76647 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITL01000004.1 Cronobacter sakazakii strain MOD1_5-20G Csak5-20G_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 78295 28 100.0 32 ............................ CGGAATAAAACCGAAGCAGACCATCACGTCAG 78235 28 100.0 32 ............................ GCTGATTCGCTGCCTGCTCAAAAATAGTCCGC 78175 28 100.0 32 ............................ ATCCCTGGCGAATTTTTTCATCCATCCATGAC 78115 28 100.0 32 ............................ ACGCTGGGAGAATGTGAAATGAAACGCGCGCC 78055 28 100.0 32 ............................ AACTAGGCAGGATCACCATGAAAGAGCTGCCT 77995 28 100.0 32 ............................ GCTGCACGACGCAGGAAAGCTTCCATGCCCGT 77935 28 100.0 33 ............................ GTCCCTCGCGGCCGCGCAGGAGCTGATGCCCGG 77874 28 100.0 32 ............................ AGTACGTAGCGGATAAATACCAGGTGCCTCCC 77814 28 100.0 32 ............................ ATACCCCGAACTTCTCAATCAGAGGAATGAGC 77754 28 100.0 32 ............................ TCCATCTTGTCCAGGCGCTTTTCCATCTCGTC 77694 28 100.0 32 ............................ ATCGCGTGTTGATGCTGGCCGCAGCATCTGCA 77634 28 100.0 32 ............................ AGGGCGCTCAGATTGCCGTCATATTCGTTCTT 77574 28 100.0 32 ............................ TGCACGCCGGCGTTTTGTTTAAACGTCGCGTT 77514 28 100.0 32 ............................ GGCATTACGCCGGGTGAGGTTAAGTTCCGCTA 77454 28 96.4 32 ..........A................. TTTGCTCTATCCTCGTCAGATAAGGAATAAGC 77394 28 100.0 32 ............................ ACGTCGTCAGTTTCAAGCTCACTGCGAAGGAA 77334 28 100.0 32 ............................ CGCTACCGTGTGCTTCATTCACCGCGCGAAGT 77274 28 100.0 32 ............................ TTGTTGTGCAGGCCCGCGAACGCCTCTGTGTT 77214 28 100.0 32 ............................ GCGAACAGCAAACGGCCCGGAAACACCTCATT 77154 28 100.0 32 ............................ GTTTTAATGCCGAAGAAGGCACGGCTGACCTT 77094 28 100.0 32 ............................ TCCGGCGTTCGGTTTGCGGCGGTATCGTCCCA 77034 28 100.0 32 ............................ GTTGTGGTGAATGCGCAGGCTGATGCGCTGAT 76974 28 100.0 32 ............................ TCAGAATGGCCCAGCGATGACGGCTACCGAAG 76914 28 100.0 32 ............................ GTACGACCCGCAGATTGCTGAGTACGAGCAAA 76854 28 100.0 32 ............................ AGCGCTGCTATCAGCTCAAGAACGGCAGCGGG 76794 28 100.0 32 ............................ AATGGGGTCATTATCGGTTCCTCCGTGATGCC 76734 28 96.4 31 ......................A..... TCGAACACAGCGACGCCGTTCCCGTCGCCGC 76675 27 92.9 0 ........................-..T | G,T [76652,76655] ========== ====== ====== ====== ============================ ================================= ================== 28 28 99.5 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CGGCGCTGGCGGAATTAGAGGCCATGCGCTGGCGGGCGGGTTTGCAGGATTACTGCCAGAGCAGCGCGATATTACCCGTGCCACAGGTTCAGGGCTGGCGCACCGTGACGCGCGTACAGGTGAAAAGCAACCCCGAACGCCTGCTGCGCCGCTCGGTGCGTAAAGGCTGGCTGACTGAAGAAGAGGCGCAGCAGCGGCTTTCTGGTTTACAGGTGCAACAAACCGCGCTGCCCTGGATTCAGGTTAAAAGCCTCTCCAGCGGCCAGCACTACCGGCTGTTTATCCAGCACGGCGCACTTCAGCCCACGCCCGTCAGCGGCACCTTCAGCAGTTACGGGTTAAGCGCCAGCGCCACCATCCCCTGGTTCTGACCCTTTTTAAATACGTCTCGCTAACCTGTTGATTTTTATAATGGGTTAGTGAGGCGTTGAAAAAAGGGTTTTAAGAAGTAAGCAGCGTTTATATTTTTATAAACAATGGGTTAAGAATTTTTGTCTTCA # Right flank : CACAGCGAATTCCCTCGCCGTCACACTTGACCTTCCTGCAAGGGGAGGGTTTAAGCTCAACGGGTGCACGTTGACGATAAGGACGGGAAGATGCAACGCCGAGAGTTTATCAAGTACACCGCCGCGCTGGGGGCGCTCAGCGCGCTGCCGACATGGAGCCGGGCCGCATTTGCCGCAGAGCAACCCGCGCTGCCTATCCCCGCGCTGCTGACGCCGGACGCCCGCAGCAGCATTCAGCTGACGGTTCAGGCGGGTAAAACCGCGTTTGCCGGTAAAAATGCCACGACCTGGGGCTATAACGGCTCGCTGCTGGGCCCGGCGATTAAGCTGCGCCAGGGCACGCCGGTCAATATCAATATCCGCAATAATCTCGCCGAAGAGACCACGGTGCACTGGCACGGTCTGGAAGTGCCGGGCGCGGTGGACGGCGGGCCGCAGGGAATTATCGCGCCGGGGCAGACGCGCAGCGTAAGCTTCACGCCTGAGCAGCGCGCCGCGAC # Questionable array : NO Score: 6.23 # Score Detail : 1:0, 2:3, 3:0, 4:0.97, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [5-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [45.0-75.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.92 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 87785-87395 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITL01000004.1 Cronobacter sakazakii strain MOD1_5-20G Csak5-20G_contig_4, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 87784 28 100.0 33 ............................ CTGTTGTGCCACTACCAGCGAACGGATCTAACA 87723 28 100.0 33 ............................ TCATTAACACTTTCGTTCAGATGGGGGTTGAAT 87662 28 100.0 32 ............................ TTTAGCAAACGCCAGCAGCACGGCGAGCTGTC 87602 28 100.0 32 ............................ TCACCCACACTCCACGGCCCCAGGTATAGCGA 87542 28 100.0 32 ............................ TGAATCCAGCCCGACACCGTTTTCTCGTCGTC 87482 28 100.0 32 ............................ GAGGCCGATAGATTTCTGCGCCTGCGCCATAA 87422 28 100.0 0 ............................ | ========== ====== ====== ====== ============================ ================================= ================== 7 28 100.0 32 GTTCACTGCCGTACAGGCAGCTTAGAAA # Left flank : CAGAAAAACAAAAACCGCCGTCAGGTCGGCCATGTCTTCCGCTTCTGATTCACTGAGCGCAAAACTGTTAGTGGAAAAGGCCAACAGACAGCCCAGAAACATTAGCCTGACTACTTTTCTCATCACGTCTACCACTCGCCAACCAATACCCAACGATAGCACATTTCGTTCAGGCGCGACGAGGAGATTTCTTGCCTTTAACGCGCGGATAACTGCCTGTTTCAGGCGATGTTATAAGAACATTATCGATAAGAAAGCAGCAGAAAAATCCCTCTATACGATACGGCAATCGCGCACGTTAACGCACCGAAGAGCAAACCACTGAACGAATGAAACGATAAAAGTGATGGGCGTTGCGCCTGGGCGTCTAAACCCTTTTTTATGCTCCGCTTGTAAGGCGTTGATTTTTAATGCGTGCAGTTGTGGTGATAAAAAAGGGTTTCAGGCGTTAAAAGCAAAAATTTGTTTTTAATTCAGGCATTCCGGTAATATTCGCTCCT # Right flank : ACTCCCAGCTACCCGCCGGGGTTGGATACGCCGTCCACTGCACACCCGCAGTAAAAAATTTTAAGCCCGAAGTAATGCTTTTATTATCGTTATATAAATAACGCCGCAATATCATGGGGAAATTATCTATAAAATTTATGGTTTCTGCTGTAAGAGCTTTGCTGGAAAATTCGCGCCAGATATTAATGCAGTGCTAATTAGCCGATATAACGGCGATAACACGTAAGAACCACATTAACTACAGACATTTGCAGGCTTATTGCCTGTCACAGGGTGTCGTTAGAGTAATCAATAATTATGTTTGATTGCAGATAATAGCGAAGGCCCTATAAAAATTGACATTTAGTGTCATTTATTAATAAAGCGCGGGAAATGAAAGGGATATCACGGCATATTTAAAGCCTTAATAATAGACTTATCTCTTATTTATATTTCAAAGAAATATAAATACAGGAATCATCTAACGGAATGATGTAATGGATCGGAATGCCGTAACGCCC # Questionable array : NO Score: 6.26 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTACAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: R [matched GTTCACTGCCGTACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.70,-8.