Array 1 3103461-3104451 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027418.1 Providencia rettgeri strain FDAARGOS_330 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3103461 28 100.0 32 ............................ TAATTTAATTTCCATTGCTGTTTTCCTCATCT 3103521 28 100.0 32 ............................ TTTGACACCTTTTTCACCGTCAAAAACAACAA 3103581 28 100.0 32 ............................ TACGATAAACATCAGTTAGTGGGTATCCAAAC 3103641 28 100.0 32 ............................ ATGAGCACGCTAAGTTGATTCGGCGATAAACA 3103701 28 100.0 32 ............................ TGACCACGTCACCGTTTCACCAACTATTGATG 3103761 28 100.0 33 ............................ TGTTTCTAAGTACCGAACAAGAGAAAACTTTGT 3103822 28 96.4 32 ............G............... AGTGCAAACGTCGATTAATGGCAGCGTAGTAA 3103882 28 96.4 32 ............G............... AGACATAGAGCTATCAAGAACCGCCTCAGCTC 3103942 28 96.4 32 ............G............... GAAAAGATAAGTTCTTGGGCAGACCTGAGACA 3104002 28 96.4 32 ............G............... TTTTCCTTTGTTTTATCTATTCACGTAAAACA 3104062 28 100.0 33 ............................ CTGCAAATGTCGAATTGCTAGGCGCGGGGAAAT 3104123 28 96.4 33 ............G............... ATCGCCGTGAAATCAGACTCAGCGAATCGAATG 3104184 28 96.4 32 ............G............... CGAAGTGGAAAAGAAAAGAGCAACTATTGATT 3104244 28 100.0 32 ............................ GGAACTAACGCGGCTACGCCATAAATTATCGT 3104304 28 96.4 32 ..........G................. TCATGCTGATGAATGGGATCAGGATGTTCTCT 3104364 28 92.9 32 ..........G..T.............. TCTTCATTGCATCCCTGCGAGTTAAATTAATC 3104424 28 89.3 0 .............A........A.A... | ========== ====== ====== ====== ============================ ================================= ================== 17 28 97.5 32 GTTCACTGCCATACAGGCAGCTTAGAAA # Left flank : ACCAAATTTCTAATATTGAAGCGAAACAAGGCTTACAACTGCAAGAAATTGATAAATTAGATTTCTTGGCAGATACCCGTTCGATTCAAAATGCAGCTCGTAAAAGTGAGCTGCTTGAGACCAACTGGACGGGCACTACGACGGATTACTATAAAGAAAAGGCGATGTTTGATGCATCCCAAAGTATTTTTAAAGATTTAAACAGTATGTCACTTTTTGGTAACCGTTAATAAATTAAAGGTTTAATTTTACTCACCGCGCTTTGGAGTGATTCGAGCGCGGTTTTTTTTATTTTGAGGTACCTATATTTACGCACTATTTTTGTTTAGTGCATATTGCATAAATCCCGATTTGTTTTACCCTAGTTTGACCTTTATTTTTTGCTATTTAAAAAATTAATTATTAAACAATAAGTTAGGATACCCTCCCAAAACAAAGGTATTTTGGCGTTTATAAAGCTAGTACATTGTTTTCCTTTGTTTTATCTTATTTAACTAATA # Right flank : ACAGCCAAGGAGTTATTTTTACTGGATATTCTGTGAAACCCCTCGCAAATTTGGCTTTAGTGATAATTTAAGGCTTGTTTCATTGGTTAAAGCTTATTCTAATAAGATTGATTCAAAAAACTTATTATTTAAGGAAGAATTCAACTGCTTATGGATGACTTTTCACCTAGTGACTTAAAAACCATCTTACATTCCAAGCGCGCTAACATGTATTACTTAGAGCATTGTCGAGTGATGCAAAAAGATGGTCGAGTGTTGTATTTCACAGAGGCAAAAAATGAAAACCTCTATTTCAATATCCCTATTGCAAATACAACAGTTTTGTTACTTGGTACAGGAACATCAATTACCCAAGCCGCAATGAGAATGTTATCTCAAGCGGGGGTACTAGTTGGGTTTTGTGGGGGTGGTGGTACACCTCTGTATATGTCTACAGAAGTAGAATGGATGACACCACAAGGCGAATATCGGCCAACGGAATATTTACAAAGCTGGTTATC # Questionable array : NO Score: 5.89 # Score Detail : 1:0, 2:3, 3:0, 4:0.88, 5:0, 6:0.25, 7:0.01, 8:1, 9:0.75, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCATACAGGCAGCTTAGAAA # Alternate repeat : GTTCACTGCCATGCAGGCAGCTTAGAAA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCATACAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: R [-7.20,-8.40] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-6] Score: 0.41/0.41 # AT richness analysis in flanks prediction: F [76.7-60.0]%AT Score: 0.27/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.18,0.37 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], // Array 2 3113089-3113838 **** Predicted by CRISPRDetect 2.4 *** >NZ_CP027418.1 Providencia rettgeri strain FDAARGOS_330 chromosome, complete genome Array_Orientation: Forward Position Repeat %id Spacer Repeat_Sequence Spacer_Sequence Insertion/Deletion ========== ====== ====== ====== ============================ ================================= ================== 3113089 28 100.0 32 ............................ CAATCCATTTGAGTGCAATCTAAGTGGCTAAT 3113149 28 100.0 32 ............................ TGACTTAGTTGACGCAGAGCGGGGGTATCGCA 3113209 28 100.0 32 ............................ TCAATAAATGTTGCTGATACAGAATAAACACC 3113269 28 100.0 32 ............................ ACAACAAAAGTGGAAAAGTGTCAGGGAGAGAC 3113329 28 100.0 32 ............................ CTGAAACATTAGAAAGTCGTGCTCAAGATATT 3113389 28 100.0 32 ............................ TTACTCTGATGCTACGTTCGAAAAAGCGTGGA 3113449 28 100.0 32 ............................ GGATCGCAATAATTCGACTTCAAGCTCTACTC 3113509 28 100.0 32 ............................ AGCCCACTCGTAAATGAGCTGTGTAATTAACT 3113569 28 100.0 32 ............................ AGCGAATATCAACGCACCCACCGTGTCGATTT 3113629 28 100.0 32 ............................ TTGTGCTTTCTATTGATCATCCCTGATGTTGA 3113689 28 100.0 33 ............................ CGATGATTCAACACCAACAAGCGCATGTAACGT 3113750 28 96.4 32 ......................C..... AGTGGATTAAAGAGCTTAATTTATCAACTTAA 3113810 28 89.3 0 ...T......A.........T....... | G [3113836] ========== ====== ====== ====== ============================ ================================= ================== 13 28 98.9 32 GTTCACTGCCGTATAGGCAGCTTAGAAA # Left flank : TATTAAATCTATTCAAACCGTGCCGGAGCAAAGTGTTCCTGTCAGTTATATTCGACGACATGTAAAAGGCCAAAACCGGATAGAAGCCGATATGCAGCAAAAGGCACGTTTATGGTCTGAAAAATCAGGTCAGTCAGTGGCGCAGTGCTTGGAAGTGTTATCTAAAAGTCGGCCGAAAGCCAATAACCGTTTACCGTTTATTTGGGTTACAAGTTTACATGCAAAGAATGAGAAAACAGGAAGCCGGCCTTTTCCACTCTTTATTGAAAAAGTGGTAGCAACACAAATGCAAGCTGGGATGTTTAATTGCTATGGTTTAAGCCAGCTTTCAAATGACCAAACGTTGGTTGCAACGGTTCCTCATTTTTAACCATTATTTTTTGTTCTTTAAAAAATAACTTTTAAATCAGCATGTTATAATTATTCACAAATTAAAGGGTATTTTATAATAAATACCCTTAACTAATTGTTATAGCATGATTATTATATTAAATTGCATA # Right flank : AGAATATTAAAGAATAGATATCTAGACTCTTTAATTGGTGAAAAAAATAAATGTGAGTTAAAGCTAGTTTTTTGTGAAATAAGTAGTTATACCATCTTTATCTTAAGTTAAATTTAATATCAAATATAATACGTATCTATCATTCGATAGCTTAGAAATGAAATATAGAACGGGTATTATATTACTGCCACAAAGGCAGATTTTGATTAGAGATAAATACCTGAAAAATAGATCGGGTAACTAGATAATAATAGGGATAACTAGGAGGGGCTATGAGCTTTGAGTTTGAAATAAATTGTTATTGGTTTTCAATCATCATTCGATTTTATAAATGATTTTATAAACCTGCATTTAATTAAAAAAATACAAACATCACGACTCAAATAAACAAATTAAACATCAATGACAATTGCTCAAAAGCTTGGTGGATAAGGCGTTCAGTATATCGGGGAAGGATGGAGATAATTACCCCTAGCATGCTGATACCTATAGTTAAGGTG # Questionable array : NO Score: 6.21 # Score Detail : 1:0, 2:3, 3:0, 4:0.95, 5:0, 6:0.25, 7:0.01, 8:1, 9:1, # Score Legend : 1: cas, 2: likely_repeat, 3: motif_match, 4: overall_repeat_identity, 5: one_repeat_cluster, 6: exp_repeat_length, 7: exp_spacer_length, 8: spacer_identity, 9: log(total repeats) - log(total mutated repeats), # Primary repeat : GTTCACTGCCGTATAGGCAGCTTAGAAA # Alternate repeat : NA # Directional analysis summary from each method: # Motif ATTGAAA(N) match prediction: NA Score: 0/4.5 # A,T distribution in repeat prediction: NA [Repeat is AT rich:53.57%AT] # Reference repeat match prediction: F [matched GTTCACTGCCGTATAGGCAGCTTAGAAA with 100% identity] Score: 4.5/4.5 # Secondary Structural analysis prediction: F [-8.00,-7.70] Score: 0.37/0.37 # Array degeneracy analysis prediction: F [0-5] Score: 0.41/0.41 # AT richness analysis in flanks prediction: NA [83.3-78.3]%AT Score: 0/0.27 # Longer leader analysis prediction: NA # ---------------------------------------------------------------------------- # Final direction: F [5.28,0 Confidence: HIGH] # Array family : I-F [Matched known repeat from this family], //