Array 1 24484-23991 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFDB010000001.1 Azospirillum oleiclasticum strain ROY-1-1-2 contig1, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 24483 36 100.0 42 .................................... CGTGTTGGCGTTCGCGCCCGCCATCAGCATTGGCCGCGCCTC 24405 36 100.0 37 .................................... TCCATCCGCTTCTTCGCCTGCTCCGCCTGCCACTCGC 24332 36 100.0 42 .................................... CGGATTTTCTGTACGTTATCCCAGTAAGCCTTGTTCCACCCA 24254 36 100.0 40 .................................... TAGTTCTTGAGCGTGGTGACGATCAGTTCGGCGATGTTGG 24178 36 100.0 42 .................................... CCGCGCTGCTCGGCGTCGTCACCGACGAGTTGGCCCGCCGCG 24100 36 100.0 38 .................................... ATGTCGATGTCGGAGATGCCCTGGAAGGCCCGGAGGTT 24026 36 94.4 0 .C................................A. | ========== ====== ====== ====== ==================================== ========================================== ================== 7 36 99.2 40 CTATCCCCGGCAGAAATGCCGGGGCCTCATTGAAGC # Left flank : AGGCGATGCGCGGGTCGTTGTTCAGGAACGCGATCTGCGTGAAGCTCTGGGAAAACCCCAACGCCGCCAAGCCCTGCGACCGGTCACGGGGAACAGCGCGGAGACCGCGGCGTAGTCCGGGAGCGACGGGCATGGCGGATCCTCCCGCTTGCCGGTTTCATGGACTTTAATCCTATCAACAAGTCAATCCCGGCGCAAGGCGGAGAACACCGGCCCCACCGCGTTGCGCCCCGCGCCCCGGTCTCGCGCACCACGTGCACGAGTGGGTGACAGGCTCCCACCGCCGTGATACGTTCCGCTGCCGTTCTTTTTTTCGAGCGCTCCGGTGCACGCAAAAACCCCGGCAGCGCTCGAATCCGGCGGGTCGTTGATTTTCTTGGGTTCTTTGACATCGTTGAGAACAGAACGGAACGAAATTCGGCCCGTCACGAGCCGGTTCGTCGGACCCCTCGCAAACGCGTCGATTCGTCGGCCCTTATCAGCGGCTTGGCACCCACCCT # Right flank : CGGGCTCCGTCTCCGTCGTTGTCGCGGAATGCCAGCCGCTCCCGCCCGGGCACGAGTGCCGGGATCCGGAGTGGACCGTGGCGCAGGACGGAGGGCGCGGGCTTTTGGCAACGCGCTGCCCTCACCCTCCCACGCCTTCGGCGCGGGCCCCTCCCTCTCCCGCCGGAGGCGGGCGAGGGGTTATGGGTCGGAGGGGATTGTCCGCAGAGGTCCTGCGACCCTGCACCGTCACCGTTCCGCGTCAAGAACCTTCATCACCACATCAACCACGGATCGGGCGCGGTCCAGGGCAGCCGCGGCGCGATCCGGCGGGATCTCGGCGTCCGGCCCGAGTTCGTAATCGGCCACGGCCTTTAAGCTGTAGGCCTGCGAAAGGAAGCGCCGGGATTCCGGATCGAAGGCCGGTTCGTCGCGGGACAGCCGGTGGAATTCCGCGTGCACGCCCTGATGCGACTTCGCCACCTTTCCCGTGCACTCGAAGATAAGCGCCTGGGCGGCGT # Questionable array : NO Score: 6.22 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCCCCGGCAGAAATGCCGGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [25.0-35.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.42 Confidence: HIGH] # Array family : NA // Array 1 128301-128535 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFDB010000009.1 Azospirillum oleiclasticum strain ROY-1-1-2 contig9, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ===================================== ============================= ================== 128301 37 100.0 29 ..................................... GCCGCCGGGCCGGAGGCCGCGGTTTCGAC 128367 37 100.0 29 ..................................... GTCTCGGGAACGGGGCCGCCCTTCGTGCG 128433 37 97.3 29 T.................................... CGTAGGCGGGGCTGCCTTGCATGGCCTGT 128499 37 100.0 0 ..................................... | ========== ====== ====== ====== ===================================== ============================= ================== 4 37 99.3 29 