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [41.7-65.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,5.51 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 1 199829-200469 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITL01000001.1 Cronobacter sakazakii strain MOD1_5-20G Csak5-20G_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================= ================== 199829 29 100.0 32 ............................. TTGACAAACCCGTTTTGACCACCCCTAAACCT 199890 29 100.0 32 ............................. CCAGCCAGCCCCAATGTGTCGATAAAAAGTGA 199951 29 100.0 33 ............................. CACACGGCGGCACAGACGCACTGAGCAACCTGC 200013 29 100.0 32 ............................. CGGGTGTGCCTTTTGGATGTAATTTCCACGAC 200074 29 100.0 33 ............................. CTCCGCAAACTGAAACGCGACCGTGAAGTGGCG 200136 29 100.0 32 ............................. CCAGATAACGTTAGAGATGGTGCGCTAATGCA 200197 29 96.6 31 ............................A TACGCCCAGGCGTCAGACGCATACAGGCTCG 200257 29 96.6 32 .C........................... AAGCAGACAAACTGGAAAGTTGTTATCTGGAA 200318 29 93.1 32 .C..........T................ ATCGCCAGTATTTTCAACGTGCCGGCGCACAT 200379 29 93.1 32 .C.................A......... TACTTTGAGAAAACCGCGCAATCTGTGCTGGT 200440 29 79.3 0 .C...........C...A..A....T..T | C [200465] ========== ====== ====== ====== ============================= ================================= ================== 11 29 96.2 32 CTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ATGAAAGCTTCAAATGGATGATGGCGAACAACATCGCGTTTATCGTCGCCAACATCAATATCAACTACCGTCGGCCTGCCGTGCTTGGCGATCTGCTGACTGTGACGAGCCAGGTGAAGCAGCTTAACGGTAAAAGCGGGGTCTTAAGCCAGGTCATTACGCTTGAGCCGGAAGGCGAAGTGGTCGCCGATGCGCTGATCACCTTTGTCTGTATCGATCTGAAAACGCAGAAAGCCTTACCGATTGAGGGCGAGCTGCGTGAAAAACTGGAAAAAATCACAGGGTAAATTCTGCAATAGTGGCGCTTGTGCTGGCAATCATGGATTTATCACCGCACAGGGTGAACAATCCGGTAGATGTTAACAGCCCACAAGCGTCGCGAAAAAACGCCTTCAAAATCAACAGGGCAGCCGTTCTTTAACAAGATGGGTTGTTGTAAAAATGTTGGTAGGATGTGGAAGGCGAAAAAATGCCATTCAGTACAGAGGGTTACCGTTAGT # Right flank : TCCCGCGTTCTTCGCGCCTGTCAATCGCCGCCCTCATTCCCGCCACAATCTTCAGCAACGTTTATACTTCAAAGCCCTTGTTAAAATTTGAACACTGCGCAACGAAGGAGAGGCTATGCGAGTACACCATCTCAACTGCGGTTGTATGTGTCCTTTGGGCGGCGCGCTGTACGATGGCTTCAGTAAAGGGCTGCATGCGCACCTCATCTGCCACTGCCTGCTGATTGAAACCGACCATCACGGGCTGGTGCTGGTGGATACCGGCTTTGGCTGTGACGATATGCGCCATCCGCGCCGCCGTTTACCACTCTTTTTCCGGGCGCTGAATAATATCCAGTACCGGGAATCATTAACGGCGCTGCACCATATTAAAGCGCTCGGCTTTAAGCCGGAGGATGTACGGCACATTGTGCTGACGCATCTGGATTTCGATCATGCCGGCGGGCTGAGCGATTTCCCGCAGGCGCAGGTGCATCTGATGCAGCGTGAAATGACGGCTG # Questionable array : NO Score: 6.07 # Score Detail : 1:0, 2:3, 3:0, 4:0.81, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched CTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-13] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [56.7-38.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], // Array 2 226954-227714 **** Predicted by CRISPRDetect 2.4 *** >NZ_NITL01000001.1 Cronobacter sakazakii strain MOD1_5-20G Csak5-20G_contig_1, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================= ================================ ================== 226954 29 100.0 32 ............................. ACATACTATGAGAGCGCAGCGGGCGAGCGTAT 227015 29 100.0 32 ............................. AGGGGATGAATCACGCGTACCCGTGCCGTGTA 227076 29 100.0 32 ............................. CTTTCGCTTCAACAGTCACTGAGCCGTCAGTG 227137 29 100.0 32 ............................. TAAAATGTTCCCATTCTCCCCTACTGGTTGCC 227198 29 93.1 32 ............T...............T TCCATCGTGTCTCTGATGAATGCGCGCGCAGT 227259 29 96.6 32 ............T................ GATAGGCTCCACATTTTTTTGTGCCGCCATGT 227320 29 89.7 32 .A..........T...............A GTAAAGCCCATTGTTCCAGCGTTGTTTTATGC 227381 29 93.1 32 .A..........T................ TAAATATTTTTTGATTACTTATTTGTGTTCAA 227442 29 100.0 32 ............................. GTCGACGGGCAGGGCCGCCCGCTCTGGCTGCC 227503 29 100.0 32 ............................. CAGCTAACGCAGGCGCGTGCGCGTCAAAACGT 227564 29 100.0 32 ............................. CCGAACTTTGTCGCGGTATTCGCGGGTTGTGC 227625 29 96.6 32 ....C........................ GCGGTGCCGCATGAGCAAAGAAGTCGAAAAGC 227686 29 100.0 0 ............................. | ========== ====== ====== ====== ============================= ================================ ================== 13 29 97.6 32 GTGTTCCCCGCGCGAGCGGGGATAAACCG # Left flank : ACCGTGCTCGCCGCCGGTGAAATCGAACCGCCGCAGCCCGCGGCGGACATGCTGCCGCCCGCGATACCGCAAGCTGATTCGCTGGCGGAAGCCGGTTTCAGGAGCCGCTGATGAGCATGCTGGTCGTCGTGACGGAAAACGTCCCGCCCCGGCTTCGCGGACGGCTCGCCATCTGGCTGCTGGAGCTGCGCGCCGGGGTTTACGTGGGCGACGTATCGCGCCGTGTGCGTGAAATGATCTGGCATCAGATAACCGAGTTAGCGGAGGAGGGCAATGTGGTGATGGCCTGGGCCACCAATAATGAATCCGGTTTCGATTTCCAGACGTTCGGCGTTAACCGTCGTATCCCGGTGGATTTGGACGGCCTGCGCCTTGTCTCGTTTTTACCGCTTGAAAATCAGTAGGTTATTCGCTCTTTAACAATGCGAGATTGTGAACCAAACGTTGGTAGGATGTTGTTGCACGAAAAAGTGTAATAGATACAAGTATATAGTTTTAGA # Right flank : GTTATTGAGTAGAATCGTCTGCCTTGGTGGGTGCGCTTCGCTTACCCACCCTACATATAAACTGGCGGGCCTGCCCTTAACCGATCCACAAAAACTTCCCGTGCCAGCTCTCGATTGCGCAATAAACCGGCATACGGCGCGCGTTGGGTTGCAATCGCCAGGGGCAACAGACATAATGCGCCCTGCGCGTTTAACGACGCTCTCAATGGGGGCCCTGTTGGTTCTCCCGCAACGCTACTCTGTTTACCAGGTCAGGTCCGGAAGGAAGCAGCCAAGGCAGATGACGTGTGTGCCGGGATGTAGCTGGCAGGGCCCCCACCCATTTCTGCCCTAAGTCCTTTTTTCAGCTTTATCCTGGTGATGAAACATCATAAGAGGTGTATCAACTCATCCTGGATACGAGCGGCCTTTGGCTGCTAATATCAGGTGCGGTTATTTACTATAACGTTTATGTTTTCATTTATGAGCACTCAGAAATGGATAATTCACTCAGGCGATTA # Questionable array : NO Score: 6.14 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTGTTCCCCGCGCGAGCGGGGATAAACCG # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [5,4] Score: 0.37/0.37 # Reference repeat match prediction: F [matched GTGTTCCCCGCGCGAGCGGGGATAAACCG with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-13.50,-12.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-3] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [68.3-53.3]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.92,0 Confidence: HIGH] # Array family : I-E [Matched known repeat from this family], //