CAGTGTAGCCGATGGGGATCGGGGGTCCAGCCGCAAC # Left flank : TGCTGGAGGAAGGGAAGGGCGATCTCGATCTTCCCGCGCTGGACCGGCCGTGGGCGCCCATGCCCCTGGAATGGCCACCCCCGGCGCCGGACGACCGGGCATGCTGAGCGGGTACCGGATGATGTGGATGATGGTGCTGTTCGACCTGCCGGTCCTCACCAAGCCCGAGCGCAAGGCGGCGACCCGGTTCCGCCAGTTCCTGCTCGACCAGGGCTTCGAGATGTCGCAGTTTTCCGTCTATCTGCGGTTCTGCAGCGGCAAGGAGCAGGTCGAGACGCTGACCGGCCGAATCGGGAAGAATGTCCCCTCCACCGGAAAGGTCCACATCTTGTGTTTCACCGACCGCCAGTACGAAAACATGGTGTGCTTCGACGGCCGCGCCCGAGCCGCATCACGCAGGAATCCCGAGCAGTACGTCCTGTTTTAGCCATGTCGCGCCCGTTTCCACCACCCTGGAATCCCGGAAAGCCGCTGAAAAATCAACGACTTGCCGGGACAGC # Right flank : GACGAAGGCCGCGGACCGTCCGGTACGGTTTCCGG # Questionable array : NO Score: 5.82 # Score Detail : 1:0, 2:3, 3:0, 4:0.96, 5:0, 6:0.25, 7:0.01, 8:0.6, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CAGTGTAGCCGATGGGGATCGGGGGTCCAGCCGCAAC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [7,5] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-7.60,-4.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-16.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.42,0 Confidence: HIGH] # Array family : NA // Array 1 188417-187780 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFDB010000012.1 Azospirillum oleiclasticum strain ROY-1-1-2 contig12, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================= ================== 188416 36 100.0 40 .................................... CATGGAGACGAACGCGGACAGGTGCCGGAACATCTGCCGC 188340 36 97.2 39 .C.................................. GTCTGGAAGCTCACCACCGGCAGGGTGAGCGTCGTGTTG 188265 36 100.0 39 .................................... TGCGACGACGAGGTGCTGAAGTTCGGCATCCACGCGCTG 188190 36 100.0 41 .................................... CCGCCGCCGTCCTTCAGCGTCTTCGAGCACAGCTCTGCCGC 188113 36 100.0 38 .................................... GTGCCGGTCTCCTCCGATCCCTCGCTCATGCGGGCGGA 188039 36 100.0 39 .................................... ACCATCAGGACGGGGAAGCTCTTCTTCGCCACCTTCAGG 187964 36 97.2 39 .....T.............................. ACCATCAGGACGGGGAAGCTCTTCTTCGCCACCTTCAGG 187889 36 97.2 38 .....T.............................. ACGCCGGCGTTCTCCTCGCTGTCGTCGGTGTAGCGGAA 187815 36 83.3 0 .........................G...GC..CTG | ========== ====== ====== ====== ==================================== ========================================= ================== 9 36 97.2 39 CTATCCCCGGCAGAAATGCCGGGGCCTCATTGAAGC # Left flank : TTTTCTTCGAGCGCTGCGGTGCAGGCGAAAACCCCGGCAGCGCTCGAATCCGGCGGGCCTTTGATTCTCTTGGGTTCTTTGACATCGTTGAGAACAGAACGGAACGAAAATCGGCCCACATCCGGCCGGTTCGCCGGACCCCTCGCAAACGCGTCGATTCGGCGGCCCTTTTCAGCGGCTTGGCAACCCCCC # Right flank : TTTGGACGCCGGGCTTTCACAGGCGCCAATCCTCTCCCACCGTCGTCCCCGGCTTGACCGGGGATCCGGGCACATCGGGCAAGTCCCTGGACGACCGGATCCCCGCCTTCGCGCTACGGTATGCACACAACGCTGGAAGCGCCCAACAACCCTCTCCCGCCCCGGGAGAGGGTGGCGCCGGCAGGCGCCGGGTGAGGGTCCAACGCCGCGGCTTCGCTCCACGTTCCCGCAACGAGCCCTCACCCGGCCGGCTTGCGCCGGCCACCCTCTCCCGGGGCGGGAGAGGGTTTTCCCCCTCACCCGGCGCTGCGCGCCGACCTCTCCCCGGGGGGGAGAGGTGGAGAGCGTCTCACGTCCACAATGTGTGCATGCCGTAGCGCTTTCGCCGGGATTACGATGACCGTGCTTCAGGACAACGATCCCCGAATGCGACAGCCCTGGGGCGTGCAGTCATGGTCAAGCGCGTCATCGTCCCCGGACAGCCCCGCCCGACCCGTCAA # Questionable array : NO Score: 6.12 # Score Detail : 1:0, 2:3, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCCCCGGCAGAAATGCCGGGGCCTCATTGAAGC # Alternate repeat : CTATCTCCGGCAGAAATGCCGGGGCCTCATTGAAGC # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [6,8] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [6-1] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [33.3-31.7]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0,1.15 Confidence: HIGH] # Array family : NA // Array 1 296615-295607 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFDB010000008.1 Azospirillum oleiclasticum strain ROY-1-1-2 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ======================================== ================== 296614 36 100.0 40 .................................... CCGGCGTCGCGTCGATGGGGCTTGCCAAGGCTGCCGTCGC 296538 36 100.0 38 .................................... CCCGCCAGTGCTGGCCGGGGTGGGCGGCCTGGGGGAAC 296464 36 100.0 39 .................................... CCCTGCGCGAGGCGCGGGACGAGGATCGATTCTGGCTGG 296389 36 100.0 38 .................................... GACCCCTTCGTCCTGGCCATCCTGCGCCAGATCGGCGT 296315 36 100.0 38 .................................... GCGGAGTTGTCAGCGTCGGAAAACGAGGGCATTGCTTT 296241 36 100.0 40 .................................... CAGGACCGCGTACGCCTTGTCAAACGCCTCGGAAATCTCG 296165 36 100.0 39 .................................... TATGACATGGAGCGGCCTTAGCAGTGGGAATAAACCCAA 296090 36 100.0 38 .................................... ATTGTCGATAAATTCCAGGCACAAAGCACAAGCTTCTA 296016 36 100.0 38 .................................... CGCCCTCGTTCACCAGCGCGAGCGACAAGCCGGACCCG 295942 36 100.0 39 .................................... ACATCCCAGTCGGACAGCAGGCTCAGCGCGTTGTCCGCC 295867 36 100.0 38 .................................... GGCGTGGAGCCGGCGGTAGGCCGGGATCAGGCGTCCGC 295793 36 100.0 40 .................................... ACCAACGTCATCTGGAGAGGCGACATCGGCGCTTTCATCT 295717 36 100.0 39 .................................... ATGAGGCTGGTACCGGATATCTGGGATTCCGGCAGTGCG 295642 36 94.4 0 .........................C........C. | ========== ====== ====== ====== ==================================== ======================================== ================== 14 36 99.6 39 GTATCCCCGGCCTTCGGGCCGGGGCTTTATTGAAGC # Left flank : CCAGATAGGCCAGACGGGGGCAGTAGACGTACTCGTTGATCATGCGGGCGGGCAGGGGCGGCGTGCCGGTGGGCAGCGGAACCGGCGGGAACGGCAACTCCGGCTGCCATTCGGTGACGGCGGCGTCGGGGATCACGGCATCCGGCCCGGCCATGGGATGTCTCTCGCGGTGGAACTGCCGGGCGCCTGTTCGTCCCGACACCGCGGCATGGGGCGATGATGCACGCTCCGGCTTTGCGAGTCCAGGGGCCGGGAAGGGCTTGGTTGCGGCCGACGTTGCGATTATCATGCGCGCGGTCCGCCGCCCGGATGCGAGCACCCTTGTGGCGCATCACCCCCCGGGGGTCGCTCGAATCGGTCTTTTACATTGTGAATCAACCGGTTGGCGCTCCGTCGCACGGGCCGGGGCGCCGGATTACGGAAAATCAACGCCGCTCGGCGGAGGGTGCTCGAATCCCGCCTTGCAAGGCGTTGAGTTTGCAGGCAGTTTTCGGGGGGCC # Right flank : GGCCCCCCGGCCCGGTTGCCGGGCGTATCCTCCACCCTCCGGCGCACCGCGGCCGCGATGGCCGGCAGGTCGGTGGTGTCGATGCGTTGGCTGGCGTAGGAGTGGAGGAGCAGGCTGTCGGTCAGGTGTGGGTCGTACTTTCCCGCCACACGCGTGGATGCCGATCGAAATGCCGCGGGGTGCTGCGTCCAGGCCACGGGCGCGCAGGGCGAGCGCCAGCGTGCCCAGCTTCACCGTGCCCACCCACGGGAAAAGCCAGAGGTCGCCGTCGTCGTCGATCAGCCCCGTGCGGTCCAGGCGGTGGCGGGCGAAGGCCGTCCGCCCCTCCGCCAGCAGGGACCGCGCCGTGGCGTCGAGGAAGGCCGGGACGTCGTCCGCCGTGTAGAGCGCGCGCATCGCCTCCACGACCGTGTCGTGCAGGTCGCCGCCGTTGCCGCCGAAGGGGGGCGGACGCCCGGCCCTGGCGGGCTCGACCTCGATCAGTCTCTCCCGGTCCAGCA # Questionable array : NO Score: 3.24 # Score Detail : 1:0, 2:0, 3:0, 4:0.98, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTATCCCCGGCCTTCGGGCCGGGGCTTTATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [9,4] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-15.10,-16.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: R [2-0] Score: 0.41/0.41 # AT richness analysis in flanks prediction: R [18.3-36.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,1.05 Confidence: MEDIUM] # Array family : NA // Array 2 299256-300263 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFDB010000008.1 Azospirillum oleiclasticum strain ROY-1-1-2 contig8, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ==================================== ========================================== ================== 299256 36 100.0 41 .................................... TGGAGCGATTCGAACATGGCGACATCCGCGAAGCGCTCGCC 299333 36 100.0 37 .................................... ATAAGAAAGAACTTGGGTTTCTCCATTTAGCCAAGAT 299406 36 100.0 38 .................................... GTAGCCGGACTCAAGGGCCTGCGCTTGTTGCCCGAGGA 299480 36 100.0 37 .................................... GCCGGCATCGCCATCCACAACCTGCTGAAGACGCATC 299553 36 100.0 40 .................................... CACAGACGATCAGAGACGCGGTGAAGCCATCACCGGAACG 299629 36 100.0 38 .................................... GCCGCCACTTTGTACGCGGCTTCCTTGAACGCGTCGGA 299703 36 100.0 42 .................................... GTAGACCAACCGCGGGGTAGAGATGCATCCTGTCCATGGCTG 299781 36 100.0 37 .................................... TAGGCCAGCCACGCCTCCGGCGTCTGCCAGTGGAACA 299854 36 100.0 42 .................................... GCAATTCTTTTCGGATCGTTGCCCGGCAATGATTGAACCACG 299932 36 100.0 37 .................................... GGCGACGGCGGCTTCGCCACCTTCTACGGTGTGGGTG 300005 36 94.4 39 .......C...........................T TTTCGTGATCGGCATGGCGCACCTCGCTGTGTGCATGCC 300080 36 94.4 39 ......TC............................ GAGTTTCAGAAGGATACCCTCCTTCTCCGTGGAGCGCCC 300155 36 91.7 37 .......C...........T.........C...... ACTGCCTACCAAGTCGGGTGGTGAACATTTCCATTTG 300228 36 80.6 0 .......CA..................GG...GG.T | ========== ====== ====== ====== ==================================== ========================================== ================== 14 36 97.2 39 CTATCCCTGGCAGAAATGCCGGGGCTTTATTGAAGC # Left flank : TGCGCGACGAGAACCTGTACGTGATCACCTACGACATCGCCGACCCCAAGCGCTGGCGCAAGGTCTTCCGGCTGATGGAGGGATACGGGGAATGGCTCCAGTTCTCCGTCTTCCAGTGCCGCCTCGGCCGGCGCCGCCTGACCGAGCTGCGCACGCAGCTGGAGACGCGCATCAAGCCCAAGGAGGACCACGTCCTCATCCTCGACCTCGGCCCCGCCGACGGCGTGCGCCCGCGGGTGGACAGCCTGGGCAGGATCTTCGAACCCGTGGTGCGCCGGCCCACGATCGTGTAGCCTTCCGCCGACCGGATTCGAGCGGTCTTGTGACGCGCCACCCCCCGGGGGTCGCTCGAATCGCTCTTTGACATTGTGAATCAAGTGGTTGGCGGACGCGAGGGGAGACCCGCGCCCGTGATTCTGGAAAATGCTGCCACCGTCGCCAGGGGGTGCTCGAATCCTGCCTTGCAAACCATTGAGATCGCTTATAGATTCGGGGGCGCC # Right flank : TGCGTCCCCGCCGCCACGTTTGTCGATGTCATCCGCTGGACGGCCCGGCATCATCCCGGTGTCTCAAGGGTAATGCCCGTCGCCGAAGCGAACGGCGCCGTAAGGGCGTCACGGGTCACAGACGCCGCAGCTCGGACAGGATCCGGCGTCCGATGCGTGGCTTGAGCGTCTTCTTGTTGGTGAGATCCACCCGCAGCCCAAGCGCCTCCGACAACTCCATCTGAAGGCCGACATGGTCGATCAGGGTGACGCCCTCCCCAAGGTCGACGAGGATGTCCACGTCGCTGTCCTCACGCTGCTCCCCGCGGACATGGGAACCGAACACACCCATCTCGCGGATGGGGTAACGGCTTTGCAGCGCCGGCCGAATTGCAACGCCTCAGTGCCACCACCCCTTGCACGGCAACGCAGGGGAGAATAACGTCGCCCCCACTCTCCTCTGCCTCCGGAGCCCCCCCATGTCACCCACCCCTCCCTCTCCCGTCGCCCCCACGCTTGCC # Questionable array : NO Score: 3.12 # Score Detail : 1:0, 2:0, 3:0, 4:0.86, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCCCTGGCAGAAATGCCGGGGCTTTATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: R [8,9] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-12.60,-7.00] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-14] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [43.3-30.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.05,0.37 Confidence: MEDIUM] # Array family : NA // Array 3 308549-308001 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFDB010000008.1 Azospirillum oleiclasticum strain ROY-1-1-2 contig8, whole genome shotgun sequence Array_Orientation: Reverse Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ================================= =========================================== ================== 308548 33 100.0 41 ................................. AGCGTGCCGGCGGTGGTGGGCAACCATGGGCGGATGACGCA 308474 33 100.0 43 ................................. AGCCCTCAAGAAAATCGGCGCTCGTTGCCCGATGGACGGTCCA 308398 33 100.0 43 ................................. AGCACGCCGCCGCCGGGCAGGTACTCCCGCCACCCGCCGGACG 308322 33 100.0 30 ................................. AGCCAAGAATGGTCACACCGACCCGCACAC Deletion [308260] 308259 33 100.0 43 ................................. AGCACGCCGCCGCCGGGCAGGTACTCCCGCCACCCGCCGGACG 308183 33 100.0 43 ................................. AGCACGCCGCCGCCGGGCAGGTACTCCCGCCACCCGCCGGACG 308107 33 100.0 41 ................................. AGCTCGAACAACATGCAATCGAAGTTTGGAACCGTCGGGTC 308033 33 100.0 0 ................................. | ========== ====== ====== ====== ================================= =========================================== ================== 8 33 100.0 41 CTATCCCCGGCAGAAATGCCGGGGCTTTATTGA # Left flank : GGCGGCACGCCTCGTGCCGGGTTGGCGGCGATGACGCCTTCCGGCCGGTCGCCGCGTCGCGCAGGAAGCGGCCGATGTCGACCGGCATCGAACCCTTCACCGACCAGGCGCCGGGCCGATGGACGACGTGATGGCCGATGCGGCCGCGCTCGGTTGCCGGCGTGCCACCCTCCGACGGCGGAGCCCTCTTCCGTCATGGAAGCAGGGGGACGCGGACGCCTCGCGAACCCCGCCCCGCGACGCCATGGCACGCTTGGTCGCCCCGCCCGTTCCGGTTATCCTCCCCACCCGGGGCCGCCCACCGGCCCGATTCGAGCGGTCTTGTGACGCTCCACCCCCCGGGGGTCGCTCGAATCGCTGTTTGACATTGTGGATCAAGGACTTGGCCGCCGCGTCGGGATGGTGGAAGCCAAGATTACGGAAAATCGTGCGGCTTTGGCGAGGGGTGCTCGAACCCCGTCTTGCAAGCCGTTGAAACGGCTTGTAGATTTCGGGGTGCC # Right flank : AGCCGCTCGTAGGTCTCCGGGGACAGCAGCCCCCGCCGGGGCTTTGCGTCGTTACCGGCGGGGCGGCCTCATCCCTCCTCCGGGCGGAACAGCCCGAGTCCGAGATGGCAATCCCAGCCGAGCGCGAGGGGGCCCTGGACCGGCTCCGGGAAGGCGACGCGCCAGAGGCTGCCCGTGGGATCCGGCCGGGGGCGGGTGACGCGGCTTTCCAGGCGGGTGGCGAAGGCGTGGGGCGGCAGGTTGCTGCCGGGCGTGACCGGGGTCGCGGCCAGCCGCTCCAGCCGCGCCGGGGCGGGACGGCCGCGGAAGGCGAGGTCGCGGGCGAGCAGGGCCTCGGGCCCCAGCCCCCGCTTGGGGTGCAGCGGGCTGAACCAGGGCGTGGCGGAGACCCACACCGCGGCGCGCCCCGCCAGCCGGCAGGGGGCGGCGTCGGCCATGCCCAGCCACACGCAGCGGACCGGCCATTCCCCCTGCCGCCCGTCGAACAGCCGCTCGCAGGC # Questionable array : NO Score: 3.26 # Score Detail : 1:0, 2:0, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : CTATCCCCGGCAGAAATGCCGGGGCTTTATTGA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,7] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: R [-13.20,-14.80] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: R [26.7-40.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: R [0.37,0.64 Confidence: LOW] # Array family : NA // Array 1 67329-67511 **** Predicted by CRISPRDetect 2.4 *** >NZ_JABFDB010000035.1 Azospirillum oleiclasticum strain ROY-1-1-2 contig35, whole genome shotgun sequence Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== =================================== ========================================= ================== 67329 35 100.0 37 ................................... GCGTTCTGGCTGGGCATGCGGTGTGGGCAAGGGAGCC 67401 35 100.0 41 ................................... CACCTCTTCGGCGCGCACCGCTCCATCCTTGTCGCGCCAGT 67477 35 100.0 0 ................................... | ========== ====== ====== ====== =================================== ========================================= ================== 3 35 100.0 40 TATCCCCGGCAGAAATGCCGGGGCCTCATTGAAGC # Left flank : CTCCACGATCTCCCGTGTGGTGACGGGGGCGGTTGCCGGCCTGAGGATGTCGTAGCAGAAGCGGGCGCACTCTCCCGGCCCGAACCACTTCCCCCGGCGGGCGGGACGCTTGGGGCGGACGGTGCGGAGATCGAAGTCGGGATCGAAGACGATCAGGGCGCGGGCGACGGCGGAGAGATCGTCACGGAGCCGGGCAAGCTCGCACTCGGCTTCCCGGATGCGGCCCTGGATCTCGGCGTGCTTGTCCCGCAGGGCGGAGACGACGTGAGGCTCGGCCATGGTGCCGCACCTCAATGGGGGATCGACGCGCAGCGCCGGAGCGCGCACGTGCTATGCTGGGAACCAGCCATGGTCCGATGCTCTCCAGAAGCTCGGGTTGTGGTCAGGCCGGGTCGGGTGCGCCAACACCCTTCCCGGCCGCTTCCATGGTCCCCTAGATCGTTCGTAGGCGGTAGGGTGAGCTGGTGGCGGGTGCTACATAATTCCGCCTTCTTCAGCGC # Right flank : CGCGTTCTGGAACAACAGCATGATCCCCGCGACCACCAGCCCCCCGGCACCCGCCGGGGGCCTCGGTGGTACCCGCCCCACGGGGATCGCATTTGCTGATCTTTTTTCCTGAGCAGGACTTTTCGTCTTTCCCGCGAAGGCGGGAATCCAGGGCGAGCGTCCGCGAGCCACGTGACTCATGTCGCCGCGGACGCGGCTTTCCCTGGATCCCCGCCTTCGCGGGGATGACGGTGGTCTTGCCTCAGGACAATGATCGCTGATTGCGATCACCATGGCGCGCCCCCAACCACCCTCGCCCCCGCCTCCCCCGGCGTGCTAACCTCGCGCCTTCCCGAGCGCGCGCATCCGCGCGCCGTTGCGGACGGTGGCATGGCGGCAACACGGTTCCCATCGGTCACGCTGCCCGAGGAGGCGGGTGCGGCGGATATGGAGAGTGCCTGGATCGACGTGATCCGGAAGCTCGACGAGACCTACGCCGACCTCGTCTCCCAACAGGTGGA # Questionable array : NO Score: 5.67 # Score Detail : 1:0, 2:3, 3:0, 4:1.00, 5:0, 6:0.25, 7:0.02, 8:0.4, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : TATCCCCGGCAGAAATGCCGGGGCCTCATTGAAGC # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: F [8,6] Score: 0.37/0.37 # Reference repeat match prediction: NA # Secondary Structural analysis prediction: F [-11.50,-9.90] Score: 0.37/0.37 # Array degeneracy analysis prediction: NA [0-0] Score: 0/0.41 # AT richness analysis in flanks prediction: F [40.0-26.7]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [1.01,0 Confidence: HIGH] # Array family : NA //